X-ray structure analysis of a metalloprotein with enhanced active-site resolution using in situ x-ray absorption near edge structure spectroscopy

Proceedings of the National Academy of Sciences of the United States of America

Volumn 104, Issue 15, 2007, Pages 6211-6216

  Arcovito, Alessandro ^a   Benfatto, Maurizio ^b   Cianci, Michele ^c   Hasnain, S Samar ^c   Nienhaus, Karin ^d   Nienhaus, G Ulrich ^d,e   Savino, Carmelinda ^a   Strange, Richard W ^c   Vallone, Beatrice ^a   Della Longa, Stefano ^b,f  

^a SAPIENZA UNIVERSITY OF ROME   (Italy)

^b INFN LABORATORI NAZIONALI DI FRASCATI   (Italy)

^c DARESBURY LABORATORY   (United Kingdom)

^d UNIVERSITY OF ULM   (Germany)

^e UNIVERSITY OF ILLINOIS AT URBANA CHAMPAIGN   (United States)

^f UNIVERSITY OF L'AQUILA   (Italy)

Author keywords

Crystallographic restraints; Myoglobin; Protein crystallography; Synchroton radiation

Indexed keywords

HEME; IRON; METALLOPROTEIN; MYOGLOBIN;

ACCURACY; ARTICLE; ATOM; CRYSTAL STRUCTURE; GEOMETRY; IN SITU X RAY ABSORPTION NEAR EDGE STRUCTURE SPECTROSCOPY; NONHUMAN; PARAMETER; PRIORITY JOURNAL; PROTEIN STRUCTURE; QUANTITATIVE ANALYSIS; ROENTGEN SPECTROSCOPY; SPERM WHALE; STRUCTURE ANALYSIS; SYNCHROTRON RADIATION; X RAY CRYSTALLOGRAPHY; X RAY DIFFRACTION;

ANIMALS; METALLOPROTEINS; MODELS, MOLECULAR; MYOGLOBIN; SPECTRUM ANALYSIS; SPERM WHALE; SYNCHROTRONS; X-RAY DIFFRACTION;

PHYSETERIDAE;

EID: 34547516852     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.0608411104     Document Type: Article

References (48)

