-
1
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul, S. F., T. L. Madden, A. A. Schäffer, J. Zhang, Z. Zhang, W. Miller, and D. J. Lipman. 1997. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25:3389-3402.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schäffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
2
-
-
0033167936
-
The response regulator expM is essential for the virulence of Erwinia carotovora subsp. carotovora and acts negatively on the sigma factor RpoS (sigma s)
-
Andersson, R. A., E. T. Palva, and M. Pirhonen. 1999. The response regulator expM is essential for the virulence of Erwinia carotovora subsp. carotovora and acts negatively on the sigma factor RpoS (sigma s). Mol. Plant-Microbe Interact. 12:575-584.
-
(1999)
Mol. Plant-Microbe Interact
, vol.12
, pp. 575-584
-
-
Andersson, R.A.1
Palva, E.T.2
Pirhonen, M.3
-
3
-
-
0032456891
-
Proposed signal transduction role for conserved CheY residue Thr87, a member of the response regulator active-site quintet
-
Appleby, J. L., and R. B. Bourret. 1998. Proposed signal transduction role for conserved CheY residue Thr87, a member of the response regulator active-site quintet. J. Bacteriol. 180:3563-3569.
-
(1998)
J. Bacteriol
, vol.180
, pp. 3563-3569
-
-
Appleby, J.L.1
Bourret, R.B.2
-
4
-
-
0344813718
-
NarL dimerization? Suggestive evidence from a new crystal form
-
Baikalov, I., I. Schroder, M. Kaczor-Grzeskowiak, D. Cascio, R. P. Gunsalus, and R. E. Dickerson. 1998. NarL dimerization? Suggestive evidence from a new crystal form. Biochemistry 37:3665-3676.
-
(1998)
Biochemistry
, vol.37
, pp. 3665-3676
-
-
Baikalov, I.1
Schroder, I.2
Kaczor-Grzeskowiak, M.3
Cascio, D.4
Gunsalus, R.P.5
Dickerson, R.E.6
-
5
-
-
33645881935
-
Regulation of bacterial virulence by two-component systems
-
Beier, D., and R. Gross. 2006. Regulation of bacterial virulence by two-component systems. Curr. Opin. Microbiol. 9:143-152.
-
(2006)
Curr. Opin. Microbiol
, vol.9
, pp. 143-152
-
-
Beier, D.1
Gross, R.2
-
6
-
-
0033573063
-
Conformational changes induced by phosphorylation of the FixJ receiver domain
-
Birck. C., L. Mourey, P. Gouet, B. Fabry, J. Schumacher, P. Rousseau, D. Kahn, and J. P. Samama. 1999. Conformational changes induced by phosphorylation of the FixJ receiver domain. Structure 7:1505-1515.
-
(1999)
Structure
, vol.7
, pp. 1505-1515
-
-
Birck, C.1
Mourey, L.2
Gouet, P.3
Fabry, B.4
Schumacher, J.5
Rousseau, P.6
Kahn, D.7
Samama, J.P.8
-
7
-
-
0025341353
-
Depressed light emission by symbiotic Vibrio fischeri of the sepiolid squid Euprymna scolopes
-
Boettcher, K. J., and E. G. Ruby. 1990. Depressed light emission by symbiotic Vibrio fischeri of the sepiolid squid Euprymna scolopes. J. Bacteriol. 172:3701-3706.
-
(1990)
J. Bacteriol
, vol.172
, pp. 3701-3706
-
-
Boettcher, K.J.1
Ruby, E.G.2
-
8
-
-
34447307386
-
Bioluminescence in Vibrio fischeri is controlled by the redox-responsive regulator ArcA
-
Bose, J. L., U. Kim, W. Bartkowski, R. P. Gunsalus, A. M. Overley, N. L. Lyell, K. L. Visick, and E. V. Stabb. 2007. Bioluminescence in Vibrio fischeri is controlled by the redox-responsive regulator ArcA. Mol. Microbiol. 65:538-553.
-
(2007)
Mol. Microbiol
, vol.65
, pp. 538-553
-
-
Bose, J.L.1
Kim, U.2
Bartkowski, W.3
Gunsalus, R.P.4
Overley, A.M.5
Lyell, N.L.6
Visick, K.L.7
Stabb, E.V.8
-
9
-
-
0025021988
-
Conserved aspartate residues and phosphorylation in signal transduction by the chemotaxis protein CheY
-
Bourret, R. B., J. F. Hess, and M. I. Simon. 1990. Conserved aspartate residues and phosphorylation in signal transduction by the chemotaxis protein CheY. Proc. Natl. Acad. Sci. USA 87:41-45.
-
(1990)
Proc. Natl. Acad. Sci. USA
, vol.87
, pp. 41-45
-
-
Bourret, R.B.1
Hess, J.F.2
Simon, M.I.3
-
10
-
-
33646382403
-
Two-component signal transduction systems, environmental signals, and virulence
-
Calva, E., and R. Oropeza. 2006. Two-component signal transduction systems, environmental signals, and virulence. Microb. Ecol. 51:166-176.
-
(2006)
Microb. Ecol
, vol.51
, pp. 166-176
-
-
Calva, E.1
Oropeza, R.2
-
11
-
-
77957094820
-
Episomes
-
Campbell, A. 1962. Episomes. Adv. Genet. 11:101-145.
-
(1962)
Adv. Genet
, vol.11
, pp. 101-145
-
-
Campbell, A.1
-
12
-
-
0034737324
-
NMR structure of activated CheY
-
Cho, H. S., S. Y. Lee, D. Yan, X. Pan, J. S. Parkinson, S. Kustu, D. E. Wemmer, and J. G. Pelton. 2000. NMR structure of activated CheY. J. Mol. Biol. 297:543-551.
