-
1
-
-
13444304332
-
The vertebrate genome annotation (Vega) database
-
Ashurst JL, Chen CK, Gilbert JG, Jekosch K, Keenan S, et al: The vertebrate genome annotation (Vega) database. Nucleic Acids Res 33:D459-D465 (2005).
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Ashurst, J.L.1
Chen, C.K.2
Gilbert, J.G.3
Jekosch, K.4
Keenan, S.5
-
2
-
-
3142532642
-
Alternative usage of 5′ exons in the chicken nerve growth factor gene: Refined characterization of a weakly expressed gene
-
Bertaux O, Toselli-Mollereau E, Auffray C, Devignes MD: Alternative usage of 5′ exons in the chicken nerve growth factor gene: refined characterization of a weakly expressed gene. Gene 334: 83-97 (2004).
-
(2004)
Gene
, vol.334
, pp. 83-97
-
-
Bertaux, O.1
Toselli-Mollereau, E.2
Auffray, C.3
Devignes, M.D.4
-
3
-
-
33644876924
-
-
Birney E, Andrews D, Caccamo M, Chen Y, Clarke L, et al: Ensembl 2006. Nucleic Acids Res 34:D556-D561 (2006)
-
(2006)
Ensembl 2006. Nucleic Acids Res
, vol.34
-
-
Birney, E.1
Andrews, D.2
Caccamo, M.3
Chen, Y.4
Clarke, L.5
-
4
-
-
0037137430
-
A comprehensive collection of chicken cDNAs
-
Boardman P, Sanz-Ezquerro J, Overton I, Burt D, Bosch E, et al: A comprehensive collection of chicken cDNAs. Curr Biol 12: 1965-1969 (2002).
-
(2002)
Curr Biol
, vol.12
, pp. 1965-1969
-
-
Boardman, P.1
Sanz-Ezquerro, J.2
Overton, I.3
Burt, D.4
Bosch, E.5
-
5
-
-
0037306116
-
The chicken as a model for large-scale analysis of vertebrate gene function
-
Brown W, Hubbard SJ, Tickle C, Wilson SA: The chicken as a model for large-scale analysis of vertebrate gene function. Nat Rev Genet 4: 87-98 (2003).
-
(2003)
Nat Rev Genet
, vol.4
, pp. 87-98
-
-
Brown, W.1
Hubbard, S.J.2
Tickle, C.3
Wilson, S.A.4
-
6
-
-
20944448106
-
Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis
-
Caldwell RB, Kierzek AM, Arakawa H, Bezzubov Y, Zaim J, et al: Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Genome Biol 6:R6 (2005).
-
(2005)
Genome Biol
, vol.6
-
-
Caldwell, R.B.1
Kierzek, A.M.2
Arakawa, H.3
Bezzubov, Y.4
Zaim, J.5
-
7
-
-
0025728412
-
Isolation and characterization of a 70-kDa metalloprotease (gelatinase) that is elevated in Rous sarcoma virus-transformed chicken embryo fibroblasts
-
Chen JM, Aimes RT, Ward GR, Youngleib GL, Quigley JP: Isolation and characterization of a 70-kDa metalloprotease (gelatinase) that is elevated in Rous sarcoma virus-transformed chicken embryo fibroblasts. J Biol Chem 266:5113-5121 (1991).
-
(1991)
J Biol Chem
, vol.266
, pp. 5113-5121
-
-
Chen, J.M.1
Aimes, R.T.2
Ward, G.R.3
Youngleib, G.L.4
Quigley, J.P.5
-
8
-
-
0024971526
-
Chicken egg white cystatin. Molecular cloning, nucleotide sequence, and tissue distribution
-
Colella R, Sakaguchi Y, Nagase H, Bird JW: Chicken egg white cystatin. Molecular cloning, nucleotide sequence, and tissue distribution. J Biol Chem 264: 17164-17169 (1989).
-
(1989)
J Biol Chem
, vol.264
, pp. 17164-17169
-
-
Colella, R.1
Sakaguchi, Y.2
Nagase, H.3
Bird, J.W.4
-
9
-
-
2442707676
-
The Ensembl automatic gene annotation system
-
Curwen V, Eyras E, Andrews TD, Clarke L, Mongin E, et al: The Ensembl automatic gene annotation system. Genome Res 14: 942-950 (2004).
