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Volumn 13, Issue 3-4, 2007, Pages 127-133

DGGE and 16S rDNA sequencing analysis of bacterial communities in colon content and feces of pigs fed whole crop rice

Author keywords

16S rDNA; DGGE; Growing finishing pigs; Intestinal bacterial community; Whole crop rice

Indexed keywords

DNA 16S;

EID: 34547929063     PISSN: 10759964     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.anaerobe.2007.03.001     Document Type: Article
Times cited : (27)

References (34)
  • 1
    • 0018325870 scopus 로고
    • Energy source of major intestinal fermentative anaerobes
    • Salyers A.A. Energy source of major intestinal fermentative anaerobes. Am J Clin Nutr 32 (1979) 158-163
    • (1979) Am J Clin Nutr , vol.32 , pp. 158-163
    • Salyers, A.A.1
  • 2
    • 0021984051 scopus 로고
    • Enumeration and activity of cellulolytic bacterial from gestating swine fed various levels of dietary fiber
    • Varel V.H., and Pond W.G. Enumeration and activity of cellulolytic bacterial from gestating swine fed various levels of dietary fiber. Appl Environ Microbiol 49 (1985) 858-862
    • (1985) Appl Environ Microbiol , vol.49 , pp. 858-862
    • Varel, V.H.1    Pond, W.G.2
  • 3
    • 0020164709 scopus 로고
    • Influence of high-fiber on bacterial populations in gastrointestinal tracts of obese and lean genotype pigs
    • Varel V.H., Pond W.G., Pekas J.C., and Yen J.T. Influence of high-fiber on bacterial populations in gastrointestinal tracts of obese and lean genotype pigs. Appl Environ Microbiol 44 (1982) 107-112
    • (1982) Appl Environ Microbiol , vol.44 , pp. 107-112
    • Varel, V.H.1    Pond, W.G.2    Pekas, J.C.3    Yen, J.T.4
  • 4
    • 0031714906 scopus 로고    scopus 로고
    • Changes in bacterial populations in the colon of pigs fed different sources of dietary fibre, and the development of swine dysentery after experimental infection
    • Durmic Z., Pethick D.W., Pluske J.R., and Hampson D.J. Changes in bacterial populations in the colon of pigs fed different sources of dietary fibre, and the development of swine dysentery after experimental infection. J Appl Microbiol 85 (1998) 574-582
    • (1998) J Appl Microbiol , vol.85 , pp. 574-582
    • Durmic, Z.1    Pethick, D.W.2    Pluske, J.R.3    Hampson, D.J.4
  • 6
    • 0023392864 scopus 로고
    • Activity of fiber-degrading microorganisms in the pig large intestine
    • Varel V.H. Activity of fiber-degrading microorganisms in the pig large intestine. J Anim Sci 65 (1987) 488-496
    • (1987) J Anim Sci , vol.65 , pp. 488-496
    • Varel, V.H.1
  • 7
    • 0042471955 scopus 로고    scopus 로고
    • Molecular analysis of feces microbiota in elderly individuals using 16S rDNA library and T-RFLP
    • Hayashi H., Sakamoto M., Kitahara M., and Benno Y. Molecular analysis of feces microbiota in elderly individuals using 16S rDNA library and T-RFLP. Microbiol and Immunol 47 (2003) 557-570
    • (2003) Microbiol and Immunol , vol.47 , pp. 557-570
    • Hayashi, H.1    Sakamoto, M.2    Kitahara, M.3    Benno, Y.4
  • 8
    • 0032755259 scopus 로고    scopus 로고
    • Direct analysis of genes encoding 16S rRNA from complex communities reveals many novel molecular species within the human gut
    • Suau A., Bonnet R., Sutren M., Godon J.J., Gibson G.R., Collins M.D., and Dore J. Direct analysis of genes encoding 16S rRNA from complex communities reveals many novel molecular species within the human gut. Appl Environ Microbiol 65 (1999) 4799-4807
    • (1999) Appl Environ Microbiol , vol.65 , pp. 4799-4807
    • Suau, A.1    Bonnet, R.2    Sutren, M.3    Godon, J.J.4    Gibson, G.R.5    Collins, M.D.6    Dore, J.7
  • 9
    • 0029900986 scopus 로고    scopus 로고
    • Human colon content biota studied by ribosomal DNA sequence analysis