-
(2000)
J. Mol. Biol
, vol.297
, pp. 543-551
-
-
Cho, H.S.1
Lee, S.Y.2
Yan, D.3
Pan, X.4
Parkinson, J.S.5
Kustu, S.6
Wemmer, D.E.7
Pelton, J.G.8
-
13
-
-
0033962752
-
Phosphorylation of the flagellar regulatory protein FlrC is necessary for Vibrio cholerae motility and enhanced colonization
-
Correa, N. E., C. M. Lauriano, R. McGee, and K. E. Klose. 2000. Phosphorylation of the flagellar regulatory protein FlrC is necessary for Vibrio cholerae motility and enhanced colonization. Mol. Microbiol. 35:743-755.
-
(2000)
Mol. Microbiol
, vol.35
, pp. 743-755
-
-
Correa, N.E.1
Lauriano, C.M.2
McGee, R.3
Klose, K.E.4
-
14
-
-
0003455675
-
-
Cold Spring Harbor Laboratory, Cold Spring Harbor, NY
-
Davis, R. W., D. Botstein, and J. R. Roth. 1980. Advanced bacterial genetics. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY.
-
(1980)
Advanced bacterial genetics
-
-
Davis, R.W.1
Botstein, D.2
Roth, J.R.3
-
15
-
-
34547809701
-
-
DeLoney, C., A. Wolfe, and K. L. Visick. 2003. Abstr. 103rd Gen. Meet. Am. Soc. Microbiol., abstr. N-244. American Society for Microbiology, Washington, DC.
-
DeLoney, C., A. Wolfe, and K. L. Visick. 2003. Abstr. 103rd Gen. Meet. Am. Soc. Microbiol., abstr. N-244. American Society for Microbiology, Washington, DC.
-
-
-
-
16
-
-
2142802647
-
Chemoattraction of Vibrio fischeri to serine, nucleosides, and N-acetylneuraminic acid, a component of squid light organ mucus
-
DeLoney-Marino, C. R., A. J. Wolfe, and K. L. Visick. 2003. Chemoattraction of Vibrio fischeri to serine, nucleosides, and N-acetylneuraminic acid, a component of squid light organ mucus. Appl. Environ. Microbiol. 69:7527-7530.
-
(2003)
Appl. Environ. Microbiol
, vol.69
, pp. 7527-7530
-
-
DeLoney-Marino, C.R.1
Wolfe, A.J.2
Visick, K.L.3
-
17
-
-
0027725286
-
The deduced amino-acid sequence of the cloned cpxR gene suggests the protein is the cognate regulator for the membrane sensor, CpxA, in a two-component signal transduction system of Escherichia coli
-
Dong, J., S. Iuchi, H. S. Kwan, Z. Lu, and E. C. Lin. 1993. The deduced amino-acid sequence of the cloned cpxR gene suggests the protein is the cognate regulator for the membrane sensor, CpxA, in a two-component signal transduction system of Escherichia coli. Gene 136:227-230.
-
(1993)
Gene
, vol.136
, pp. 227-230
-
-
Dong, J.1
Iuchi, S.2
Kwan, H.S.3
Lu, Z.4
Lin, E.C.5
-
18
-
-
23844555084
-
Characterization of pES213, a small mobilizable plasmid from Vibrio fischeri
-
Dunn, A. K., M. O. Martin, and E. Stabb. 2005. Characterization of pES213, a small mobilizable plasmid from Vibrio fischeri. Plasmid 54:114-134.
-
(2005)
Plasmid
, vol.54
, pp. 114-134
-
-
Dunn, A.K.1
Martin, M.O.2
Stabb, E.3
-
19
-
-
33644859966
-
New rfp- and pES213-derived tools for analyzing symbiotic Vibrio fischeri reveal patterns of infection and lux expression in situ
-
Dunn, A. K., D. S. Millikan, D. M. Adin, J. L. Bose, and E. V. Stabb. 2006. New rfp- and pES213-derived tools for analyzing symbiotic Vibrio fischeri reveal patterns of infection and lux expression in situ. Appl. Environ. Microbiol. 72:802-810.
-
(2006)
Appl. Environ. Microbiol
, vol.72
, pp. 802-810
-
-
Dunn, A.K.1
Millikan, D.S.2
Adin, D.M.3
Bose, J.L.4
Stabb, E.V.5
-
20
-
-
0019890088
-
Structural identification of autoinducer of Photobacterium fischeri luciferase
-
Eberhard, A., A. L. Burlingame, C. Eberhard, G. L. Kenyon, K. H. Nealson, and N. J. Oppenheimer. 1981. Structural identification of autoinducer of Photobacterium fischeri luciferase. Biochemistry 28:2444-2449.
-
(1981)
Biochemistry
, vol.28
, pp. 2444-2449
-
-
Eberhard, A.1
Burlingame, A.L.2
Eberhard, C.3
Kenyon, G.L.4
Nealson, K.H.5
Oppenheimer, N.J.6
-
21
-
-
0020724032
-
Bacterial bioluminescence: Isolation and genetic analysis of functions from Vibrio fischeri
-
Engebrecht, J., K. Nealson, and M. Silverman. 1983. Bacterial bioluminescence: isolation and genetic analysis of functions from Vibrio fischeri. Cell 32:773-781.
-
(1983)
Cell
, vol.32
, pp. 773-781
-
-
Engebrecht, J.1
Nealson, K.2
Silverman, M.3
-
22
-
-
0009294561
-
Identification of genes and gene products necessary for bacterial bioluminescence
-
Engebrecht, J., and M. Silverman. 1984. Identification of genes and gene products necessary for bacterial bioluminescence. Proc. Natl. Acad. Sci. USA 81:4154-4158.