1. Hill HAO, Sadler PJ, Thomson AJ (1999) Metal Sites in Proteins and Models (Springer, Berlin).
2. Cowan JA (1996) Inorganic Biochemistry: An Introduction (Wiley, New York).
3. Nilsson K, Hersleth HP, Rod TH, Andersson KK, Ryde U (2004) Biophys J 87:3437-3447.
4. Koningsberger DC, Prins R (1988) X-Ray Absorption: Principles, Applications, Techniques of EXAFS, SEXAFS, and XANES (Wiley, New York).
5. Rehr JJ, Albers RC (2000) Rev Mod Phys 72:621-654.
6. Green MT, Dawson JH, Gray HB (2004) Science 304:1653-1656.
7. Sheldrick GM, Schneider TR (1997) Methods Enzymol 227:319-343.
8. Abola A, Bernstein FC, Bryant SH, Koetzle TF, Weng J (1987) in Protein Data Bank in Crystallographic Databases-Information Content, Software Systems, Scientific Applications, eds Allen FH, Bergerhoff G, Sievers R (Data Commission of the International Union of Crystallography, Bonn), pp 107-132.
9. Antonini E, Brunori M (1971) Hemoglobin and Myoglobin in Their Reactions with Ligands (North-Holland, Amsterdam).
10. Frauenfelder H, Wolynes PG (1985) Science 229:337-345.
11. Frauenfelder H, McMahon BH, Fenimore PW (2003) Proc Natl Acad Sci USA 100:8615-8617.
12. Kendrew JC, Dickerson RE, Strandberg BE, Hart RG, Davies DR, Phillips DR, Phillips DC, Shore VC (1960) Nature 185:422-427.
13. Nienhaus GU, Young RD (1996) in Encyclopedia of Applied Physics, ed Trigg GL (Wiley, New York), Vol 15, pp 163-184.
14. Nienhaus GU (2005) Protein-Ligand Interactions (Humana, Totowa, NJ).
15. Parak FG, Nienhaus GU (2002) Chem Phys Chem 3:249-254.
16. Natoli CR, Benfatto M, Della Longa S, Hatada K (2003) J Synchr Rad 10:26-42.
17. Bianconi A, Congiu-Castellano A, Durham PJ, Hasnain SS, Phillips S (1985) Nature 318:685-687.
18. Shulman RG, Eisenberger P, Blumberg WE, Stombaugh NA (1975) Proc Natl Acad Sci USA 72:4003-4007.
19. Benfatto M, Della Longa S (2001) J Synchr Rad 8:1087-1094.
20. Cianci M, Antonyuk S, Bliss N, Bailey MW, Buffey SG, Cheung KC, Clarke JA, Derbyshire GE, Ellis MJ, Enderby MJ, et al (2005) J Synchr Rad 12:455-466.
21. Hasnain SS, Hodgson KO (1999) J Synchr Rad 6:864-875.
22. Della Longa S, Arcovito A, Vallone B, Castellano AC, Kahn R, Vicat J, Soldo Y, Hazemann JL (1999) J Synchr Rad 6:1138-1147.
23. Hayakawa K, Hatada K, D'Angelo P, Della Longa S, Natoli CR, Benfatto M (2004) J Am Chem Soc 126:15618-15623.
24. Della Longa S, Arcovito A, Girasole M, Hazemann JL, Benfatto M (2001) Phys Rev Lett 87:155501.
25. Morris AL, MacArthur MW, Hutchinson EG, Thornton JM (1992) Proteins 12:345-364.
26. Murshudov GN, Vagin AA, Dodson EJ (1997) Acta Crystallogr D 53:240-255.
27. Bolognesi M, Rosano C, Losso R, Borassi A, Rizzi M, Wittenberg JB, Boffi A, Ascenzi P (1999) Biophys J 77:1093-1099.
28. Galloway J (1985) Nature 318:602.
29. Fermi G, Perutz MF, Shulman RG (1987) Proc Natl Acad Sci USA 84:6167-6168.
30. Shulman RG (1987) Proc Natl Acad Sci USA 84:973-974.
31. Yachandra VK (1995) Methods Enzymol 246:638-675.
32. Cruickshank DW (1999) Acta Crystallogr D 55:583-601.
33. Teng TY, Moffat K (2002) J Synchr Rad 9:198-201.
34. Schlichting I, Berendzen J, Chu K, Stock AM, Maves SA, Benson DE, Sweet RM, Ringe D, Petsko GA, Sligar SG (2000) Science 287:1615-1622.
35. Binsted N, Hasnain SS (1996) J Synchr Rad 3:185-196.
36. Natoli CR, Benfatto M, Della Longa S, Hatada K (2003) J Synchr Rad 10:26-42.
37. Kendrew JC, Parrish RG (1956) Proc R Soc London Ser A 238:305-324.
38. Teng TY (1990) J Appl Crystallogr 23:387-391.
39. Otwinowski Z, Minor W (1997) Methods Enzymol 276:307-326.
40. Vagin A, Teplyakov A (1997) J Appl Crystallogr 30:1022-1025.
41. Emsley P, Cowtan K (2004) Acta Crystallogr D 60:2126-2132.
42. Lamzin VS, Wilson KS (1993) Acta Crystallogr D 49:129-147.
43. Benfatto M, D' Angelo P, Della Longa S, Pavel NV (2002) Phys Rev B 65:174205.
44. D'Angelo P, Benfatto M, Della Longa S, Pavel NV (2002) Phys Rev B 66:064209.
45. Frank P, Benfatto M, Szilagyi RK, D'Angelo P, Della Longa S, Hodgson KO (2005) Inorg Chem 44:1922-1933.
46. Arcovito A, Lamb DC, Nienhaus GU, Hazemann JL, Benfatto M, Della Longa S (2005) Biophys J 88:2954-2964.
47. Munoz-Paez A, Diaz-Moreno S, Sanchez Marcos E, Rehr JJ (2000) Inorg Chem 39:3784-3790.
48. Chen K, Yuldasheva S, Penner-Hahn JE, O'Halloran TV (2003) J Am Chem Soc 125:12088-12089.