    • Wilson K.H., and Blitchington R.B. Human colon content biota studied by ribosomal DNA sequence analysis. Appl Environ Microbiol 62 (1996) 2273-2278
    • (1996) Appl Environ Microbiol , vol.62 , pp. 2273-2278
    • Wilson, K.H.1    Blitchington, R.B.2
  • 10
    • 0031959006 scopus 로고    scopus 로고
    • Application of denaturing gradient gel electrophoresis (DGGE) and temperature gradient gel electrophoresis (TGGE) in microbial ecology
    • Muyzer G., and Smalla K. Application of denaturing gradient gel electrophoresis (DGGE) and temperature gradient gel electrophoresis (TGGE) in microbial ecology. Antonie Leeuwenhoek 73 (1998) 127-141
    • (1998) Antonie Leeuwenhoek , vol.73 , pp. 127-141
    • Muyzer, G.1    Smalla, K.2
  • 11
    • 0027460328 scopus 로고
    • Profiling of complex populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA
    • Muyzer G., de Waal E.C., and Uitterlinden G.A. Profiling of complex populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl Environ Microbiol 59 (1993) 695-700
    • (1993) Appl Environ Microbiol , vol.59 , pp. 695-700
    • Muyzer, G.1    de Waal, E.C.2    Uitterlinden, G.A.3
  • 12
    • 2442616728 scopus 로고    scopus 로고
    • Temporal stability analysis of the microbiota in human feces by denaturing gradient gel electrophoresis using universal and group-specific 16S rRNA gene primers
    • Vanhoutte T., Huys G., De Brandt E., and Swings J. Temporal stability analysis of the microbiota in human feces by denaturing gradient gel electrophoresis using universal and group-specific 16S rRNA gene primers. FEMS Microbiol Ecol 48 (2004) 437-446
    • (2004) FEMS Microbiol Ecol , vol.48 , pp. 437-446
    • Vanhoutte, T.1    Huys, G.2    De Brandt, E.3    Swings, J.4
  • 13
    • 0031684010 scopus 로고    scopus 로고
    • Temperature gradient gel electrophoresis analysis of 16S rRNA from human faecal samples reveals stable and host specific communities of active bacteria
    • Zoetendal E.G., Akkermans A.D.L., and de Vos W.M. Temperature gradient gel electrophoresis analysis of 16S rRNA from human faecal samples reveals stable and host specific communities of active bacteria. Appl Environ Microbiol 64 (1998) 3854-3859
    • (1998) Appl Environ Microbiol , vol.64 , pp. 3854-3859
    • Zoetendal, E.G.1    Akkermans, A.D.L.2    de Vos, W.M.3
  • 14
    • 0037445311 scopus 로고    scopus 로고
    • Effect of fermentable carbohydrates on piglet faecal bacterial communities as revealed by denaturing gradient gel electrophoresis analysis of 16S ribosomal DNA
    • Konstantinov S.R., Zhu W.Y., Williams B.A., Tamminga S., de Vos W.M., and Akkermans A.D.L. Effect of fermentable carbohydrates on piglet faecal bacterial communities as revealed by denaturing gradient gel electrophoresis analysis of 16S ribosomal DNA. FEMS Microbiol Ecol 43 (2003) 225-235
    • (2003) FEMS Microbiol Ecol , vol.43 , pp. 225-235
    • Konstantinov, S.R.1    Zhu, W.Y.2    Williams, B.A.3    Tamminga, S.4    de Vos, W.M.5    Akkermans, A.D.L.6
  • 15
    • 0032925262 scopus 로고    scopus 로고
    • Application of denaturing gradient gel electrophoresis for the analysis of the porcine gastrointestinal microbiota
    • Simpson J.M., McCracken V.J., Gaskin H.R., and Mackie R.I. Application of denaturing gradient gel electrophoresis for the analysis of the porcine gastrointestinal microbiota. J Microbiol Methods 36 (1999) 167-179
    • (1999) J Microbiol Methods , vol.36 , pp. 167-179
    • Simpson, J.M.1    McCracken, V.J.2    Gaskin, H.R.3    Mackie, R.I.4
  • 16
    • 0141453444 scopus 로고    scopus 로고
    • Analysis of 16S rDNA reveals bacterial shift during in vitro fermentation of fermentable carbohydrate using piglet faeces as inoculum