-
(1984)
Proc. Natl. Acad. Sci. USA
, vol.81
, pp. 4154-4158
-
-
Engebrecht, J.1
Silverman, M.2
-
23
-
-
0028270395
-
D-dependent gene encodes a novel protein with both CheW and CheY homologous domains
-
D-dependent gene encodes a novel protein with both CheW and CheY homologous domains. J. Bacteriol. 176:2727-2735.
-
(1994)
J. Bacteriol
, vol.176
, pp. 2727-2735
-
-
Fredrick, K.L.1
Helmann, J.D.2
-
24
-
-
0023388334
-
Nucleotide sequence of the uhp region of Escherichia coli
-
Friedrich, M. J., and R. J. Kadner. 1987. Nucleotide sequence of the uhp region of Escherichia coli. J. Bacteriol. 169:3556-3563.
-
(1987)
J. Bacteriol
, vol.169
, pp. 3556-3563
-
-
Friedrich, M.J.1
Kadner, R.J.2
-
25
-
-
33744803220
-
Roles of bacterial regulators in the symbiosis between Vibrio fischeri and Euprymna scolopes
-
J. Overmann ed, Springer-Verlag, Berlin, Germany
-
Geszvain, K., and K. L. Visick. 2005. Roles of bacterial regulators in the symbiosis between Vibrio fischeri and Euprymna scolopes, p. 277-290. In J. Overmann (ed.), Molecular basis of symbiosis. Springer-Verlag, Berlin, Germany.
-
(2005)
Molecular basis of symbiosis
, pp. 277-290
-
-
Geszvain, K.1
Visick, K.L.2
-
26
-
-
0028054120
-
Effect of transposon-induced motility mutations on colonization of the host light organ by Vibrio fischeri
-
Graf, J., P. V. Dunlap, and E. G. Ruby. 1994. Effect of transposon-induced motility mutations on colonization of the host light organ by Vibrio fischeri. J. Bacteriol. 176:6986-6991.
-
(1994)
J. Bacteriol
, vol.176
, pp. 6986-6991
-
-
Graf, J.1
Dunlap, P.V.2
Ruby, E.G.3
-
27
-
-
0024604475
-
Nucleotide sequence of the narL gene that is involved in global regulation of nitrate controlled respiratory genes of Escherichia coli
-
Gunsalus, R. P., L. V. Kalman, and R. R. Stewart. 1989. Nucleotide sequence of the narL gene that is involved in global regulation of nitrate controlled respiratory genes of Escherichia coli. Nucleic Acids Res. 17:1965-1975.
-
(1989)
Nucleic Acids Res
, vol.17
, pp. 1965-1975
-
-
Gunsalus, R.P.1
Kalman, L.V.2
Stewart, R.R.3
-
28
-
-
9244255815
-
Systematic inactivation and phenotypic characterization of two-component signal transduction systems of Enterococcus faecalis V583
-
Hancock, L. E., and M. Perego. 2004. Systematic inactivation and phenotypic characterization of two-component signal transduction systems of Enterococcus faecalis V583. J. Bacteriol. 186:7951-7958.
-
(2004)
J. Bacteriol
, vol.186
, pp. 7951-7958
-
-
Hancock, L.E.1
Perego, M.2
-
29
-
-
0026458378
-
Amino acid substitution matrices from protein blocks
-
Henikoff, S., and J. G. Henikoff. 1992. Amino acid substitution matrices from protein blocks. Proc. Natl. Acad. Sci. USA 89:10915-10919.
-
(1992)
Proc. Natl. Acad. Sci. USA
, vol.89
, pp. 10915-10919
-
-
Henikoff, S.1
Henikoff, J.G.2
-
30
-
-
0025047590
-
Transposon vectors containing non-antibiotic resistance selection markers for cloning and stable chromosomal insertion of foreign genes in gram-negative bacteria
-
Herrero, M., V. de Lorenzo, and K. N. Timmis. 1990. Transposon vectors containing non-antibiotic resistance selection markers for cloning and stable chromosomal insertion of foreign genes in gram-negative bacteria. J. Bacteriol. 172:6557-6567.
-
(1990)
J. Bacteriol
, vol.172
, pp. 6557-6567
-
-
Herrero, M.1
de Lorenzo, V.2
Timmis, K.N.3
-
31
-
-
0141928573
-
Beta-lactam resistance modulated by the overexpression of response regulators of two-component signal transduction systems in Escherichia coli
-
Hirakawa, H., K. Nishino, J. Yamada, T. Hirata, and A. Yamaguchi. 2003. Beta-lactam resistance modulated by the overexpression of response regulators of two-component signal transduction systems in Escherichia coli. J. Antimicrob. Chemother. 52:576-582.
-
(2003)
J. Antimicrob. Chemother
, vol.52
, pp. 576-582
-
-
Hirakawa, H.1
Nishino, K.2
Yamada, J.3
Hirata, T.4
Yamaguchi, A.5
-
32
-
-
0003438040
-
-
Hoch, J. A, and T. J. Silhavy ed, ASM Press, Washington, DC
-
Hoch, J. A., and T. J. Silhavy (ed.). 1995. Two-component signal transduction. ASM Press, Washington, DC.
-
(1995)
Two-component signal transduction
-
-
-
33
-
-
0026643236
-
Structure and function of the uhp genes for the sugar phosphate transport system in Escherichia coli and Salmonella typhimurium
-
Island, M. D., B. Y. Wei, and R. J. Kadner. 1992. Structure and function of the uhp genes for the sugar phosphate transport system in Escherichia coli and Salmonella typhimurium. J. Bacteriol. 174:2754-2762.
-
(1992)
J. Bacteriol
, vol.174
, pp. 2754-2762
-
-
Island, M.D.1
Wei, B.Y.2
Kadner, R.J.3
-
34
-
-
0035941366
-
Phosphorylation of the response regulator CheV is required for adaptation to attractants during Bacillus subtilis chemotaxis
-
Karatan, E., M. M. Saulmon, M. W. Bunn, and G. W. Ordal. 2001. Phosphorylation of the response regulator CheV is required for adaptation to attractants during Bacillus subtilis chemotaxis. J. Biol. Chem. 276:43618-43626.
