Dynamic flux cartography of hairy roots primary metabolism

Phytochemistry

Volumn 68, Issue 16-18, 2007, Pages 2393-2404

  Cloutier, M ^a   Perrier, M ^a   Jolicoeur, M ^a  

^a ÉCOLE POLYTECHNIQUE DE MONTRÉAL   (Canada)

Author keywords

Hairy roots; Kinetic model; Metabolic modelling; Metabolic regulation

Indexed keywords

CARBON; NITROGEN; PHOSPHATE;

ARTICLE; BIOLOGICAL MODEL; CATHARANTHUS; COMPUTER SIMULATION; ENERGY METABOLISM; EVALUATION; KINETICS; METABOLISM; PLANT ROOT;

CARBON; CATHARANTHUS; COMPUTER SIMULATION; ENERGY METABOLISM; KINETICS; MODELS, BIOLOGICAL; NITROGEN; PHOSPHATES; PLANT ROOTS;

BACTERIA (MICROORGANISMS); CATHARANTHUS ROSEUS;

EID: 34547759811     PISSN: 00319422     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.phytochem.2007.04.028     Document Type: Article

References (23)

1. Affourtit C., Krab K., and Moore A.L. Control of plant mitochondrial respiration. Biochimica et Biophysica Acta (BBA) - Bioenergetics 1504 (2001) 58-69
2. 14C]glucose. Plant Physiology 138 (2005) 2220-2232
3. Boatright J., Negre F., Chen X., Kish C.M., Wood B., Peel G., Orlova I., Gang D., Rhodes D., and Dudareva N. Understanding in vivo benzenoid metabolism in petunia petal tissue. Plant Physiology 135 (2004) 1993-2011
4. Chassagnole C., Noisommit-Rizzi N., Schmid J.W., Mauch K., and Reuss M. Dynamic modeling of the central carbon metabolism of Escherichia coli. Biotechnology and Bioengineering 79 (2002) 53-73
5. Delmer D.P., and Haigler C.H. The Regulation of Metabolic Flux to Cellulose, a Major Sink for Carbon in Plants. Metabolic Engineering 4 (2002) 22-28
6. 14C-labeled glucose. The Journal of Biological Chemistry 270 (1995) 13147-13159
7. Farquhar G.D., von Caemmerer S., and Berry J.A. Models of Photosynthesis. Plant Physiology 125 (2001) 42-45
8. 2 fixation as an example for general control mechanisms in metabolic cycles. Biosystems 51 (1999) 79-93
9. Henry O., Perrier M., and Kamen A. Metabolic flux analysis of HEK-293 cells in perfusion cultures for the production of adenoviral vectors. Metabolic Engineering 7 (2005) 467-476
10. Lamboursain L., and Jolicoeur M. Critical influence of Eschscholzia californica cells nutritional state on secondary metabolite production. Biotechnology and Bioengineering 91 (2005) 827-837
11. Leduc M., Tikhomiroff C., Cloutier M., Perrier M., and Jolicoeur M. Development of a kinetic metabolic model: application to Catharanthus roseus hairy root. Bioprocess and Biosystems Engineering 28 (2006) 295-313
12. Lin J., Takagi M., Qu Y., Gao P., and Yoshida T. Metabolic flux change in hybridoma cells under high osmotic pressure. Journal of Bioscience and Bioengineering 87 (1999) 255-257
13. Plaxton W.C. Metabolic aspects of phosphate starvation in plants. In: Lynch J.P., and Deikman J. (Eds). Phosphorus in Plant Biology: Regulatory Roles in Molecular, Cellular, Organismic, and Ecosystem Processes (1998), American Society of Plant Physiologists 229-241
14. Poolman M.G., Fell D.A., and Thomas S. Modelling photosynthesis and its control. Journal of Experimental Botany 51 (2000) 319-328
15. Ramli U.S., Baker D.S., Quant P.A., and Harwood J.L. Control analysis of lipid biosynthesis in tissue cultures from oil crops shows that flux control is shared between fatty acid synthesis and lipid assembly. Biochemical Journal 364 (2002) 393-401
16. Rizzi M., Baltes M., Theobald U., and Reuss M. In vivo analysis of metabolic dynamics in Saccharomyces cerevisiae: II. Mathematical model. Biotechnology and Bioengineering 55 (1997) 592-608
17. Roessner U., Wagner C., Kopka J., Trethewey R.N., and Willmitzer L. Simultaneous analysis of metabolites in potato tuber by gas chromatography-mass spectrometry. Plant Journal 23 (2000) 131-142
18. Rontein D., Dieuaide-Noubhani M., Dufourc E.J., Raymond P., and Rolin D. The metabolic architecture of plant cells: stability of central metabolism and flexibility of anabolic pathways during the growth cycle of tomato cells. Journal of Biological Chemistry 277 (2002) 43948-43960
19. Roscher A., Kruger N.J., and Ratcliffe R.G. Strategies for metabolic flux analysis in plants using isotope labelling. Journal of Biotechnology 77 (2000) 81-102
20. Ruan Y., Gilmore J., and Conner T. Towards Arabidopsis genome analysis: monitoring expression profiles of 1400 genes using cDNA microarrays. Plant Journal 15 (1998) 821-833
21. Thomas S., Mooney P.J., Burrell M.M., and Fell D.A. Metabolic Control Analysis of glycolysis in tuber tissue of potato (Solanum tuberosum): explanation for the low control coefficient of phosphofructokinase over respiratory flux. Biochemical Journal 322 (1997) 119-127
22. Varner J., and Ramkrishna D. Mathematical models of metabolic pathways. Current Opinion in Biotechnology 10 (1999) 146-150
23. Wong H.-K., Chan H.-K., Coruzzi G.M., and Lam H.-M. Correlation of ASN2 gene expression with ammonium metabolism in Arabidopsis. Plant Physiology 134 (2004) 332-338