Distinct gene expression profiles in peripheral blood mononuclear cells from patients infected with vaccinia virus, yellow fever 17D virus, or upper respiratory infections

Vaccine

Volumn 25, Issue 35, 2007, Pages 6458-6473

  Scherer, Christina A ^a   Magness, Charles L ^a   Steiger, Kathryn V ^a   Poitinger, Nicholas D ^a   Caputo, Christine M ^a   Miner, Douglas G ^a   Winokur, Patricia L ^b   Klinzman, Donna ^b   McKee, Janice ^c   Pilar, Christine ^d   Ward, Patricia A ^d   Gillham, Martha H ^d   Haulman, N Jean ^c   Stapleton, Jack T ^b   Iadonato, Shawn P ^a  

^a Illumigen Biosciences Inc   (United States)

^b UNIVERSITY OF IOWA   (United States)

^c UNIVERSITY OF WASHINGTON   (United States)

^d Madrona Medical Group   (United States)

Author keywords

Gene regulation; Vaccination; Viral infections

Indexed keywords

SMALLPOX VACCINE; UNCLASSIFIED DRUG; WETVAX; YELLOW FEVER VACCINE;

ADULT; ANTIGEN PRESENTATION; ARTICLE; CELL HETEROGENEITY; CLINICAL TRIAL; FEMALE; GENE EXPRESSION PROFILING; HUMAN; IMMUNE RESPONSE; MALE; MONOCYTE; MONONUCLEAR CELL; NORMAL HUMAN; POPULATION RESEARCH; PRIORITY JOURNAL; PROTEIN DEGRADATION; T LYMPHOCYTE; UPPER RESPIRATORY TRACT INFECTION; UPREGULATION; VACCINIA VIRUS; VIRUS INFECTION; YELLOW FEVER FLAVIVIRUS;

ADOLESCENT; ADULT; DATA INTERPRETATION, STATISTICAL; DNA, COMPLEMENTARY; FEMALE; GENE EXPRESSION PROFILING; HUMANS; MALE; MONOCYTES; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; REGRESSION ANALYSIS; RESPIRATORY TRACT INFECTIONS; RNA, VIRAL; SMALLPOX VACCINE; VACCINATION; VACCINIA; VACCINIA VIRUS; VIRAL VACCINES; YELLOW FEVER; YELLOW FEVER VACCINE; YELLOW FEVER VIRUS;

EID: 34547667125     PISSN: 0264410X     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.vaccine.2007.06.035     Document Type: Article

References (41)