-
(2004)
Genome Res
, vol.14
, pp. 942-950
-
-
Curwen, V.1
Eyras, E.2
Andrews, T.D.3
Clarke, L.4
Mongin, E.5
-
10
-
-
33744990135
-
A robust system for RNA interference in the chicken using a modified microRNA operon
-
Das RM, Van Hateren NJ, Howell GR, Farrell ER, Bangs FK, et al: A robust system for RNA interference in the chicken using a modified microRNA operon. Dev Biol 294: 554-563 (2006).
-
(2006)
Dev Biol
, vol.294
, pp. 554-563
-
-
Das, R.M.1
Van Hateren, N.J.2
Howell, G.R.3
Farrell, E.R.4
Bangs, F.K.5
-
11
-
-
2442700175
-
EST-Genes: Alternative splicing from ESTs in Ensembl
-
Eyras E, Caccamo M, Curwen V, Clamp M: EST-Genes: alternative splicing from ESTs in Ensembl. Genome Res 14: 976-987 (2004).
-
(2004)
Genome Res
, vol.14
, pp. 976-987
-
-
Eyras, E.1
Caccamo, M.2
Curwen, V.3
Clamp, M.4
-
12
-
-
25444516195
-
Gene finding in the chicken genome
-
Eyras E, Reymond A, Castelo R, Bye JM, Camara F, Flicek P: Gene finding in the chicken genome. BMC Bioinformatics 6: 131 (2005).
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 131
-
-
Eyras, E.1
Reymond, A.2
Castelo, R.3
Bye, J.M.4
Camara, F.5
Flicek, P.6
-
13
-
-
0037443035
-
Pre-mRNA splicing and human disease
-
Faustino NA, Cooper TA: Pre-mRNA splicing and human disease. Genes Dev 17: 419-437 (2003).
-
(2003)
Genes Dev
, vol.17
, pp. 419-437
-
-
Faustino, N.A.1
Cooper, T.A.2
-
14
-
-
33646480845
-
Genome-wide review of transcriptional complexity in mouse protein kinases and phosphatases
-
Forrest AR, Taylor DF, Crowe ML, Chalk AM, Waddell NJ, Kolle G: Genome-wide review of transcriptional complexity in mouse protein kinases and phosphatases. Genome Biol 7:R5 (2006).
-
(2006)
Genome Biol
, vol.7
-
-
Forrest, A.R.1
Taylor, D.F.2
Crowe, M.L.3
Chalk, A.M.4
Waddell, N.J.5
Kolle, G.6
-
15
-
-
0033962741
-
A consensus linkage map of the chicken genome
-
Groenen MA, Cheng HH, Bumstead N, Benkel BF, Briles WE, Burke T: A consensus linkage map of the chicken genome. Genome Res 10: 137-147 (2000).
-
(2000)
Genome Res
, vol.10
, pp. 137-147
-
-
Groenen, M.A.1
Cheng, H.H.2
Bumstead, N.3
Benkel, B.F.4
Briles, W.E.5
Burke, T.6
-
16
-
-
10644283823
-
Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
-
Hillier LW, Miller W, Birney E, Warren W, Hardison RC, et al: Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution. Nature 432: 695-716 (2004).
-
(2004)
Nature
, vol.432
, pp. 695-716
-
-
Hillier, L.W.1
Miller, W.2
Birney, E.3
Warren, W.4
Hardison, R.C.5
-
17
-
-
19944431653
-
Transcriptome analysis for the chicken based on 19,626 finished cDNA sequences and 485,337 expressed sequence tags
-
Hubbard SJ, Grafham DV, Beattie KJ, Overton IM, McLaren SR, Croning MD: Transcriptome analysis for the chicken based on 19,626 finished cDNA sequences and 485,337 expressed sequence tags. Genome Res 15: 174-183 (2005).