    • Zhu W.Y., Williams B.A., Konstantinov S.R., Tamminga S., De Vos W.M., and Akkermans A.D.L. Analysis of 16S rDNA reveals bacterial shift during in vitro fermentation of fermentable carbohydrate using piglet faeces as inoculum. Anaerobe 9 (2003) 175-180
    • (2003) Anaerobe , vol.9 , pp. 175-180
    • Zhu, W.Y.1    Williams, B.A.2    Konstantinov, S.R.3    Tamminga, S.4    De Vos, W.M.5    Akkermans, A.D.L.6
  • 17
    • 0035677718 scopus 로고    scopus 로고
    • Isolation and genetic characterization of an fragile plant mutant rice
    • [in Chinese with English abstract]
    • Qian Q., Li Y.H., Zeng D.L., Teng S., Wang Z.K., Li X.Y., Dong Z.G., Dai N., Sun L., and Li J.Y. Isolation and genetic characterization of an fragile plant mutant rice. Chin Sci Bull 46 (2001) 1273-1276 [in Chinese with English abstract]
    • (2001) Chin Sci Bull , vol.46 , pp. 1273-1276
    • Qian, Q.1    Li, Y.H.2    Zeng, D.L.3    Teng, S.4    Wang, Z.K.5    Li, X.Y.6    Dong, Z.G.7    Dai, N.8    Sun, L.9    Li, J.Y.10
  • 18
    • 33745253412 scopus 로고    scopus 로고
    • Morphological fractions, chemical compositions and in vitro gas production of rice straw from wild and brittle culm1 variety harvested at different growth stages
    • Wang H.F., Wu Y.M., Liu J.X., and Qian Q. Morphological fractions, chemical compositions and in vitro gas production of rice straw from wild and brittle culm1 variety harvested at different growth stages. Anim Feed Sci Technol 129 (2006) 159-171
    • (2006) Anim Feed Sci Technol , vol.129 , pp. 159-171
    • Wang, H.F.1    Wu, Y.M.2    Liu, J.X.3    Qian, Q.4
  • 19
    • 34547959187 scopus 로고    scopus 로고
    • Effects of feeding whole crop of gene mutant rice on growth performance, nutrient digestibility and carcass quality in growing-finishing pigs
    • [in Chinese with English abstract]
    • Wang H.F., Zhu J.L., Liu J.X., Qian Q., Wu Y.M., and Teng S. Effects of feeding whole crop of gene mutant rice on growth performance, nutrient digestibility and carcass quality in growing-finishing pigs. Acta Veterinaria et Zootechnica Sinica 11 (2005) 1139-1144 [in Chinese with English abstract]
    • (2005) Acta Veterinaria et Zootechnica Sinica , vol.11 , pp. 1139-1144
    • Wang, H.F.1    Zhu, J.L.2    Liu, J.X.3    Qian, Q.4    Wu, Y.M.5    Teng, S.6
  • 20
    • 0025903592 scopus 로고
    • Rapid method for direct extraction of DNA from soil and sediments
    • Tsai Y.L., and Olson B.H. Rapid method for direct extraction of DNA from soil and sediments. Appl Environ Microbiol 57 (1991) 1070-1074
    • (1991) Appl Environ Microbiol , vol.57 , pp. 1070-1074
    • Tsai, Y.L.1    Olson, B.H.2
  • 21
    • 0029796310 scopus 로고    scopus 로고
    • Sequence heterogeneities of genes encoding 16S rRNAs in Paenibacillus polymixa detected by temperature gradient gel electrophoresis
    • Nübel U., Engelen B., Felske A., Snaidr J., Wieshuber A., Amann R.I., Ludwig W., and Backhaus H. Sequence heterogeneities of genes encoding 16S rRNAs in Paenibacillus polymixa detected by temperature gradient gel electrophoresis. J Bacteriol 178 (1996) 5636-5643
    • (1996) J Bacteriol , vol.178 , pp. 5636-5643
    • Nübel, U.1    Engelen, B.2    Felske, A.3    Snaidr, J.4    Wieshuber, A.5    Amann, R.I.6    Ludwig, W.7    Backhaus, H.8
  • 22
    • 0028116158 scopus 로고
    • Rapid silver staining and recovery of pcr products separated on polyacrylamide gels
    • Sanguinetti C.J., Dias N.E., and Simpson A.J. Rapid silver staining and recovery of pcr products separated on polyacrylamide gels. Biotechniques 17 (1994) 914-921
    • (1994) Biotechniques , vol.17 , pp. 914-921
    • Sanguinetti, C.J.1    Dias, N.E.2    Simpson, A.J.3
  • 23
    • 0027486534 scopus 로고
    • The Pearsons product-moment correlation coefficient is better suited for identification of DNA fingerprint profiles than band matching algorithms