1. Bolt G., Berg K., and Blixenkrone-Moller M. Measles virus-induced modulation of host-cell gene expression. J Gen Virol 83 Pt 5 (2002) 1157-1165
2. Campbell C.J., and Ghazal P. Molecular signatures for diagnosis of infection: application of microarray technology. J Appl Microbiol 96 1 (2004) 18-23
3. Brum L.M., Lopez M.C., Varela J.C., Baker H.V., and Moyer R.W. Microarray analysis of A549 cells infected with rabbitpox virus (RPV): a comparison of wild-type RPV and RPV deleted for the host range gene, SPI-1. Virology 315 2 (2003) 322-334
4. Detweiler C.S., Cunanan D.B., and Falkow S. Host microarray analysis reveals a role for the Salmonella response regulator phoP in human macrophage cell death. Proc Natl Acad Sci USA 98 10 (2001) 5850-5855
5. Geiss G.K., Bumgarner R.E., An M.C., Agy M.B., van 't Wout A.B., Hammersmark E., et al. Large-scale monitoring of host cell gene expression during HIV-1 infection using cDNA microarrays. Virology 266 1 (2000) 8-16
6. Guerra S., Lopez-Fernandez L.A., Pascual-Montano A., Munoz M., Harshman K., and Esteban M. Cellular gene expression survey of vaccinia virus infection of human HeLa cells. J Virol 77 11 (2003) 6493-6506
7. Jones J.O., and Arvin A.M. Microarray analysis of host cell gene transcription in response to varicella-zoster virus infection of human T cells and fibroblasts in vitro and SCIDhu skin xenografts in vivo. J Virol 77 2 (2003) 1268-1280
8. Kato-Maeda M., Gao Q., and Small P.M. Microarray analysis of pathogens and their interaction with hosts. Cell Microbiol 3 11 (2001) 713-719
9. Warke R.V., Xhaja K., Martin K.J., Fournier M.F., Shaw S.K., Brizuela N., et al. Dengue virus induces novel changes in gene expression of human umbilical vein endothelial cells. J Virol 77 21 (2003) 11822-11832
10. Kash J.C., Basler C.F., Garcia-Sastre A., Carter V., Billharz R., Swayne D.E., et al. Global host immune response: pathogenesis and transcriptional profiling of type A influenza viruses expressing the hemagglutinin and neuraminidase genes from the 1918 pandemic virus. J Virol 78 17 (2004) 9499-9511
11. Baas T., Baskin C.R., Diamond D.L., Garcia-Sastre A., Bielefeldt-Ohmann H., Tumpey T.M., et al. An integrated molecular signature of disease: analysis of influenza virus-infected macaques through functional genomics and proteomics. J Virol (2006)
12. Geiss G.K., Salvatore M., Tumpey T.M., Carter V.S., Wang X., Basler C.F., et al. Cellular transcriptional profiling in influenza A virus-infected lung epithelial cells: the role of the nonstructural NS1 protein in the evasion of the host innate defense and its potential contribution to pandemic influenza. Proc Natl Acad Sci USA 99 16 (2002) 10736-10741
13. Chun T.W., Justement J.S., Lempicki R.A., Yang J., Dennis Jr. G., Hallahan C.W., et al. Gene expression and viral prodution in latently infected, resting CD4+ T cells in viremic versus aviremic HIV-infected individuals. Proc Natl Acad Sci USA 100 4 (2003) 1908-1913
14. Guadalupe M., Sankaran S., George M.D., Reay E., Verhoeven D., Shacklett B.L., et al. Viral suppression and immune restoration in the gastrointestinal mucosa of human immunodeficiency virus type 1-infected patients initiating therapy during primary or chronic infection. J Virol 80 16 (2006) 8236-8247
15. Honda M., Kaneko S., Kawai H., Shirota Y., and Kobayashi K. Differential gene expression between chronic hepatitis B and C hepatic lesion. Gastroenterology 120 4 (2001) 955-966
16. Kawada J., Kimura H., Kamachi Y., Nishikawa K., Taniguchi M., Nagaoka K., et al. Analysis of gene-expression profiles by oligonucleotide microarray in children with influenza. J Gen Virol 87 Pt 6 (2006) 1677-1683
17. Sankaran S., Guadalupe M., Reay E., George M.D., Flamm J., Prindiville T., et al. Gut mucosal T cell responses and gene expression correlate with protection against disease in long-term HIV-1-infected nonprogressors. Proc Natl Acad Sci USA 102 28 (2005) 9860-9865
18. Smith M.W., Yue Z.N., Geiss G.K., Sadovnikova N.Y., Carter V.S., Boix L., et al. Identification of novel tumor markers in hepatitis C virus-associated hepatocellular carcinoma. Cancer Res 63 4 (2003) 859-864
19. Yu S.Y., Hu Y.W., Liu X.Y., Xiong W., Zhou Z.T., and Yuan Z.H. Gene expression profiles in peripheral blood mononuclear cells of SARS patients. World J Gastroenterol 11 32 (2005) 5037-5043