-
(2005)
Genome Res
, vol.15
, pp. 174-183
-
-
Hubbard, S.J.1
Grafham, D.V.2
Beattie, K.J.3
Overton, I.M.4
McLaren, S.R.5
Croning, M.D.6
-
18
-
-
18744390284
-
Selecting for functional alternative splices in ESTs
-
Kan Z, States D, Gish W: Selecting for functional alternative splices in ESTs. Genome Res 12: 1837-45 (2002).
-
(2002)
Genome Res
, vol.12
, pp. 1837-1845
-
-
Kan, Z.1
States, D.2
Gish, W.3
-
19
-
-
9144269670
-
EnsMart: A generic system for fast and flexible access to biological data
-
Kasprzyk A, Keefe D, Smedley D, London D, Spooner W, et al: EnsMart: a generic system for fast and flexible access to biological data. Genome Res 14: 160-169 (2004).
-
(2004)
Genome Res
, vol.14
, pp. 160-169
-
-
Kasprzyk, A.1
Keefe, D.2
Smedley, D.3
London, D.4
Spooner, W.5
-
20
-
-
23144458472
-
ASePCR: Alternative splicing electronic RT-PCR in multiple tissues and organs
-
Kim N, Lim D, Lee S, Kim H: ASePCR: alternative splicing electronic RT-PCR in multiple tissues and organs. Nucleic Acids Res 33:W681-685 (2005a).
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Kim, N.1
Lim, D.2
Lee, S.3
Kim, H.4
-
21
-
-
17844407888
-
ECgene: Genome-based EST clustering and gene modeling for alternative splicing
-
Kim N, Shin S, Lee S: ECgene: genome-based EST clustering and gene modeling for alternative splicing. Genome Res 15: 566-576 (2005b).
-
(2005)
Genome Res
, vol.15
, pp. 566-576
-
-
Kim, N.1
Shin, S.2
Lee, S.3
-
22
-
-
13444267842
-
ECgene: Genome annotation for alternative splicing
-
Kim P, Kim N, Lee Y, Kim B, Shin Y, Lee S: ECgene: genome annotation for alternative splicing. Nucleic Acids Res 33:D75-79 (2005).
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Kim, P.1
Kim, N.2
Lee, Y.3
Kim, B.4
Shin, Y.5
Lee, S.6
-
23
-
-
27244441641
-
The importance of being divisible by three in alternative splicing
-
Magen A, Ast G: The importance of being divisible by three in alternative splicing. Nucleic Acids Res 33: 5574-5582 (2005).
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 5574-5582
-
-
Magen, A.1
Ast, G.2
-
24
-
-
0034726682
-
Genomic structure and alternative splicing of chicken angiopoietin-2
-
Mezquita J, Mezquita P, Montserrat P, Mezquita B, Francone V, et al: Genomic structure and alternative splicing of chicken angiopoietin-2. Biochem Biophys Res Commun 275: 643-651 (2000).
-
(2000)
Biochem Biophys Res Commun
, vol.275
, pp. 643-651
-
-
Mezquita, J.1
Mezquita, P.2
Montserrat, P.3
Mezquita, B.4
Francone, V.5
-
25
-
-
0038617729
-
Alternative splicing in the human, mouse and rat genomes is associated with an increased frequency of exon creation and/or loss
-
Modrek B, Lee CJ: Alternative splicing in the human, mouse and rat genomes is associated with an increased frequency of exon creation and/or loss. Nat Genet 34: 177-180 (2002).
-
(2002)
Nat Genet
, vol.34
, pp. 177-180
-
-
Modrek, B.1
Lee, C.J.2
-
26
-
-
33646704772
-
Twinfilin is an actin-filament-severing protein and promotes rapid turnover of actin structures in vivo
-
Moseley JB, Okada K, Balcer HI, Kovar DR, Pollard TD, Goode BL: Twinfilin is an actin-filament-severing protein and promotes rapid turnover of actin structures in vivo. J Cell Sci 119: 1547-1557 (2006).
