Coarse-grained modelling of pressure-related effects in staphylococcal nuclease and ubiquitin

Journal of Physics Condensed Matter

Volumn 19, Issue 28, 2007, Pages

  Wojciechowski, Michal ^a   Cieplak, Marek ^a  

^a INSTITUTE OF PHYSICS   (Poland)

Author keywords

[No Author keywords available]

Indexed keywords

CONFORMATIONS; HIGH TEMPERATURE EFFECTS; HYDROSTATIC PRESSURE; MATHEMATICAL MODELS; PRESSURE EFFECTS; PROTEIN FOLDING;

COARSE-GRAINED MODELS; STAPHYLOCOCCAL NUCLEASE; UBIQUITIN;

ENZYMES;

EID: 34547702376     PISSN: 09538984     EISSN: 1361648X     Source Type: Journal    
DOI: 10.1088/0953-8984/19/28/285218     Document Type: Article

References (41)

1. Li T M, Hook J W III, Drickamer H G and Weber G 1976 Biochemistry 15 3205
2. Weber G and Drickamer H G 1983 Q. Rev. Biophys. 16 89
3. Markley J L, Northrop D B and Royer C A (ed) 1996 High Pressure Effects in Molecular Biophysics and Enzymology (Oxford: Oxford University Press)
4. Jonas J 2002 Biochim. Biophys. Acta 1595 145
5. Doster W and Gebhardt R 2003 Chem. Phys. 292 383
6. Smeller L 2002 Biochim. Biophys. Acta 1595 11
7. Bridgeman P 1914 J. Biol. Chem. 19 511
8. Mozhaev V, Heremans K, Frank J, Masson P and Balny C 1996 Proteins 24 81
9. Silva J and Weber G 1993 Annu. Rev. Phys. Chem. 44 89
10. Tan C, Xu C and Ruan K 2006 Biochim. Biophys. Acta 1764 481
11. Desai G, Panick G, Zein M, Winter R and Royer C 1999 J. Mol. Biol. 288 461
12. Royer C, Hinck A, Loh S, Prehoda K, Peng X, Jonas J and Markley J 1993 Biochemistry 32 5222
13. Vidugiris G J A, Markley J L and Royer C A 1995 Biochemistry 34 4909
14. Panick G, Vidugiris G, Malessa R, Rapp G, Winter R and Royer C 1999 Biochemistry 38 4157
15. Brun L, Isom D, Velu P, Garcia-Moreno B and Royer C 2006 Biochemistry 45 3473
16. Go N and Abe H 1981 Biopolymers 20 991
17. Panick G, Malessa R, Winter R, Rapp G, Frye K J and Royer C A 1998 J. Mol. Biol. 275 389
18. Paliwal A, Asthagiri D, Bossev D P and Paulaitis M E 2004 Biophys. J. 87 3479
19. Miller W G and Goebel C V 1968 Biochemistry 7 3925
20. Kitahara R, Yokoyama S and Akasaka K 2005 J. Mol. Biol. 347 277
21. Herberhold H and Winter R 2002 Biochemistry 41 2396
22. Royer C A 2002 Biochim. Biophys. Acta 1595 201
23. Ghosh T, Garcia A E and Garde S 2002 J. Chem. Phys. 116 2480
24. Ghosh T, Garcia A E and Garde S 2001 J. Am. Chem. Soc. 123 10997
25. Ghosh T, Garcia A E and Garde S 2003 J. Phys. Chem. B 107 612
26. Onuchic J N, Nymeyer H, Garcia A E, Chahine J and Socci N D 2000 Adv. Protein Chem. 53 87
27. Hummer G, Garde S, Garcia A, Paulatis M and Pratt L 1998 Proc. Natl Acad. Sci. USA 95 1552
28. Hillson N, Onuchic J N and Garcia A E 1999 Proc. Natl Acad. Sci. USA 96 14848
29. Cheung M S, Garcia A E and Onuchic J N 2002 Proc. Natl Acad. Sci. USA 99 685
30. Wagner G 1980 FEBS Lett. 112 280
31. Cieplak M and Hoang T X 2003 Biophys. J. 84 475
32. Cieplak M, Hoang T X and Robbins M O 2004 Proteins Struct. Funct. Biol. 56 285
33. Baker D 2000 Nature 405 39
34. Micheletti C, Banavar J R and Maritan A 2001 Phys. Rev. Lett. 87 088102
35. Tsai J, Taylor R, Chothia C and Gerstein M 1999 J. Mol. Biol. 290 253
36. Veitshans T, Klimov D and Thirumalai D 1997 Folding Des. 2 1
37. Szymczak P and Cieplak M 2006 J. Chem. Phys. 125 164903
38. Kwiecinska J I and Cieplak M 2005 J. Phys.: Condens. Matter 17 S1565
39. Cieplak M and Sulkowska J I 2005 J. Chem. Phys. 123 194908
40. Humphrey W, Dalke A and Schulten K 1996 J. Mol. Graph 14 33
41. Zemla A 2003 Nucleic Acids Res. 31 3370