Reprint of "The effect of biogeochemical processes on pH"

Marine Chemistry

Volumn 106, Issue 1-2 SPEC. ISS., 2007, Pages 380-401

  Soetaert, Karline ^a   Hofmann, Andreas F ^a   Middelburg, Jack J ^a   Meysman, Filip J R ^a   Greenwood, Jim ^a,b  

^a NETHERLANDS INSTITUTE OF ECOLOGY NIOO KNAW   (Netherlands)

^b CSIRO   (Australia)

Author keywords

Biochemistry; Buffer intensity; Calcification; pH; Sediment; Water column

Indexed keywords

ALKALINITY; BIOGEOCHEMISTRY; BUFFERING; CALCIFICATION; OXIDATION; PH; PRECIPITATION (CHEMISTRY);

EID: 34547700730     PISSN: 03044203     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.marchem.2007.06.008     Document Type: Article

References (57)

1. Aller R.C. Bioturbation and manganese cycling in hemipelagic sediments. Philos. Trans. R. Soc. Lond., A 331 (1990) 51-68
2. 2 microelectrode results. Goechim. Cosmochim. Acta 53 (1989) 2831-2845
3. Ben-Yaakov S. pH buffering of pore waters of recent anoxic marine sediments. Limnol. Oceanogr. 18 (1973) 86-94
4. Boudreau B.P., and Canfield D.E. A comparison between closed- and open-system models for porewater pH and calcite-saturation state. Geochim. Cosmochim. Acta 57 (1993) 317-334
5. Boudreau B.P. A method-of-lines code for carbon and nutrient diagenesis in aquatic sediments. Comput. Geosci. 22 (1996) 479-496
6. Brewer P.G., and Goldman J.V. Alkalinity changes generated by phytoplankton growth. Limnol. Oceanog. 21 (1976) 108-117
7. Broecker W.S., and Peng T.H. Tracers in the Sea (1982), Eldigio Press, Palisades, New York 690pp.
8. Bronshteyn V.K., and Chernov A.A. Freezing potentials arising on solidification of dilute aqueous solutions of electrolytes. J. Cryst. Growth 112 (1991) 129-145
9. Buitenhuis E.T., van der Wal P., and De Baar H.J.W. Blooms of Emiliana huxleyi are sinks of atmospheric carbon dioxide: a field and mesocosm study derived simulation. Glob. Biogeochem. Cylces 15 (2001) 577-587
10. Cai W.-J., and Wang Y. The chemistry, fluxes and sources of carbon dioxide in the estuarine waters of the Satilla and Altamaha Rivers, Georgia. Limnol. Oceanogr. 43 (1998) 657-668
11. Cai W.-J., Wang Y., and Hodson R. Acid-base properties of dissolved organic matter in the estuarine waters of Georgia, USA. Geochim. Cosmochim. Acta 62 (1998) 473-483
12. Coleman M.L., and Raiswell R. Source of carbonate and origin of zonation in pyretiferous carbonate concretions - evaluation of a dynamic model. Am. J. Sci. 295 (1995) 282-308
13. Copin Montégut C., and Copin Montégut G. Theoretical considerations about the reactions of calcification in sea water. Mar. Chem. 63 (1999) 213-224
14. - and respiration of free CO2. Limnol. Oceanogr. 42 (1997) 365-372
15. Dickson A.G. An exact definition of total alkalinity and a procedure for the estimation of alkalinity and total inorganic carbon from titration data. Deep-Sea Res. 28A (1981) 609-623
16. Ferris F.G., Hallbeck L., Kennedy C.B., and Pedersen K. Geochemistry of acidic Rio Tinto headwaters and role of bacteria in solid phase metal partitioning. Chem. Geol. 212 (2004) 291-300
17. Follows M.J., Williams R.G., and Marshall J.C. The solubility pump of carbon in the subtropical gyre of the North Atlantic. J. Mar. Res. 54 (1996) 605-630
18. 2 system in seawater. J. Mar. Syst. 5 (1994) 111-118
19. 2. Limnol. Oceanogr. 39 (1994) 458-462
20. Froelich P.N., Klinkhammer G.P., Bender M.L., Luedtke N.A., Heath G.R., Cullen D., and Dauphin P. Early oxidation of organic matter in pelagic sediments of the eastern equatorial Atlantic: suboxic diagenesis. Geochim. Cosmochim. Acta 43 (1979) 1075-1090
21. 2 source-sink debate. Proc. Natl. Acad. Sci. U. S. A. 96 (1999) 13017-13022
22. Gleitz M., Rutgers van der Loeff M.M., Thomas D.N., Dieckmann G.S., and Millero F.J. Comparison of summer and winter inorganic carbon, oxygen and nutrient concentrations in Antarctic sea ice brine. Mar. Chem. 51 (1995) 81-91
23. Hunter K.S., Wang Y., and van Cappellen P. Kinetic modeling of microbially-driven redox chemistry of subsurface environments: coupling transport, microbial metabolism and geochemistry. J. Hydrol. 209 (1998) 53-80
24. Jeppesen E., Sondergaard M., Jensen J.P., Mortensen E., Hansen A.M., and Jorgensen T. Cascading trophic interactions from fish to bacteria and nutrients after reduced sewage loading: an 18-year study of a shallow hypertrophic lake. Ecosystems 1 (1998) 250-267
25. de Lange G.J., Middelburg J.J., Van der Weijden C.H., Catalano G., Luther G.W., Hydes D.J., Woittiez J.R.W., and Klinkhammer G.P. Composition of anoxic hypersaline brines in the Tyro and Bannock Basins, eastern Mediterranean. Mar. Chem. 31 (1990) 63-88