-
(2006)
J Cell Sci
, vol.119
, pp. 1547-1557
-
-
Moseley, J.B.1
Okada, K.2
Balcer, H.I.3
Kovar, D.R.4
Pollard, T.D.5
Goode, B.L.6
-
27
-
-
13444282474
-
InterPro, progress and status in 2005
-
Mulder NJ, Apweiler R, Attwood TK, Bairoch A, Bateman A, et al: InterPro, progress and status in 2005. Nucleic Acids Res 33:D201-205 (2005).
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Mulder, N.J.1
Apweiler, R.2
Attwood, T.K.3
Bairoch, A.4
Bateman, A.5
-
28
-
-
28844443988
-
Species-specific variation of alternative splicing and transcriptional initiation in six eukaryotes
-
Nagasaki H, Arita M, Nishizawa T, Suwa M, Gotoh O: Species-specific variation of alternative splicing and transcriptional initiation in six eukaryotes. Gene 364: 53-56 (2005).
-
(2005)
Gene
, vol.364
, pp. 53-56
-
-
Nagasaki, H.1
Arita, M.2
Nishizawa, T.3
Suwa, M.4
Gotoh, O.5
-
29
-
-
0031013173
-
Rat and chicken s-rex/NSP mRNA: Nucleotide sequence of main transcripts and expression of splice variants in rat tissues
-
Ninkina NN, Baka ID, Buchman VL: Rat and chicken s-rex/NSP mRNA: nucleotide sequence of main transcripts and expression of splice variants in rat tissues. Gene 184: 205-210 (1997).
-
(1997)
Gene
, vol.184
, pp. 205-210
-
-
Ninkina, N.N.1
Baka, I.D.2
Buchman, V.L.3
-
30
-
-
0037227960
-
Screening for gene function in chicken embryo using RNAi and electroporation
-
Pekarik V, Bourikas D, Miglino N, Joset P, Preiswerk S, Stoeckli ET: Screening for gene function in chicken embryo using RNAi and electroporation. Nat Biotech 21: 93-96 (2002).
-
(2002)
Nat Biotech
, vol.21
, pp. 93-96
-
-
Pekarik, V.1
Bourikas, D.2
Miglino, N.3
Joset, P.4
Preiswerk, S.5
Stoeckli, E.T.6
-
31
-
-
0036665564
-
Spatial expression of the alternatively spliced EIIIB and EIIIA segments of fibronectin in the early chicken embryo
-
Peters J, Sechrist J, Luetolf S, Loredo G, Bronner-Fraser M: Spatial expression of the alternatively spliced EIIIB and EIIIA segments of fibronectin in the early chicken embryo. Cell Commun Adhes 9: 221-238 (2002).
-
(2002)
Cell Commun Adhes
, vol.9
, pp. 221-238
-
-
Peters, J.1
Sechrist, J.2
Luetolf, S.3
Loredo, G.4
Bronner-Fraser, M.5
-
33
-
-
0032513204
-
The 67-kDa enzymatically inactive alternatively spliced variant of beta-galactosidase is identical to the elastin/laminin-binding protein
-
Privitera S, Prody CA, Callhan JW, Hinek A: The 67-kDa enzymatically inactive alternatively spliced variant of beta-galactosidase is identical to the elastin/laminin-binding protein. J Biol Chem 273: 6319-6326 (1998).
-
(1998)
J Biol Chem
, vol.273
, pp. 6319-6326
-
-
Privitera, S.1
Prody, C.A.2
Callhan, J.W.3
Hinek, A.4
-
34
-
-
24044447664
-
Automated generation of heuristics for biological sequence comparison
-
Slater GS, Birney E: Automated generation of heuristics for biological sequence comparison. BMC Bioinformatics 6: 31 (2005).
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 31
-
-
Slater, G.S.1
Birney, E.2
-
35
-
-
12344250822
-
Function of alternative splicing
-
Stamm S, Ben-Ari S, Rafalska I, Tang Y, Zhang Z, et al: Function of alternative splicing. Gene 344:1-20 (2005).
-
(2005)
Gene
, vol.344
, pp. 1-20
-
-
Stamm, S.1
Ben-Ari, S.2
Rafalska, I.3
Tang, Y.4
Zhang, Z.5
-
36
-
-
3543117773
-
The contribution of chicken embryology to the understanding of vertebrate limb development
-
Tickle C: The contribution of chicken embryology to the understanding of vertebrate limb development. Mech Dev 121: 1019-1029 (2004).