-
(2001)
J. Biol. Chem
, vol.276
, pp. 43618-43626
-
-
Karatan, E.1
Saulmon, M.M.2
Bunn, M.W.3
Ordal, G.W.4
-
35
-
-
0031969521
-
Distinct roles of an alternative sigma factor during both free-swimming and colonizing phases of the Vibrio cholerae pathogenic cycle
-
Klose, K. E., and J. J. Mekalanos. 1998. Distinct roles of an alternative sigma factor during both free-swimming and colonizing phases of the Vibrio cholerae pathogenic cycle. Mol. Microbiol. 28:501-520.
-
(1998)
Mol. Microbiol
, vol.28
, pp. 501-520
-
-
Klose, K.E.1
Mekalanos, J.J.2
-
36
-
-
0035212494
-
Comprehensive DNA microarray analysis of Bacillus subtilis two-component regulatory systems
-
Kobayashi, K., M. Ogura, H. Yamaguchi, K. Yoshida, N. Ogasawara, T. Tanaka, and Y. Fujita. 2001. Comprehensive DNA microarray analysis of Bacillus subtilis two-component regulatory systems. J. Bacteriol. 183:7365-7370.
-
(2001)
J. Bacteriol
, vol.183
, pp. 7365-7370
-
-
Kobayashi, K.1
Ogura, M.2
Yamaguchi, H.3
Yoshida, K.4
Ogasawara, N.5
Tanaka, T.6
Fujita, Y.7
-
37
-
-
0032854781
-
Domain organization and molecular characterization of 13 two-component systems identified by genome sequencing of Streptococcus pneumoniae
-
Lange, R., C. Wagner, A. de Saizieu, N. Flint, J. Molnos, M. Stieger, P. Caspers, M. Kamber, W. Keck, and K. E. Amrein. 1999. Domain organization and molecular characterization of 13 two-component systems identified by genome sequencing of Streptococcus pneumoniae. Gene 237:223-234.
-
(1999)
Gene
, vol.237
, pp. 223-234
-
-
Lange, R.1
Wagner, C.2
de Saizieu, A.3
Flint, N.4
Molnos, J.5
Stieger, M.6
Caspers, P.7
Kamber, M.8
Keck, W.9
Amrein, K.E.10
-
38
-
-
0035174242
-
Crystal structure of an activated response regulator bound to its target
-
Lee, S. Y., H. S. Cho, J. G. Pelton, D. Yan, R. K. Henderson, D. S. King, L. Huang, S. Kustu, E. A. Berry, and D. E. Wemmer. 2001. Crystal structure of an activated response regulator bound to its target. Nat. Struct. Biol. 8:52-56.
-
(2001)
Nat. Struct. Biol
, vol.8
, pp. 52-56
-
-
Lee, S.Y.1
Cho, H.S.2
Pelton, J.G.3
Yan, D.4
Henderson, R.K.5
King, D.S.6
Huang, L.7
Kustu, S.8
Berry, E.A.9
Wemmer, D.E.10
-
39
-
-
0033584875
-
Phosphorylated aspartate in the structure of a response regulator protein
-
Lewis, R. J., J. A. Brannigan, K. Muchova, I. Barak, and A. J. Wilkinson. 1999. Phosphorylated aspartate in the structure of a response regulator protein. J. Mol. Biol. 294:9-15.
-
(1999)
J. Mol. Biol
, vol.294
, pp. 9-15
-
-
Lewis, R.J.1
Brannigan, J.A.2
Muchova, K.3
Barak, I.4
Wilkinson, A.J.5
-
40
-
-
0025881094
-
Roles of the highly conserved aspartate and lysine residues in the response regulator of bacterial chemotaxis
-
Lukat, G. S., B. H. Lee, J. M. Mottonen, A. M. Stock, and J. B. Stock. 1991. Roles of the highly conserved aspartate and lysine residues in the response regulator of bacterial chemotaxis. J. Biol. Chem. 266:8348-8354.
-
(1991)
J. Biol. Chem
, vol.266
, pp. 8348-8354
-
-
Lukat, G.S.1
Lee, B.H.2
Mottonen, J.M.3
Stock, A.M.4
Stock, J.B.5
-
41
-
-
2942520958
-
Vibrio fischeri LuxS and AinS: Comparative study of two signal synthases
-
Lupp, C., and E. G. Ruby. 2004. Vibrio fischeri LuxS and AinS: comparative study of two signal synthases. J. Bacteriol. 186:3873-3881.
-
(2004)
J. Bacteriol
, vol.186
, pp. 3873-3881
-
-
Lupp, C.1
Ruby, E.G.2
-
42
-
-
18944371667
-
Vibrio fischeri utilizes two quorum-sensing systems for the regulation of early and late colonization factors
-
Lupp, C., and E. G. Ruby. 2005. Vibrio fischeri utilizes two quorum-sensing systems for the regulation of early and late colonization factors. J. Bacteriol. 187:3620-3629.
-
(2005)
J. Bacteriol
, vol.187
, pp. 3620-3629
-
-
Lupp, C.1
Ruby, E.G.2
-
43
-
-
0141818906
-
The Vibrio fischeri quorum-sensing systems ain and lux sequentially induce luminescence gene expression and are important for persistence in the squid host
-
Lupp, C., M. Urbanowski, E. P. Greenberg, and E. G. Ruby. 2003. The Vibrio fischeri quorum-sensing systems ain and lux sequentially induce luminescence gene expression and are important for persistence in the squid host. Mol. Microbiol. 50:319-331.
