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Volumn 189, Issue 15, 2007, Pages 5652-5657

DNA polymerases BI and D from the hyperthermophilic archaeon Pyrococcus furiosus both bind to proliferating cell nuclear antigen with their C-terminal PIP-box motifs

Author keywords

[No Author keywords available]

Indexed keywords

CYCLINE; DNA POLYMERASE; DNA POLYMERASE BI; DNA POLYMERASE D; EXONUCLEASE; MUTANT PROTEIN; UNCLASSIFIED DRUG;

EID: 34547615757     PISSN: 00219193     EISSN: None     Source Type: Journal    
DOI: 10.1128/JB.00073-07     Document Type: Article
Times cited : (30)

References (41)
  • 1
    • 0027217643 scopus 로고
    • Compilation, alignment, and phylogenetic relationships of DNA polymerases
    • Braithwaite, D. K., and J. Ito. 1993. Compilation, alignment, and phylogenetic relationships of DNA polymerases. Nucleic Acids Res. 21:787-802.
    • (1993) Nucleic Acids Res , vol.21 , pp. 787-802
    • Braithwaite, D.K.1    Ito, J.2
  • 2
    • 0035110865 scopus 로고    scopus 로고
    • Bruck, I., and M. O'Donnell. 2001. The ring-type polymerase sliding clamp family. Genome Biol. 2:REVIEWS3001. http://genomebiology.com/2001/ 2/1/REVIEWS/3001.
    • Bruck, I., and M. O'Donnell. 2001. The ring-type polymerase sliding clamp family. Genome Biol. 2:REVIEWS3001. http://genomebiology.com/2001/ 2/1/REVIEWS/3001.
  • 3
    • 0032745320 scopus 로고    scopus 로고
    • Functional interactions of a homolog of proliferating cell nuclear antigen with DNA polymerases in Archaea
    • Cann, I. K. O., S. Ishino, I. Hayashi, K. Komori, H. Toh, K. Morikawa, and Y. Ishino. 1999. Functional interactions of a homolog of proliferating cell nuclear antigen with DNA polymerases in Archaea. J. Bacteriol. 181:6591-6599.
    • (1999) J. Bacteriol , vol.181 , pp. 6591-6599
    • Cann, I.K.O.1    Ishino, S.2    Hayashi, I.3    Komori, K.4    Toh, H.5    Morikawa, K.6    Ishino, Y.7
  • 4
    • 0032875628 scopus 로고    scopus 로고
    • Two family B DNA polymerases from Aeropyrum pernix, an aerobic hyperthermophilic crenarchaeote
    • Cann, I. K. O., S. Ishino, N. Nomura, Y. Sako, and Y. Ishino. 1999. Two family B DNA polymerases from Aeropyrum pernix, an aerobic hyperthermophilic crenarchaeote. J. Bacteriol. 181:5984-5992.
    • (1999) J. Bacteriol , vol.181 , pp. 5984-5992
    • Cann, I.K.O.1    Ishino, S.2    Nomura, N.3    Sako, Y.4    Ishino, Y.5
  • 5
    • 0035093865 scopus 로고    scopus 로고
    • Biochemical analysis of replication factor C from the hyperthermophilic archaeon Pyrococcus furiosus
    • Cann, I. K. O., S. Ishino, M. Yuasa, H. Daiyasu, H. Toh, and Y. Ishino. 2001. Biochemical analysis of replication factor C from the hyperthermophilic archaeon Pyrococcus furiosus. J. Bacteriol. 183:2614-2623.
    • (2001) J. Bacteriol , vol.183 , pp. 2614-2623
    • Cann, I.K.O.1    Ishino, S.2    Yuasa, M.3    Daiyasu, H.4    Toh, H.5    Ishino, Y.6
  • 6
    • 0032814005 scopus 로고    scopus 로고
    • Archaeal DNA replication: Identifying the pieces to solve a puzzle
    • Cann, I. K. O., and Y. Ishino. 1999. Archaeal DNA replication: identifying the pieces to solve a puzzle. Genetics 152:1249-1267.
