Microsatellite markers reveal geographic population differentiation in Trichophyton rubrum

Journal of Medical Microbiology

Volumn 56, Issue 8, 2007, Pages 1058-1065

  Gräser, Yvonne ^a   Fröhlich, Janine ^a   Presber, Wolfgang ^a   De Hoog, Sybren ^b  

^a HUMBOLDT UNIVERSITY   (Germany)

^b CBS KNAW FUNGAL BIODIVERSITY CENTRE   (Netherlands)

Author keywords

[No Author keywords available]

Indexed keywords

AFRICA; ARTICLE; CLONAL VARIATION; CORRELATION ANALYSIS; DERMATOPHYTE; DIAGNOSTIC TEST; FUNGAL STRAIN; FUNGUS ISOLATION; GENETIC VARIABILITY; GENOTYPE; GEOGRAPHIC DISTRIBUTION; MICROSATELLITE MARKER; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PRIORITY JOURNAL; SPECIES DIFFERENTIATION; TRICHOPHYTON RUBRUM;

EPIDEMIOLOGY, MOLECULAR; GENOME, FUNGAL; HUMANS; MICROSATELLITE REPEATS; MOLECULAR SEQUENCE DATA; TINEA CAPITIS; TINEA PEDIS; TRICHOPHYTON; VARIATION (GENETICS); WORLD HEALTH;

EID: 34547862060     PISSN: 00222615     EISSN: None     Source Type: Journal    
DOI: 10.1099/jmm.0.47138-0     Document Type: Article

References (21)

1. Agapow, P. M. & Burt, A. (2001). Indices of multilocus linkage disequilibrium. Mol Ecol Notes 1, 101-102.
2. Baeza, L. C., Matsumoto, M. T., Almeida, A. M. & Mendes-Giannini, M. J. (2006). Strain differentiation of Trichophyton rubrum by randomly amplified polymorphic DNA and analysis of rDNA nontranscribed spacer. J Med Microbiol 55, 429-436.
3. Cavalli-Sforza, L. L. & Edwards, A. W. F. (1967). Phylogenetic analysis: models and estimation procedures. Am J Hum Genet 19, 233-257.
4. Dieringer, D. & Schlötterer, C. (2003). Microsatellite analyser (MSA): a platform independent analysis tool for large microsatellite data sets. Mol Ecol Notes 3, 167-169.
5. Fisher, M. C., Aanensen, D., de Hoog, G. S. & Vanittanakom, N. (2004). Multilocus microsatellite typing system for Penicillium marneffei reveals spatially structured populations. J Clin Microbiol 42, 5065-5069.
6. Gaedigk, A., Gaedigk, R. & Abdel-Rahman, S. M. (2003). Genetic heterogeneity in the rRNA gene locus of Trichophyton tonsurans. J Clin Microbiol 41, 5478-5487.
7. Graser, Y., Kühnisch, J. & Presber, W. (1999a). Molecular markers reveal exclusively clonal reproduction in Trichophyton rubrum. J Clin Microbiol 37, 3713-3717.
8. Gräser, Y., El Fari, M., Vilgalys, R., Kuijpers, A. F. A., de Hoog, G. S., Presber, W. & Tietz, H. J. (1999b). Phylogeny and taxonomy of the family Arthrodermataceae (dermatophytes) using sequence analysis of the ribosomal ITS region. Med Mycol 37, 105-114.
9. Gräser, Y., de Hoog, G. S. & Summerbell, R. C. (2006). Dermatophytes: recognizing species of clonal fungi. Med Mycol 44, 199-209.
10. Guoling, Y., Xiaohong, Y., Jingrong, L., Liji, J. & Lijia, A. (2006). A study on stability of phenotype and genotype of Trichophyton rubrum. Mycopathologia 161, 205-212.
11. Jackson, C. J., Barton, R. C., Kelly, S. L. & Evans, E. G. (2000). Strain identification of Trichophyton rubrum by specific amplification of subrepeat elements in the ribosomal DNA nontranscribed spacer. J Clin Microbiol 38, 4527-4534.
12. Kane, J., Summerbell, R., Sigler, L., Krajden, S. & Land, G. (1997). Laboratory Handbook of Dermatophytes. Belmont, USA: Star Publishing.
13. Kardjeva, V., Summerbell, R., Kantardjiev, T., Devliotou-Panagiotidou, D., Sotiriou, E. & Gräser, Y. (2006). Forty-eight-hour diagnosis of onychomycosis with subtyping of Trichophyton rubrum strains. J Clin Microbiol 44, 1419-1427.
14. Ohst, T., de Hoog, G. S., Presber, W., Stavrakieva, V. & Gräser, Y. (2004). Origins of microsatellite diversity in the Trichophyton rubrum-T. violaceum clade (Dermatophytes). J Clin Microbiol 42, 4444-4448.
15. Pritchard, J. K., Stephens, M. & Donnelly, P. (2000). Inference of population structure using multilocus genotype data. Genetics 155, 945-959.
16. Rippon, J. W. (1988). Medical Mycology: the Pathogenic Fungi and Pathogenic Actinomycetes. Philadelphia: W. B. Saunders.
17. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
18. Taylor, J. W., Jacobson, D. J. & Fisher, M. C. (1999). The evolution of asexual fungi: reproduction, speciation and classification. Annu Rev Phytopathol 37, 197-246.
19. Weir, B. S. (1996). Genetic Data Analysis II. Sunderland: Sinauer.
20. Yazdanparast, A., Jackson, C. J., Barton, R. C. & Evans, E. G. (2003). Molecular strain typing of Trichophyton rubrum indicates multiple strain involvement in onychomycosis. Br J Dermatol 148, 51-54.
21. Zhong, Z., Li, R., Li, D. & Wang, D. (1997). Typing of common dermatophytes by random amplification of polymorphic DNA. Jpn J Med Mycol 38, 239-246.