-
(2003)
Mol. Microbiol
, vol.50
, pp. 319-331
-
-
Lupp, C.1
Urbanowski, M.2
Greenberg, E.P.3
Ruby, E.G.4
-
44
-
-
0022533109
-
Nucleotide sequence of the phoB gene, the positive regulatory gene for the phosphate regulon of Escherichia coli K-12
-
Makino, K., H. Shinagawa, M. Amemura, and A. Nakata. 1986. Nucleotide sequence of the phoB gene, the positive regulatory gene for the phosphate regulon of Escherichia coli K-12. J. Mol. Biol. 190:37-44.
-
(1986)
J. Mol. Biol
, vol.190
, pp. 37-44
-
-
Makino, K.1
Shinagawa, H.2
Amemura, M.3
Nakata, A.4
-
45
-
-
3242887157
-
CD-Search: Protein domain annotations on the fly
-
Marchler-Bauer, A., and S. H. Bryant. 2004. CD-Search: protein domain annotations on the fly. Nucleic Acids Res. 32:W327-W331.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Marchler-Bauer, A.1
Bryant, S.H.2
-
46
-
-
0031568318
-
The DNA-binding domain of OmpR: Crystal structures of a winged helix transcription factor
-
Martinez-Hackert, E., and A. M. Stock. 1997. The DNA-binding domain of OmpR: crystal structures of a winged helix transcription factor. Structure 5:109-124.
-
(1997)
Structure
, vol.5
, pp. 109-124
-
-
Martinez-Hackert, E.1
Stock, A.M.2
-
47
-
-
0031566431
-
Structural relationships in the OmpR family of winged-helix transcription factors
-
Martinez-Hackert, E., and A. M. Stock. 1997. Structural relationships in the OmpR family of winged-helix transcription factors. J. Mol. Biol. 269:301-312.
-
(1997)
J. Mol. Biol
, vol.269
, pp. 301-312
-
-
Martinez-Hackert, E.1
Stock, A.M.2
-
48
-
-
0021162488
-
Overexpression and sequence of the Escherichia coli cheY gene and biochemical activities of the CheY protein
-
Matsumura, P., J. J. Rydel, R. Linzmeier, and D. Vacante. 1984. Overexpression and sequence of the Escherichia coli cheY gene and biochemical activities of the CheY protein. J. Bacteriol. 160:36-41.
-
(1984)
J. Bacteriol
, vol.160
, pp. 36-41
-
-
Matsumura, P.1
Rydel, J.J.2
Linzmeier, R.3
Vacante, D.4
-
49
-
-
0142104409
-
Population dynamics of Vibrio fischeri during infection of Euprymna scolopes
-
McCann, J., E. V. Stabb, D. S. Millikan, and E. G. Ruby. 2003. Population dynamics of Vibrio fischeri during infection of Euprymna scolopes. Appl. Environ. Microbiol. 69:5928-5934.
-
(2003)
Appl. Environ. Microbiol
, vol.69
, pp. 5928-5934
-
-
McCann, J.1
Stabb, E.V.2
Millikan, D.S.3
Ruby, E.G.4
-
50
-
-
0036249787
-
Alterations in Vibrio fischeri motility correlate with a delay in symbiosis initiation and are associated with additional symbiotic colonization defects
-
Millikan, D. S., and E. G. Ruby. 2002. Alterations in Vibrio fischeri motility correlate with a delay in symbiosis initiation and are associated with additional symbiotic colonization defects. Appl. Environ. Microbiol. 68:2519-2528.
-
(2002)
Appl. Environ. Microbiol
, vol.68
, pp. 2519-2528
-
-
Millikan, D.S.1
Ruby, E.G.2
-
51
-
-
0037610101
-
54-dependent transcriptional activator in Vibrio fischeri, is required for motility and symbiotic light-organ colonization
-
54-dependent transcriptional activator in Vibrio fischeri, is required for motility and symbiotic light-organ colonization. J. Bacteriol. 185:3547-3557.
-
(2003)
J. Bacteriol
, vol.185
, pp. 3547-3557
-
-
Millikan, D.S.1
Ruby, E.G.2
-
52
-
-
0023664155
-
The complete nucleotide sequence of the glnALG operon of Escherichia coli K12
-
Miranda-Rios, J., R. Sanchez-Pescador, M. Urdea, and A. A. Covarrubias. 1987. The complete nucleotide sequence of the glnALG operon of Escherichia coli K12. Nucleic Acids Res. 15:2757-2770.
-
(1987)
Nucleic Acids Res
, vol.15
, pp. 2757-2770
-
-
Miranda-Rios, J.1
Sanchez-Pescador, R.2
Urdea, M.3
Covarrubias, A.A.4
-
53
-
-
0034061824
-
Control of bioluminescence in Vibrio fischeri by the LuxO signal response regulator
-
Miyamato, C. M., Y. H. Lin, and E. A. Meighen. 2000. Control of bioluminescence in Vibrio fischeri by the LuxO signal response regulator. Mol. Microbiol. 36:594-607.
-
(2000)
Mol. Microbiol
, vol.36
, pp. 594-607
-
-
Miyamato, C.M.1
Lin, Y.H.2
Meighen, E.A.3
-
54
-
-
0031589010
-
Compilation of all genes encoding two-component phosphotransfer signal transducers in the genome of Escherichia coli
-
Mizuno, T. 1997. Compilation of all genes encoding two-component phosphotransfer signal transducers in the genome of Escherichia coli. DNA Res. 4:161-168.
-
(1997)
DNA Res
, vol.4
, pp. 161-168
-
-
Mizuno, T.1
-
55
-
-
0027340543
-
54 bacterial enhancer-binding protein family: Mechanism of action and phylogenetic relationship of their functional domains
-
54 bacterial enhancer-binding protein family: mechanism of action and phylogenetic relationship of their functional domains. J. Bacteriol. 175:6067-6074.