    • (1999) Genetics , vol.152 , pp. 1249-1267
    • Cann, I.K.O.1    Ishino, Y.2
  • 7
    • 0032564361 scopus 로고    scopus 로고
    • A heterodimeric DNA polymerase: Evidence that members of Euryarchaeota possess a distinct DNA polymerase
    • Cann, I. K. O., K. Komori, H. Toh, S. Kanai, and Y. Ishino. 1998. A heterodimeric DNA polymerase: evidence that members of Euryarchaeota possess a distinct DNA polymerase. Proc. Natl. Acad. Sci. USA 95:14250-14255.
    • (1998) Proc. Natl. Acad. Sci. USA , vol.95 , pp. 14250-14255
    • Cann, I.K.O.1    Komori, K.2    Toh, H.3    Kanai, S.4    Ishino, Y.5
  • 8
    • 0037251411 scopus 로고    scopus 로고
    • A heterotrimeric PCNA in the hyperthermophilic archaeon Sulfolobus solfataricus
    • Dionne, I., R. K. Nookala, S. P. Jackson, A. J. Doherty, and S. D. Bell. 2003. A heterotrimeric PCNA in the hyperthermophilic archaeon Sulfolobus solfataricus. Mol. Cell 11:275-282.
    • (2003) Mol. Cell , vol.11 , pp. 275-282
    • Dionne, I.1    Nookala, R.K.2    Jackson, S.P.3    Doherty, A.J.4    Bell, S.D.5
  • 9
    • 33645851036 scopus 로고    scopus 로고
    • The archaeal Hjm helicase has recQ-like functions, and may be involved in repair of stalled replication fork
    • Fujikane, R., H. Shinagawa, and Y. Ishino. 2006. The archaeal Hjm helicase has recQ-like functions, and may be involved in repair of stalled replication fork. Genes Cells 11:99-110.
    • (2006) Genes Cells , vol.11 , pp. 99-110
    • Fujikane, R.1    Shinagawa, H.2    Ishino, Y.3
  • 10
    • 18044384092 scopus 로고    scopus 로고
    • DNA polymerases that propagate the eukaryotic DNA replication fork
    • Garg, P., and P. M. Burgers. 2005. DNA polymerases that propagate the eukaryotic DNA replication fork. Crit. Rev. Biochem. Mol. Biol. 40:115-128.
    • (2005) Crit. Rev. Biochem. Mol. Biol , vol.40 , pp. 115-128
    • Garg, P.1    Burgers, P.M.2
  • 11
    • 1542682737 scopus 로고    scopus 로고
    • Archeal DNA replication: Eukaryal proteins in a bacterial context
    • Grabowski, B., and Z. Kelman. 2003. Archeal DNA replication: eukaryal proteins in a bacterial context. Annu. Rev. Microbiol. 57:487-516.
    • (2003) Annu. Rev. Microbiol , vol.57 , pp. 487-516
    • Grabowski, B.1    Kelman, Z.2
  • 12
    • 20444377771 scopus 로고    scopus 로고
    • The hyperthermophilic euryarchaeota Pyrococcus abyssi likely requires the two DNA polymerases D and B for DNA replication
    • Henneke, G., D. Flament, U. Hubscher, J. Querellou, and J. P. Raffin. 2005. The hyperthermophilic euryarchaeota Pyrococcus abyssi likely requires the two DNA polymerases D and B for DNA replication. J. Mol. Biol. 350:53-64.
    • (2005) J. Mol. Biol , vol.350 , pp. 53-64
    • Henneke, G.1    Flament, D.2    Hubscher, U.3    Querellou, J.4    Raffin, J.P.5
  • 13
    • 33749033347 scopus 로고    scopus 로고
    • The replication clamp-loading machine at work in the three domains of life
    • Indiani, C., and M. O'Donnell. 2006. The replication clamp-loading machine at work in the three domains of life. Nat. Rev. Mol. Cell Biol. 7:751-761.
    • (2006) Nat. Rev. Mol. Cell Biol , vol.7 , pp. 751-761
    • Indiani, C.1    O'Donnell, M.2
  • 14
    • 1542649458 scopus 로고    scopus 로고
    • Mutational analysis of Pyrococcus furiosus replication factor C based on the three-dimensional structure
    • Ishino, S., T. Oyama, M. Yuasa, K. Morikawa, and Y. Ishino. 2003. Mutational analysis of Pyrococcus furiosus replication factor C based on the three-dimensional structure. Extremophiles 7:169-175.
