AutoCSA, an algorithm for high throughput DNA sequence variant detection in cancer genomes

Bioinformatics

Volumn 23, Issue 13, 2007, Pages 1689-1691

  Dicks, E ^a   Teague, J W ^a   Stephens, P ^a   Raine, K ^a   Yates, A ^a   Mattocks, C ^b   Tarpey, P ^a   Butler, A ^a   Menzies, A ^a   Richardson, D ^a   Jenkinson, A ^a   Davies, H ^a   Edkins, S ^a   Forbes, S ^a   Gray, K ^a   Greenman, C ^a   Shepherd, R ^a   Stratton, M R ^a   Futreal, P A ^a   Wooster, R ^a  

^a WELLCOME TRUST SANGER INSTITUTE   (United Kingdom)

^b SALISBURY DISTRICT HOSPITAL   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; ANEUPLOIDY; CANCER; CONFERENCE PAPER; DNA SEQUENCE; GENE MUTATION; GENETIC VARIABILITY; HIGH THROUGHPUT SCREENING; PRIORITY JOURNAL; TUMOR GENE;

EID: 34547830420     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/btm152     Document Type: Conference Paper

References (6)

1. Manaster, C. et al. (2005) InSNP: A tool for automated detection and visualization of SNPs and InDels. Hum. Mutat., 26, 11-19.
2. Mattocks, C. et al. (2000) Comparative sequence analysis (CSA): A new sequence-based method for the identification and characterization of mutations in DNA. Hum. Mutat., 16, 437-443.
3. Nickerson, D.A. et al. (1997) PolyPhred: Automating the detection and genotyping of single nucleotide substitutions using fluorescence-based resequencing. Nucleic Acids Res., 25, 2745-2751.
4. Stephens, M. et al. (2006) Automating sequence-based detection and genotyping of SNPs from diploid samples. Nat. Genet., 38, 375-381.
5. Weckx, S. et al. (2005) novoSNP, a novel computational tool for sequence variation discovery. Genome Res., 15, 436-442.
6. Zhang, J. et al. (2005) SNPdetector: A software tool for sensitive and accurate SNP detection. PLoS Comput. Biol., 1, e53.