-
(1993)
J. Bacteriol
, vol.175
, pp. 6067-6074
-
-
Morett, E.1
Segovia, L.2
-
56
-
-
0027248437
-
Prokaryotic enhancer-binding proteins reflect eukaryote-like modularity: The puzzle of nitrogen regulatory protein C
-
North, A. K., K. E. Klose, K. M. Stedman, and S. Kustu. 1993. Prokaryotic enhancer-binding proteins reflect eukaryote-like modularity: the puzzle of nitrogen regulatory protein C. J. Bacteriol. 175:4267-4273.
-
(1993)
J. Bacteriol
, vol.175
, pp. 4267-4273
-
-
North, A.K.1
Klose, K.E.2
Stedman, K.M.3
Kustu, S.4
-
57
-
-
4344568725
-
The winnowing: Establishing the squid-Vibrio symbiosis
-
Nyholm, S. V., and M. J. McFall-Ngai. 2004. The winnowing: establishing the squid-Vibrio symbiosis. Nat. Rev. Microbiol. 2:632-642.
-
(2004)
Nat. Rev. Microbiol
, vol.2
, pp. 632-642
-
-
Nyholm, S.V.1
McFall-Ngai, M.J.2
-
58
-
-
0034730156
-
Establishment of an animal-bacterial association: Recruiting symbiotic vibrios from the environment
-
Nyholm, S. V., E. V. Stabb, E. G. Ruby, and M. J. McFall-Ngai. 2000. Establishment of an animal-bacterial association: recruiting symbiotic vibrios from the environment. Proc. Natl. Acad. Sci. USA 97:10231-10235.
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 10231-10235
-
-
Nyholm, S.V.1
Stabb, E.V.2
Ruby, E.G.3
McFall-Ngai, M.J.4
-
59
-
-
33751378939
-
Diguanylate cyclases control magnesium-dependent motility of Vibrio fischeri
-
O'Shea, T. M., A. H. Klein, K. Geszvain, A. J. Wolfe, and K. L. Visick. 2006. Diguanylate cyclases control magnesium-dependent motility of Vibrio fischeri. J. Bacteriol. 188:8196-8205.
-
(2006)
J. Bacteriol
, vol.188
, pp. 8196-8205
-
-
O'Shea, T.M.1
Klein, A.H.2
Geszvain, K.3
Wolfe, A.J.4
Visick, K.L.5
-
60
-
-
0024598928
-
Function of a bacterial activator protein that binds to transcriptional enhancers
-
Popham, D. L., D. Szeto, J. Keener, and S. Kustu. 1989. Function of a bacterial activator protein that binds to transcriptional enhancers. Science 243:629-635.
-
(1989)
Science
, vol.243
, pp. 629-635
-
-
Popham, D.L.1
Szeto, D.2
Keener, J.3
Kustu, S.4
-
61
-
-
0034744733
-
28-dependent flagellar gene transcription hierarchy of Vibrio cholerae
-
28-dependent flagellar gene transcription hierarchy of Vibrio cholerae. Mol. Microbiol. 39:1595-1609.
-
(2001)
Mol. Microbiol
, vol.39
, pp. 1595-1609
-
-
Prouty, M.G.1
Correa, N.E.2
Klose, K.E.3
-
62
-
-
0027251261
-
Dual response regulators (NarL and NarP) interact with dual sensors (NarX and NarQ) to control nitrate- and nitrite-regulated gene expression in Escherichia coli K-12
-
Rabin, R. S., and V. Stewart. 1993. Dual response regulators (NarL and NarP) interact with dual sensors (NarX and NarQ) to control nitrate- and nitrite-regulated gene expression in Escherichia coli K-12. J. Bacteriol. 175:3259-3268.
-
(1993)
J. Bacteriol
, vol.175
, pp. 3259-3268
-
-
Rabin, R.S.1
Stewart, V.2
-
63
-
-
0028333653
-
Chemotaxis in Bacillus subtilis requires either of two functionally redundant CheW homologs
-
Rosario, M. M., K. L. Fredrick, G. W. Ordal, and J. D. Helmann. 1994. Chemotaxis in Bacillus subtilis requires either of two functionally redundant CheW homologs. J. Bacteriol. 176:2736-2739.
-
(1994)
J. Bacteriol
, vol.176
, pp. 2736-2739
-
-
Rosario, M.M.1
Fredrick, K.L.2
Ordal, G.W.3
Helmann, J.D.4
-
64
-
-
0029837341
-
Lessons from a cooperative, bacterial-animal association: The Vibrio fischeri-Euprymna scolopes light organ symbiosis
-
Ruby, E. G. 1996. Lessons from a cooperative, bacterial-animal association: the Vibrio fischeri-Euprymna scolopes light organ symbiosis. Annu. Rev. Microbiol. 50:591-624.
-
(1996)
Annu. Rev. Microbiol
, vol.50
, pp. 591-624
-
-
Ruby, E.G.1
-
65
-
-
0017394123
-
Pyruvate production and excretion by the luminous marine bacteria
-
Ruby, E. G., and K. H. Nealson. 1977. Pyruvate production and excretion by the luminous marine bacteria. Appl. Environ. Microbiol. 34:164-169.
-
(1977)
Appl. Environ. Microbiol
, vol.34
, pp. 164-169
-
-
Ruby, E.G.1
Nealson, K.H.2
-
66
-
-
20044369348
-
Complete genome sequence of Vibrio fischeri: A symbiotic bacterium with pathogenic congeners
-
Ruby, E. G., M. Urbanowski, J. Campbell, A. Dunn, M. Faini, R. Gunsalus, P. Lostroh, C. Lupp, J. McCann, D. Millikan, A. Schaefer, E. Stabb, A. Stevens, K. Visick, C. Whistler, and E. P. Greenberg. 2005. Complete genome sequence of Vibrio fischeri: a symbiotic bacterium with pathogenic congeners. Proc. Natl. Acad. Sci. USA 102:3004-3009.