20. Talbot T.R., Stapleton J.T., Brady R.C., Winokur P.L., Bernstein D.I., Germanson T., et al. Vaccination success rate and reaction profile with diluted and undiluted smallpox vaccine: a randomized controlled trial. JAMA 292 10 (2004) 1205-1212
21. Theiler M., and Smith H.H. The use of yellow fever virus modified by in vitro cultivation for human immunization. J Exp Med 65 (1937) 787-800
22. Theiler M., and Smith H.H. The use of yellow fever virus modified by in vitro cultivation for human immunization. Rev Med Virol 10 1 (2000) 6-16 (discussion 13-15)
23. Mortimer P.P. Yellow fever vaccine. BMJ 324 7335 (2002) 439
24. Kerr M.K., and Churchill G.A. Statistical design and the analysis of gene expression microarray data. Genet Res 77 2 (2001) 123-128
25. Smyth G.K. Limma: linear models for microarray data. In: Gentleman R.C., Carey V., Dudoit S., Irizarry R., and Huber W. (Eds). Bioinformatics and computational biology solutions using R and bioconductor (2004), Springer, New York 397-420
26. Benjamini Y., Drai D., Elmer G., Kafkafi N., and Golani I. Controlling the false discovery rate in behavior genetics research. Behav Brain Res 125 1-2 (2001) 279-284
27. Smyth G.K. Linear models and empirical bayes methods for assessing differential expression in microarray experiments. Stat Appl Genet Mol Biol 3 1 (2004) (article 3)
28. Quackenbush J. Microarray data normalization and transformation. Nat Genet 32 Suppl. (2002) 496-501
29. Yang T.H., and Speed T.P. Design and analysis of comparative microarray experiments. In: Speed T.P. (Ed). Statistical analysis of gene expression microarray data (2003), Chapman & Hall/CRC Press, Boca Raton 35-91
30. Wheeler D.L., Barrett T., Benson D.A., Bryant S.H., Canese K., Chetvernin V., et al. Database resources of the National Center for Biotechnology Information. Nucleic Acids Res 34 Database issue (2006) D173-D180
31. Altschul S.F., Gish W., Miller W., Myers E.W., and Lipman D.J. Basic local alignment search tool. J Mol Biol 215 3 (1990) 403-410
32. Ashburner M., Ball C.A., Blake J.A., Botstein D., Butler H., Cherry J.M., et al. Gene ontology: tool for the unification of biology. The gene ontology consortium. Nat Genet 25 1 (2000) 25-29
33. Maglott D., Ostell J., Pruitt K.D., and Tatusova T. Entrez Gene: gene-centered information at NCBI. Nucleic Acids Res 33 Database issue (2005) D54-D58
34. Rock M.T., Yoder S.M., Talbot T.R., Edwards K.M., and Crowe Jr. J.E. Adverse events after smallpox immunizations are associated with alterations in systemic cytokine levels. J Infect Dis 189 8 (2004) 1401-1410
35. Cummings J.F., Polhemus M.E., Hawkes C., Klote M., Ludwig G.V., and Wortmann G. Lack of vaccinia viremia after smallpox vaccination. Clin Infect Dis 38 3 (2004) 456-458
36. Savona M.R., Dela Cruz W.P., Jones M.S., Thornton J.A., Xia D., Hadfield T.L., et al. Detection of vaccinia DNA in the blood following smallpox vaccination. JAMA 295 16 (2006) 1898-1900
37. Pfister M., Kursteiner O., Hilfiker H., Favre D., Durrer P., Ennaji A., et al. Immunogenicity and safety of BERNA-YF compared with two other 17D yellow fever vaccines in a phase 3 clinical trial. Am J Trop Med Hyg 72 3 (2005) 339-346
38. Reinhardt B., Jaspert R., Niedrig M., Kostner C., and L'Age-Stehr J. Development of viremia and humoral and cellular parameters of immune activation after vaccination with yellow fever virus strain 17D: a model of human flavivirus infection. J Med Virol 56 2 (1998) 159-167
39. Fredericksen B.L., and Gale Jr. M. West Nile virus evades activation of interferon regulatory factor 3 through RIG-I-dependent and -independent pathways without antagonizing host defense signaling. J Virol 80 6 (2006) 2913-2923
40. Scholle F., and Mason P.W. West Nile virus replication interferes with both poly(I:C)-induced interferon gene transcription and response to interferon treatment. Virology 342 1 (2005) 77-87
41. Rubins K.H., Hensley L.E., Jahrling P.B., Whitney A.R., Geisbert T.W., Huggins J.W., et al. The host response to smallpox: analysis of the gene expression program in peripheral blood cells in a nonhuman primate model. Proc Natl Acad Sci USA 101 42 (2004) 15190-15195