    • (2003) Extremophiles , vol.7 , pp. 169-175
    • Ishino, S.1    Oyama, T.2    Yuasa, M.3    Morikawa, K.4    Ishino, Y.5
  • 15
    • 0032415809 scopus 로고    scopus 로고
    • The euryarchaeotes, a subdomain of Archaea, survive on a single DNA polymerase: Fact or farce?
    • Ishino, Y., and I. K. O. Cann. 1998. The euryarchaeotes, a subdomain of Archaea, survive on a single DNA polymerase: fact or farce? Genes Genet. Syst. 73:323-336.
    • (1998) Genes Genet. Syst , vol.73 , pp. 323-336
    • Ishino, Y.1    Cann, I.K.O.2
  • 16
    • 0031922356 scopus 로고    scopus 로고
    • A novel DNA polymerase family found in Archaea
    • Ishino, Y., K. Komori, I. K. O. Cann, and Y. Koga. 1998. A novel DNA polymerase family found in Archaea. J. Bacteriol. 180:2232-2236.
    • (1998) J. Bacteriol , vol.180 , pp. 2232-2236
    • Ishino, Y.1    Komori, K.2    Cann, I.K.O.3    Koga, Y.4
  • 17
    • 0034981262 scopus 로고    scopus 로고
    • DNA polymerases from euryarchaeota
    • Ishino, Y., and S. Ishino. 2001. DNA polymerases from euryarchaeota. Methods Enzymol. 334:249-260.
    • (2001) Methods Enzymol , vol.334 , pp. 249-260
    • Ishino, Y.1    Ishino, S.2
  • 18
    • 0034741835 scopus 로고    scopus 로고
    • Functional interactions of an archaeal sliding clamp with mammalian clamp loader and DNA polymerase δ
    • Ishino, Y., T. Tsurimoto, S. Ishino, and I. Cann. 2001. Functional interactions of an archaeal sliding clamp with mammalian clamp loader and DNA polymerase δ. Genes Cells 6:699-706.
    • (2001) Genes Cells , vol.6 , pp. 699-706
    • Ishino, Y.1    Tsurimoto, T.2    Ishino, S.3    Cann, I.4
  • 19
    • 22244478079 scopus 로고    scopus 로고
    • Cellular DNA replicases: Components and dynamics at the replication fork
    • Johnson, A., and M. O'Donnell. 2005. Cellular DNA replicases: components and dynamics at the replication fork. Annu. Rev. Biochem. 74:283-315.
    • (2005) Annu. Rev. Biochem , vol.74 , pp. 283-315
    • Johnson, A.1    O'Donnell, M.2
  • 20
    • 33748767654 scopus 로고    scopus 로고
    • Identification of a novel binding motif in Pyrococcus furiosus DNA ligase for the functional interaction with proliferating cell nuclear antigen
    • Kiyonari, S., K. Takayama, H. Nishida, and Y. Ishino. 2006. Identification of a novel binding motif in Pyrococcus furiosus DNA ligase for the functional interaction with proliferating cell nuclear antigen. J. Biol. Chem. 281:28023-28032.
    • (2006) J. Biol. Chem , vol.281 , pp. 28023-28032
    • Kiyonari, S.1    Takayama, K.2    Nishida, H.3    Ishino, Y.4
  • 21
    • 0033956483 scopus 로고    scopus 로고
    • Functional interdependence of DNA polymerizing and 3′-5′ exonucleolytic activities in Pyrococcus furiosus DNA polymerase I
    • Komori, K., and Y. Ishino. 2000. Functional interdependence of DNA polymerizing and 3′-5′ exonucleolytic activities in Pyrococcus furiosus DNA polymerase I. Protein Eng. 13:41-47.
    • (2000) Protein Eng , vol.13 , pp. 41-47
    • Komori, K.1    Ishino, Y.2
  • 23
    • 0033199713 scopus 로고    scopus 로고
    • Did DNA replication evolve twice independently?
    • Leipe, D. D., L. Aravind, and E. V. Koonin. 1999. Did DNA replication evolve twice independently? Nucleic Acids Res. 27:3389-3401.