26. 2 system calculations. ORNL/CDIA-105. Carbon dioxide information analysis center, Tennessee, USA (1998)
27. Luff R., Haeckel M., and Wallmann K. Robust and fast FORTRAN and MATLAB libraries to calculate pH distributions in marine sediments. Comput. Geosci. 27 (2001) 157-169
28. Meysman F.J.R., Middelburg J.J., Herman P.M.J., and Heip C.H.R. Reactive transport in surface sediments. II. Media: an object-oriented problem-solving environment for early diagenesis. Comput. Geosci. 29 3 (2003) 301-318
29. Middelburg J.J., de Lange G.J., and Kreulen R. Dolomite formation in anoxic sediments of Kau Bay, Indonesia. Geology 18 (1990) 399-402
30. Millero F.J. Thermodynamics of the carbon dioxide system in the oceans. Geochim. Cosmochim. Acta 59 (1995) 661-677
31. Millero F.J., Degler E.A., O'Sullivan D.W., Goyet C., and Eischeid G. The carbon dioxide system in the Arabian Sea. Deep-Sea Res. II 45 (1998) 2225-2252
32. Morris A.W., and Riley J.P. The bromide/chlorinity and sulphate/chlorinity ratio in seawater. Deep-Sea Res. 13 (1966) 699-706
33. 2 system: an evaluation of ten methods of investigation. Limnol. Oceanogr. 14 (1969) 179-186
34. Press W.H., Teukolsky S.A., Vetterling W.T., and Flannery B.P. Numerical recipes in FORTRAN 77: the art of scientific computing. 3rd ed (1997), Cambridge University Press, Cambridge
35. Raiswell R., and Fisher Q.J. Rates of carbonate cementation associated with sulphate reduction in DSDP/ODP sediments: implications for the formation of concretions. Chem. Geol. 211 (2004) 71-85
36. Reimers C.E., Rutgenberg K.C., Canfield D.E., Christiansen M.B., and Martin J.B. Pore water pH and authigenic phases formed in the uppermost sediments of the Santa Barbara Basin. Geochim. Cosmochim. Acta 60 (1996) 4037-4057
37. 2S and pH profiles of a microbial mat. Limnol. Oceanogr. 28 (1983) 1062-1074
38. Riley J.P. The occurrence of anomalously high fluoride concentrations in the North Atlantic. Deep-Sea Res. 12 (1965) 219-220
39. Riley J.P., and Skirrow G. Chemical oceanography. 2nd ed. Vol 2 (1975), Academic Press, London
40. Ritger S., Carson B., and Suess E. Methane-derived authigenic carbonates formed by subduction-induced porewater expulsion along the Oregon/Washington margin. Geol. Soc. Amer. Bull. 98 (1987) 147-156
41. 2S. Geochim. Cosmochim. Acta 52 (1988) 649-654
42. Sikes C.S., Roer R.D., and Wilbur K.M. Photosynthesis and coccolith formation: inorganic carbon sources and net inorganic reaction of deposition. Limnol. Oceanogr. 25 (1980) 248-261
43. Smith S.V., and Key G.S. Carbon dioxide and metabolism in marine environments. Limnol. Oceanogr. 20 (1975) 493-495
44. Soetaert K., deClippele V., and Herman P. Femme, a flexible environment for mathematically modelling the environment. Ecol. Modell. 151 (2002) 177-193
45. Soetaert K., Herman P.M.J., and Middelburg J. A model of early diagenetic processes from the shelf to abyssal depths. Geochim. Cosmochim. Acta 60 (1996) 1019-1040
46. Stumm W., and Morgan J.J. Aquatic Chemistry. 2nd Ed. (1981), John Wiley and sons, New York 780
47. Sundquist E.T., and Plummer L.N. Carbon dioxide in the ocean surface: the homogeneous buffer factor. Science 204 (1979) 1203-1205
48. Taylor A.H., Watson A.J., and Robertson J.E. The influence of the spring phytoplankton bloom on carbon dioxide and oxygen concentrations in the surface waters of the northeast Atlantic during 1989. Deep-Sea Res. 39 (1992) 137-152
49. Valentine D.L. Biogeochemistry and microbial ecology of methane oxidation in anoxic environments: a review. Antonie van Leeuwenhoek 81 (2002) 271-282
50. Van Cappellen P., and Wang Y. Cycling of iron and manganese in surface sediments: a general theory for the coupled transport and reaction of carbon, oxygen, nitrogen, sulfur, iron and manganese. Am. J. Sci. 296 (1996) 197-243
51. Wallmann K., Linke P., Suess E., Bohrmann G., Sahling H., Schluter M., Dahlmann A., Lammers S., Greinert J., and von Mirbach N. Quantifying fluid flow, solute mixing and biogeochemical turnover at cold vents of the eastern Aleutian subduction zone. Geochim. Cosmochim. Acta 61 (1997) 5209-5219
52. 2?. Coral Reefs 11 (1991) 127-130
53. 2. Geochim. Cosmochim. Acta 65 (2001) 2677-2690
54. Wolf-Gladrow D., and Riebesell U. Diffusion and reactions in the vicinity of plankton: a refined model for inorganic carbon transport. Mar. Chem. 59 (1997) 17-34
55. Wollast R., Garrels R.M., and MacKenzie F.T. Calcite-seawater reactions in ocean surface waters. Am. J. Sci. 280 (1980) 831-848
56. Zhang J.-Z. The use of pH and buffer intensity to quantify the carbon cycle in the ocean. Mar. Chem. 70 (2000) 121-131
57. 2 in Seawater: Equilibrium, Kinetics, Isotopes. Elsevier oceanography Series vol. 65 (2001), Elsevier, Amsterdam 346 pp.