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 3004-3009
-
-
Ruby, E.G.1
Urbanowski, M.2
Campbell, J.3
Dunn, A.4
Faini, M.5
Gunsalus, R.6
Lostroh, P.7
Lupp, C.8
McCann, J.9
Millikan, D.10
Schaefer, A.11
Stabb, E.12
Stevens, A.13
Visick, K.14
Whistler, C.15
Greenberg, E.P.16
-
67
-
-
0004136246
-
-
2nd ed. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY
-
Sambrook, J., E. F. Fritsch, and T. Maniatis. 1989. Molecular cloning: a laboratory manual, 2nd ed. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY.
-
(1989)
Molecular cloning: A laboratory manual
-
-
Sambrook, J.1
Fritsch, E.F.2
Maniatis, T.3
-
68
-
-
0035878724
-
Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements
-
Schaffer, A. A., L. Aravind, T. L. Madden, S. Shavirin, J. L. Spouge, Y. I. Wolf, E. V. Koonin, and S. F. Altschul. 2001. Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements. Nucleic Acids Res. 29:2994-3005.
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 2994-3005
-
-
Schaffer, A.A.1
Aravind, L.2
Madden, T.L.3
Shavirin, S.4
Spouge, J.L.5
Wolf, Y.I.6
Koonin, E.V.7
Altschul, S.F.8
-
69
-
-
0029670970
-
Signal sensing by sigma 54-dependent regulators: Derepression as a control mechanism
-
Shingler, V. 1996. Signal sensing by sigma 54-dependent regulators: derepression as a control mechanism. Mol. Microbiol. 19:409-416.
-
(1996)
Mol. Microbiol
, vol.19
, pp. 409-416
-
-
Shingler, V.1
-
70
-
-
0027959266
-
The torR gene of Escherichia coli encodes a response regulator protein involved in the expression of the trimethylamine N-oxide reductase genes
-
Simon, G., V. Mejean, C. Jourlin, M. Chippaux, and M. C. Pascal. 1994. The torR gene of Escherichia coli encodes a response regulator protein involved in the expression of the trimethylamine N-oxide reductase genes. J. Bacteriol. 176:5601-5606.
-
(1994)
J. Bacteriol
, vol.176
, pp. 5601-5606
-
-
Simon, G.1
Mejean, V.2
Jourlin, C.3
Chippaux, M.4
Pascal, M.C.5
-
71
-
-
0142183479
-
Investigation of the role of electrostatic charge in activation of the Escherichia coli response regulator CheY
-
Smith, J. G., J. A. Latiolais, G. P. Guanga, S. Citineni, R. E. Silversmith, and R. B. Bourret. 2003. Investigation of the role of electrostatic charge in activation of the Escherichia coli response regulator CheY. J. Bacteriol. 185:6385-6391.
-
(2003)
J. Bacteriol
, vol.185
, pp. 6385-6391
-
-
Smith, J.G.1
Latiolais, J.A.2
Guanga, G.P.3
Citineni, S.4
Silversmith, R.E.5
Bourret, R.B.6
-
72
-
-
1942539256
-
Correlation between osmolarity and luminescence of symbiotic Vibrio fischeri strain ES114
-
Stabb, E. V., M. S. Butler, and D. M. Adin. 2004. Correlation between osmolarity and luminescence of symbiotic Vibrio fischeri strain ES114. J. Bacteriol. 186:2906-2908.
-
(2004)
J. Bacteriol
, vol.186
, pp. 2906-2908
-
-
Stabb, E.V.1
Butler, M.S.2
Adin, D.M.3
-
74
-
-
0036438796
-
RP4-based plasmids for conjugation between Escherichia coli and members of the Vibrionaceae
-
Stabb, E. V., and E. G. Ruby. 2002. RP4-based plasmids for conjugation between Escherichia coli and members of the Vibrionaceae. Methods Enzymol. 358:413-426.
-
(2002)
Methods Enzymol
, vol.358
, pp. 413-426
-
-
Stabb, E.V.1
Ruby, E.G.2
-
76
-
-
0032964297
-
BLAST 2 Sequences, a new tool for comparing protein and nucleotide sequences
-
Tatusova, T. A., and T. L. Madden. 1999. BLAST 2 Sequences, a new tool for comparing protein and nucleotide sequences. FEMS Microbiol. Lett. 174:247-250.
-
(1999)
FEMS Microbiol. Lett
, vol.174
, pp. 247-250
-
-
Tatusova, T.A.1
Madden, T.L.2
-
77
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson, J. D., D. G. Higgins, and T. J. Gibson. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:4673-4680.
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
78
-
-
0033952304
-
A genomic analysis of two-component signal transduction in Streptococcus pneumoniae
-
Throup, J. P., K. K. Koretke, A. P. Bryant, K. A. Ingraham, A. F. Chalker, Y. Ge, A. Marra, N. G. Wallis, J. R. Brown, D. J. Holmes, M. Rosenberg, and M. K. Burnham. 2000. A genomic analysis of two-component signal transduction in Streptococcus pneumoniae. Mol. Microbiol. 35:566-576.
-
(2000)
Mol. Microbiol
, vol.35
, pp. 566-576
-
-
Throup, J.P.1
Koretke, K.K.2
Bryant, A.P.3
Ingraham, K.A.4
Chalker, A.F.5
Ge, Y.6
Marra, A.7
Wallis, N.G.8
Brown, J.R.9
Holmes, D.J.10
Rosenberg, M.11
Burnham, M.K.12
-
79
-
-
0033907236
-
Vibrio fischeri lux genes play an important role in colonization and development of the host light organ
-
Visick, K. L., J. Foster, J. Doino, M. McFall-Ngai, and E. G. Ruby. 2000. Vibrio fischeri lux genes play an important role in colonization and development of the host light organ. J. Bacteriol. 182:4578-4586.