    • (1999) Nucleic Acids Res , vol.27 , pp. 3389-3401
    • Leipe, D.D.1    Aravind, L.2    Koonin, E.V.3
  • 24
    • 0038577149 scopus 로고    scopus 로고
    • A novel type of replicative enzyme harbouring ATPase, primase and DNA polymerase activity
    • Lipps, G., S. Rother, C. Hart, and G. Krauss. 2003. A novel type of replicative enzyme harbouring ATPase, primase and DNA polymerase activity. EMBO J. 22:2516-2525.
    • (2003) EMBO J , vol.22 , pp. 2516-2525
    • Lipps, G.1    Rother, S.2    Hart, C.3    Krauss, G.4
  • 25
    • 0036734527 scopus 로고    scopus 로고
    • Physical interaction between proliferating cell nuclear antigen and replication factor C from Pyrococcus furiosus
    • Matsumiya, S., S. Ishino, Y. Ishino, and K. Morikawa. 2002. Physical interaction between proliferating cell nuclear antigen and replication factor C from Pyrococcus furiosus. Genes Cells 7:911-922.
    • (2002) Genes Cells , vol.7 , pp. 911-922
    • Matsumiya, S.1    Ishino, S.2    Ishino, Y.3    Morikawa, K.4
  • 26
    • 0037377527 scopus 로고    scopus 로고
    • Intermolecular ion pairs maintain the toroidal structure of Pyrococcus furiosus PCNA
    • Matsumiya, S., S. Ishino, Y. Ishino, and K. Morikawa. 2003. Intermolecular ion pairs maintain the toroidal structure of Pyrococcus furiosus PCNA. Protein Sci. 12:823-831.
    • (2003) Protein Sci , vol.12 , pp. 823-831
    • Matsumiya, S.1    Ishino, S.2    Ishino, Y.3    Morikawa, K.4
  • 27
    • 0035107856 scopus 로고    scopus 로고
    • Crystal structure of an archaeal DNA sliding clamp: Proliferating cell nuclear antigen from Pyrococcus furiosus
    • Matsumiya, S., Y. Ishino, and K. Morikawa. 2001. Crystal structure of an archaeal DNA sliding clamp: proliferating cell nuclear antigen from Pyrococcus furiosus. Protein Sci. 10:17-23.
    • (2001) Protein Sci , vol.10 , pp. 17-23
    • Matsumiya, S.1    Ishino, Y.2    Morikawa, K.3
  • 28
    • 0035783136 scopus 로고    scopus 로고
    • Three-dimensional electron microscopy of the clamp loader small subunit from Pyrococcus furiosus
    • Mayanagi, K., T. Miyata, T. Oyama, Y. Ishino, and K. Morikawa. 2001. Three-dimensional electron microscopy of the clamp loader small subunit from Pyrococcus furiosus. J. Struct. Biol. 134:35-45.
    • (2001) J. Struct. Biol , vol.134 , pp. 35-45
    • Mayanagi, K.1    Miyata, T.2    Oyama, T.3    Ishino, Y.4    Morikawa, K.5
  • 30
    • 25444480278 scopus 로고    scopus 로고
    • Open clamp structure in the clamp-loading complex visualized by electron microscopic image analysis
    • Miyata, T., H. Suzuki, T. Oyama, K. Mayanagi, Y. Ishino, and K. Morikawa. 2005. Open clamp structure in the clamp-loading complex visualized by electron microscopic image analysis. Proc. Natl. Acad. Sci. USA 102:13795-13800.
    • (2005) Proc. Natl. Acad. Sci. USA , vol.102 , pp. 13795-13800
    • Miyata, T.1    Suzuki, H.2    Oyama, T.3    Mayanagi, K.4    Ishino, Y.5    Morikawa, K.6
  • 32
    • 25144451780 scopus 로고    scopus 로고
    • Identification of the critical region in replication factor C from Pyrococcus furiosus for the stable complex formation with proliferating cell nuclear antigen and DNA
    • Nishida, H., S. Ishino, T. Miyata, K. Morikawa, and Y. Ishino. 2005. Identification of the critical region in replication factor C from Pyrococcus furiosus for the stable complex formation with proliferating cell nuclear antigen and DNA. Genes Genet. Syst. 80:83-93.