    • Häne B.G., Jäger K., and Drexler H. The Pearsons product-moment correlation coefficient is better suited for identification of DNA fingerprint profiles than band matching algorithms. Electrophoresis 14 (1993) 967-972
    • (1993) Electrophoresis , vol.14 , pp. 967-972
    • Häne, B.G.1    Jäger, K.2    Drexler, H.3
  • 25
    • 34547944932 scopus 로고    scopus 로고
    • SAS. Procedures Guide For Personal Computers. Version 6.12. SAS Institute Inc, Cary, NC; 1996.
  • 26
    • 0001857117 scopus 로고
    • 16S/23S rRNA sequencing
    • Stackebrandt E., and Goodfellow W. (Eds), Wiley J and Sons, Chichester
    • Lane D.J. 16S/23S rRNA sequencing. In: Stackebrandt E., and Goodfellow W. (Eds). Nucleic acid techniques in bacterial systematics (1991), Wiley J and Sons, Chichester 115-175
    • (1991) Nucleic acid techniques in bacterial systematics , pp. 115-175
    • Lane, D.J.1
  • 28
    • 0031732597 scopus 로고    scopus 로고
    • Quantification of 16S rRNAs in complex bacterial communities by multiple competitive reverse transcription-PCR in temperature gradient gel electrophoresis fingerprints
    • Felske A., Akkermans A.D.L., and de Vos W.M. Quantification of 16S rRNAs in complex bacterial communities by multiple competitive reverse transcription-PCR in temperature gradient gel electrophoresis fingerprints. Appl Environ Microbiol 64 (1998) 4581-4587
    • (1998) Appl Environ Microbiol , vol.64 , pp. 4581-4587
    • Felske, A.1    Akkermans, A.D.L.2    de Vos, W.M.3
  • 29
    • 0033134723 scopus 로고    scopus 로고
    • Analysis of bacterial communities on historical glass by denaturing gradient gel electrophoresis of PCR-amplified gene fragments coding for 16S rRNA
    • Rolleke S., Gurtner C., Drewello U., Drewello R., Lubitz W., and Weissmann R. Analysis of bacterial communities on historical glass by denaturing gradient gel electrophoresis of PCR-amplified gene fragments coding for 16S rRNA. J Microbiol Meth 36 (1999) 107-114
    • (1999) J Microbiol Meth , vol.36 , pp. 107-114
    • Rolleke, S.1    Gurtner, C.2    Drewello, U.3    Drewello, R.4    Lubitz, W.5    Weissmann, R.6
  • 30
    • 13444310647 scopus 로고    scopus 로고
    • Molecular and microbiological analysis of caecal microbiota in rats fed with diets supplemented either with prebiotics or probiotics
    • Montesi A., García-Albiach R., Pozuelo M.J., Pintado C., Goñi I., and Rotger R. Molecular and microbiological analysis of caecal microbiota in rats fed with diets supplemented either with prebiotics or probiotics. Intl J Food Microbiol 98 (2005) 281-289
    • (2005) Intl J Food Microbiol , vol.98 , pp. 281-289
    • Montesi, A.1    García-Albiach, R.2    Pozuelo, M.J.3    Pintado, C.4    Goñi, I.5    Rotger, R.6
  • 31
    • 0033754245 scopus 로고    scopus 로고
    • Denaturing gradient gel electrophoresis analysis of 16S ribosomal DNA amplicons to monitor changes in faecal bacterial populations of weaning pigs after introduction of Lactobacillus reuteri strain MM53
    • Simpson J.M., McCracken V.J., Gaskin H.R., and Mackie R.I. Denaturing gradient gel electrophoresis analysis of 16S ribosomal DNA amplicons to monitor changes in faecal bacterial populations of weaning pigs after introduction of Lactobacillus reuteri strain MM53. Appl Environ Microbiol 66 (2000) 4705-4714
    • (2000) Appl Environ Microbiol , vol.66 , pp. 4705-4714
    • Simpson, J.M.1    McCracken, V.J.2    Gaskin, H.R.3    Mackie, R.I.4
  • 32
    • 0028028182 scopus 로고
    • Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology
    • Stackebrandt E., and Goebel B.M. Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44 (1994) 846-849
    • (1994) Int J Syst Bacteriol , vol.44 , pp. 846-849
    • Stackebrandt, E.1    Goebel, B.M.2


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