Protein 3D HP model folding simulation based on ACO

Proceedings - ISDA 2006: Sixth International Conference on Intelligent Systems Design and Applications

Volumn 1, Issue , 2006, Pages 410-415

  Song, Jie ^a   Cheng, Jiaxing ^a   Zheng, Tingting ^a  

^a ANHUI UNIVERSITY   (China)

Author keywords

3D protein HP model; Ant colony Optimization (ACO); Local coordinate system; Right hand rule

Indexed keywords

COMPUTER SIMULATION; CONFORMATIONS; DYNAMIC PROGRAMMING; MATHEMATICAL MODELS; PROBLEM SOLVING; PROTEINS;

3D PROTEIN HP MODELS; ANT COLONY OPTIMIZATION (ACO); LOCAL COORDINATE SYSTEMS; RIGHT HAND RULES;

OPTIMIZATION;

EID: 34547507814     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/ISDA.2006.221     Document Type: Conference Paper

References (12)

1. Graham A. Cox, Thomas V. Mortimer-Jones, Robert P. Taylor, Roy L. Johnston, "Development and optimization of a noval genetic algorithm for studying model protein folding," Theor Chem Ace vol.112, pp163-178, 2004.
2. Lau K. F. and Dill K. A. "A lattice statistical mechanics model of the conformational and sequence spaces of proteins," Marcromolecules vol.22 pp3986-3997, 1989.
3. Lau K. F. and Dill K. A. , "Theory for protein mutability and biogenesis," Proceedings of the National Academy of Sciences USA vol.87,pp638-642,2000.
4. Nayak a, Sinclair A, Zwick U (1999) J Comp Biol 6:13
5. Kaizhi,Ken A.Dill. "Forces of tertiary structural organizaton in globular protein" . Proc. Natl. Acad. Sci. USA., vol.92 pp146-150,Jan.2005
6. Dill KA, Fiebig KM, Chan HS: "Cooperativity in Protein-Folding Kinetics" . Proc Natl Acad Sci USA, vol90,pp1942-1946, 1993.
7. Liang F,Wong Wh: "Evolutingary Monte Carlo for protein folding simulations," J Chem Phys, vol.115(7),pp3374-3380,2001
8. Dorigo, M., V. Maniezzo, and A. Colorni. "Positive feedback as a search strategy," Technical Report 91-016, Dip. Elettronica, Politecnico di Milano, Italy, 1991.
9. Dorigo, M. and G. Di Caro. "The ant colony optimization meta-heuristic. In D. Corne," New Ideas in Optimization, pp. 11-32. McGraw-Hill, 1999.
10. Dorigo, M., G. Di Caro and L.M. Gambardella. "Ant Algorithms for Discrete Optimization," Artificial Life vol.5(2),pp137-172, 1999.
11. Andrew S. Tranenbaum. Computer Networks, Fourth Edtion. Pearson Education Asia Limited and Tsinghua University Press, 2004.
12. Kaizhi Yue, Klaus M.Fiebig, Paul D.Thomas, Hue Sun Chan, Eugene I.Shakhnovich and Ken A.Dill. "A test of lattice protein folding algorithms," . Proc. Natl. Acad. Sci. USA. ,vol. 92:325-329, 1995