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Volumn 35, Issue SUPPL.2, 2007, Pages

TaveRNA: A web suite for RNA algorithms and applications

Author keywords

[No Author keywords available]

Indexed keywords

RNA;

EID: 34547604008     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkm303     Document Type: Article
Times cited : (12)

References (15)
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  • 2
    • 24644505259 scopus 로고    scopus 로고
    • Fewer genes, more noncoding RNA
    • Claverie, J. (2005) Fewer genes, more noncoding RNA. Science, 309, 1529-1530.
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  • 3
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    • RNA secondary structure prediction via energy density minimization. Proc. RECOMB
    • Alkan, C., Karakoc, E., Sahinalp, C., Unrau, P.J., Ebhardt, H.A., Zhang, K. and Buhler, J. (2006) RNA secondary structure prediction via energy density minimization. Proc. RECOMB, LNBI 3909, 130-142.
    • (2006) LNBI , vol.3909 , pp. 130-142
    • Alkan, C.1    Karakoc, E.2    Sahinalp, C.3    Unrau, P.J.4    Ebhardt, H.A.5    Zhang, K.6    Buhler, J.7
  • 4
    • 0019876473 scopus 로고
    • Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information
    • Zuker, M. and Stiegler, P. (1981) Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information. Nucleic Acids Res., 9, 133-148.
    • (1981) Nucleic Acids Res. , vol.9 , pp. 133-148
    • Zuker, M.1    Stiegler, P.2
  • 5
    • 26444596190 scopus 로고    scopus 로고
    • Consensus folding of unaligned RNA sequences revisited. Proc. RECOMB
    • Bafna, V., Tang, H. and Zhang, S. (2005) Consensus folding of unaligned RNA sequences revisited. Proc. RECOMB, LNBI 3500, 172-187.
    • (2005) LNBI , vol.3500 , pp. 172-187
    • Bafna, V.1    Tang, H.2    Zhang, S.3
  • 6
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    • Secondary structure prediction for aligned RNA sequences
    • Hofacker, I.L., Fekete, M. and Stadler, P.F. (2002) Secondary structure prediction for aligned RNA sequences. J. Mol. Biol., 319, 1059-1066.
    • (2002) J. Mol. Biol. , vol.319 , pp. 1059-1066
    • Hofacker, I.L.1    Fekete, M.2    Stadler, P.F.3
  • 8
    • 0033591465 scopus 로고    scopus 로고
    • Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure
    • Mathews, D., Sabina, J., Zuker, M. and Turner, D. (1999) Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure. J. Mol. Biol., 288, 911-940.
    • (1999) J. Mol. Biol. , vol.288 , pp. 911-940
    • Mathews, D.1    Sabina, J.2    Zuker, M.3    Turner, D.4
  • 9
    • 0033524952 scopus 로고    scopus 로고
    • A dynamic programming algorithm for RNA structure prediction including pseudoknots
    • Rivas, E. and Eddy, S.R. (1999) A dynamic programming algorithm for RNA structure prediction including pseudoknots. J. Mol. Biol., 285, 2053-2068.
    • (1999) J. Mol. Biol. , vol.285 , pp. 2053-2068
    • Rivas, E.1    Eddy, S.R.2
  • 11
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    • The effect of loop size in antisense and target RNAs on the efficiency of antisense RNA control
    • Hjalt, T. and Wagner, E.G.H. (1992) The effect of loop size in antisense and target RNAs on the efficiency of antisense RNA control. Nucleic Acids Res., 20, 6723-6732.
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    • Hjalt, T.1    Wagner, E.G.H.2
  • 12
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    • An improved algorithm for nucleic acid secondary structure display
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  • 13
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    • Edit distance between two RNA structures
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* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.