-
(2000)
J. Bacteriol
, vol.182
, pp. 4578-4586
-
-
Visick, K.L.1
Foster, J.2
Doino, J.3
McFall-Ngai, M.4
Ruby, E.G.5
-
80
-
-
0035151830
-
A two-component sensor required for normal symbiotic colonization of Euprymna scolopes by Vibrio fischeri
-
Visick, K. L., and L. M. Skoufos. 2001. A two-component sensor required for normal symbiotic colonization of Euprymna scolopes by Vibrio fischeri. J. Bacteriol. 183:835-842.
-
(2001)
J. Bacteriol
, vol.183
, pp. 835-842
-
-
Visick, K.L.1
Skoufos, L.M.2
-
81
-
-
0026070143
-
The phosphorylated form of the enhancer-binding protein NTRC has an ATPase activity that is essential for activation of transcription
-
Weiss, D. S., J. Batut, K. E. Klose, J. Keener, and S. Kustu. 1991. The phosphorylated form of the enhancer-binding protein NTRC has an ATPase activity that is essential for activation of transcription. Cell 67:155-167.
-
(1991)
Cell
, vol.67
, pp. 155-167
-
-
Weiss, D.S.1
Batut, J.2
Klose, K.E.3
Keener, J.4
Kustu, S.5
-
82
-
-
0035369115
-
Histidine kinases and response regulator proteins in two-component signaling systems
-
West, A. H., and A. M. Stock. 2001. Histidine kinases and response regulator proteins in two-component signaling systems. Trends Biochem. Sci. 26:369-376.
-
(2001)
Trends Biochem. Sci
, vol.26
, pp. 369-376
-
-
West, A.H.1
Stock, A.M.2
-
83
-
-
0023812828
-
Role of uhp genes in expression of the Escherichia coli sugar-phosphate transport system
-
Weston, L. A., and R. J. Kadner. 1988. Role of uhp genes in expression of the Escherichia coli sugar-phosphate transport system. J. Bacteriol. 170:3375-3383.
-
(1988)
J. Bacteriol
, vol.170
, pp. 3375-3383
-
-
Weston, L.A.1
Kadner, R.J.2
-
84
-
-
33846920606
-
The GacA global regulator of Vibrio fischeri is required for normal host tissue responses that limit subsequent bacterial colonization
-
Whistler, C. A., T. A. Koropatnick, A. Pollack, M. J. McFall-Ngai, and E. G. Ruby. 2007. The GacA global regulator of Vibrio fischeri is required for normal host tissue responses that limit subsequent bacterial colonization. Cell. Microbiol. 9:766-778.
-
(2007)
Cell. Microbiol
, vol.9
, pp. 766-778
-
-
Whistler, C.A.1
Koropatnick, T.A.2
Pollack, A.3
McFall-Ngai, M.J.4
Ruby, E.G.5
-
85
-
-
0345097572
-
GacA regulates symbiotic colonization traits of Vibrio fischeri and facilitates a beneficial association with an animal host
-
Whistler, C. A., and E. G. Ruby. 2003. GacA regulates symbiotic colonization traits of Vibrio fischeri and facilitates a beneficial association with an animal host. J. Bacteriol. 185:7202-7212.
-
(2003)
J. Bacteriol
, vol.185
, pp. 7202-7212
-
-
Whistler, C.A.1
Ruby, E.G.2
-
86
-
-
0007809063
-
Migration of bacteria in semisolid agar
-
Wolfe, A. J., and H. C. Berg. 1989. Migration of bacteria in semisolid agar. Proc. Natl. Acad. Sci. USA 86:6973-6977.
-
(1989)
Proc. Natl. Acad. Sci. USA
, vol.86
, pp. 6973-6977
-
-
Wolfe, A.J.1
Berg, H.C.2
-
87
-
-
0020353491
-
Osmoregulation of gene expression. I. DNA sequence of the ompR gene of the ompB operon of Escherichia coli and characterization of its gene product
-
Wurtzel, E. T., M. Y. Chou, and M. Inouye. 1982. Osmoregulation of gene expression. I. DNA sequence of the ompR gene of the ompB operon of Escherichia coli and characterization of its gene product. J. Biol. Chem. 257:13685-13691.
-
(1982)
J. Biol. Chem
, vol.257
, pp. 13685-13691
-
-
Wurtzel, E.T.1
Chou, M.Y.2
Inouye, M.3
-
88
-
-
12544258487
-
Functional characterization in vitro of all two-component signal transduction systems from Escherichia coli
-
Yamamoto, K., K. Hirao, T. Oshima, H. Aiba, R. Utsumi, and A. Ishihama. 2005. Functional characterization in vitro of all two-component signal transduction systems from Escherichia coli. J. Biol. Chem. 280:1448-1456.
-
(2005)
J. Biol. Chem
, vol.280
, pp. 1448-1456
-
-
Yamamoto, K.1
Hirao, K.2
Oshima, T.3
Aiba, H.4
Utsumi, R.5
Ishihama, A.6
-
90
-
-
33751370976
-
The symbiosis regulator RscS controls the syp gene locus, biofilm formation and symbiotic aggregation by Vibrio fischeri
-
Yip, E. S., K. Geszvain, C. R. Deloney-Marino, and K. L. Visick. 2006. The symbiosis regulator RscS controls the syp gene locus, biofilm formation and symbiotic aggregation by Vibrio fischeri. Mol. Microbiol. 62:1586-1600.
-
(2006)
Mol. Microbiol
, vol.62
, pp. 1586-1600
-
-
Yip, E.S.1
Geszvain, K.2
Deloney-Marino, C.R.3
Visick, K.L.4
|