-
(2004)
Mech Dev
, vol.121
, pp. 1019-1029
-
-
Tickle, C.1
-
37
-
-
0141445987
-
Mammals have two twinfilin isoforms whose subcellular localizations and tissue distributions are differentially regulated
-
Vartiainen MK, Sarkkinen EM, Matilainen T, Salminen M, Lappalainen P: Mammals have two twinfilin isoforms whose subcellular localizations and tissue distributions are differentially regulated. J Biol Chem 278: 34347-34355 (2003).
-
(2003)
J Biol Chem
, vol.278
, pp. 34347-34355
-
-
Vartiainen, M.K.1
Sarkkinen, E.M.2
Matilainen, T.3
Salminen, M.4
Lappalainen, P.5
-
38
-
-
0035956417
-
Twinfilin is required for actin-dependent developmental processes in Drosophila
-
Wahlstrom G, Vartiainen M, Yamamoto L, Mattila PK, Lappalainen P, Heino TI: Twinfilin is required for actin-dependent developmental processes in Drosophila. J Cell Biol 155: 787-796 (2001).
-
(2001)
J Cell Biol
, vol.155
, pp. 787-796
-
-
Wahlstrom, G.1
Vartiainen, M.2
Yamamoto, L.3
Mattila, P.K.4
Lappalainen, P.5
Heino, T.I.6
-
39
-
-
10644268435
-
A physical map of the chicken genome
-
Wallis JW, Aerts J, Groenen MA, Crooijmans RP, Layman D, et al: A physical map of the chicken genome. Nature 432: 761-764 (2004).
-
(2004)
Nature
, vol.432
, pp. 761-764
-
-
Wallis, J.W.1
Aerts, J.2
Groenen, M.A.3
Crooijmans, R.P.4
Layman, D.5
-
40
-
-
33747086886
-
Using ESTs to improve the accuracy of de novo gene prediction
-
Wei C, Brent MR: Using ESTs to improve the accuracy of de novo gene prediction. BMC Bioinformatics 7: 327 (2006).
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 327
-
-
Wei, C.1
Brent, M.R.2
-
41
-
-
3242888358
-
Proteomic and sequence analysis of chicken lens crystallins reveals alternate splicing and translational forms of beta B2 and beta A2 crystallins
-
Wilmarth PA, Taube JR, Riviere MA, Duncan MK, David LL: Proteomic and sequence analysis of chicken lens crystallins reveals alternate splicing and translational forms of beta B2 and beta A2 crystallins. Invest Ophthalmol Vis Sci 45: 2705-2715 (2004).
-
(2004)
Invest Ophthalmol Vis Sci
, vol.45
, pp. 2705-2715
-
-
Wilmarth, P.A.1
Taube, J.R.2
Riviere, M.A.3
Duncan, M.K.4
David, L.L.5
-
43
-
-
0038349624
-
Impact of alternative initiation, splicing, and termination on the diversity of the mRNA transcripts encoded by the mouse transcriptome
-
Zavolan M, Kondo S, Schonbach C, Adachi J, Hume DA, et al: Impact of alternative initiation, splicing, and termination on the diversity of the mRNA transcripts encoded by the mouse transcriptome. Genome Res 6B:1290-1300 (2003).
-
(2003)
Genome Res
, vol.6 B
, pp. 1290-1300
-
-
Zavolan, M.1
Kondo, S.2
Schonbach, C.3
Adachi, J.4
Hume, D.A.5
-
44
-
-
11944270361
-
Molecular cloning and expression of two chicken invariant chain isoforms produced by alternative splicing
-
Zhong D, Yu W, Liu Y, Liu J, Li J: Molecular cloning and expression of two chicken invariant chain isoforms produced by alternative splicing. Immunogenetics 56: 650-656 (2004).
-
(2004)
Immunogenetics
, vol.56
, pp. 650-656
-
-
Zhong, D.1
Yu, W.2
Liu, Y.3
Liu, J.4
Li, J.5
|