    • (2005) Genes Genet. Syst , vol.80 , pp. 83-93
    • Nishida, H.1    Ishino, S.2    Miyata, T.3    Morikawa, K.4    Ishino, Y.5
  • 33
    • 33645750976 scopus 로고    scopus 로고
    • Nishida, H., S. Matsumiya, D. Tsuchiya, Y. Ishino, and K. Morikawa. 2006. Stoichiometric complex formation by proliferating cell nuclear antigen (PCNA) and its interacting protein: purification and crystallization of the DNA polymerase and PCNA monomer mutant complex from Pyrococcus furiosus. Acta Crystallogr. F Struct. Biol. Cryst. Commun. 62:253-256.
    • Nishida, H., S. Matsumiya, D. Tsuchiya, Y. Ishino, and K. Morikawa. 2006. Stoichiometric complex formation by proliferating cell nuclear antigen (PCNA) and its interacting protein: purification and crystallization of the DNA polymerase and PCNA monomer mutant complex from Pyrococcus furiosus. Acta Crystallogr. F Struct. Biol. Cryst. Commun. 62:253-256.
  • 35
    • 0034840471 scopus 로고    scopus 로고
    • Atomic structure of the clamp loader small subunit from Pyrococcus furiosus
    • Oyama, T., Y. Ishino, I. K. O. Cann, S. Ishino, and K. Morikawa. 2001. Atomic structure of the clamp loader small subunit from Pyrococcus furiosus. Mol. Cell 8:455-463.
    • (2001) Mol. Cell , vol.8 , pp. 455-463
    • Oyama, T.1    Ishino, Y.2    Cann, I.K.O.3    Ishino, S.4    Morikawa, K.5
  • 36
    • 4644250659 scopus 로고    scopus 로고
    • Domain topology of the DNA polymerase D complex from a hyperthermophilic archaeon Pyrococcus horikoshii
    • Tang, X. F., Y. Shen, E. Matsui, and I. Matsui. 2004. Domain topology of the DNA polymerase D complex from a hyperthermophilic archaeon Pyrococcus horikoshii. Biochemistry 43:11818-11827.
    • (2004) Biochemistry , vol.43 , pp. 11818-11827
    • Tang, X.F.1    Shen, Y.2    Matsui, E.3    Matsui, I.4
  • 37
    • 0031196901 scopus 로고    scopus 로고
    • A novel DNA polymerase in the hyperthermophilic archaeon, Pyrococcus furiosus: Gene cloning, expression, and characterization
    • Uemori, T., Y. Sato, I. Kato, H. Doi, and Y. Ishino. 1997. A novel DNA polymerase in the hyperthermophilic archaeon, Pyrococcus furiosus: gene cloning, expression, and characterization. Genes Cells 2:499-512.
    • (1997) Genes Cells , vol.2 , pp. 499-512
    • Uemori, T.1    Sato, Y.2    Kato, I.3    Doi, H.4    Ishino, Y.5
  • 38
    • 0028912012 scopus 로고
    • The hyperthermophilic archaeon Pyrodictium occultum has two α-like DNA polymerases
    • Uemori, T., Y. Ishino, H. Doi, and I. Kato. 1995. The hyperthermophilic archaeon Pyrodictium occultum has two α-like DNA polymerases. J. Bacteriol. 177:2164-2177.
    • (1995) J. Bacteriol , vol.177 , pp. 2164-2177
    • Uemori, T.1    Ishino, Y.2    Doi, H.3    Kato, I.4
  • 39
    • 0023634094 scopus 로고
    • Production of single-stranded plasmid DNA
    • Vieira, V., and J. Messing. 1987. Production of single-stranded plasmid DNA. Methods Enzymol. 153:3-11.
    • (1987) Methods Enzymol , vol.153 , pp. 3-11
    • Vieira, V.1    Messing, J.2
  • 40
    • 0037523309 scopus 로고    scopus 로고
    • The diverse spectrum of sliding clamp interacting proteins
    • Vivona, J. B., and Z. Kelman. 2003. The diverse spectrum of sliding clamp interacting proteins. FEBS Lett. 546:167-172.
    • (2003) FEBS Lett , vol.546 , pp. 167-172
    • Vivona, J.B.1    Kelman, Z.2
  • 41
    • 0033777562 scopus 로고    scopus 로고
    • The puzzle of PCNA's many partners
    • Warbrick, E. M. 2000. The puzzle of PCNA's many partners. BioEssays 22:997-1006.
    • (2000) BioEssays , vol.22 , pp. 997-1006
    • Warbrick, E.M.1


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