Functional characterization of antagonistic fluorescent pseudomonads associated with rhizospheric soil of rice (Oryza sativa L.)

Journal of Microbiology and Biotechnology

Volumn 17, Issue 6, 2007, Pages 919-927

  Ayyadurai, N ^a,b   Ravindra Naik, P ^a   Sakthivel, N ^a  

^a PONDICHERRY UNIVERSITY   (India)

^b Pusan National University   (South Korea)

Author keywords

16S rRNA; Antagonistic fluorescent pseudomonads; Antibiotics; Cyclopropane; Dendrogram; FAME

Indexed keywords

CELLULASE; CHITINASE; CYCLOPROPANE; FATTY ACID ESTER; POLYGALACTURONASE; PROTEINASE; RNA 16S;

ARTICLE; BACTERIAL STRAIN; BACTERIUM CULTURE; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATION; BIODIVERSITY; CONTROLLED STUDY; CULTURE MEDIUM; HIGH PERFORMANCE LIQUID CHROMATOGRAPHY; NONHUMAN; NUCLEOTIDE SEQUENCE; PLANT PATHOGEN INTERACTION; PSEUDOMONAS; PSEUDOMONAS AERUGINOSA; PSEUDOMONAS FLUORESCENS; PSEUDOMONAS PSEUDOALCALIGENES; PSEUDOMONAS PUTIDA; RHIZOSPHERE; RICE; RNA ANALYSIS; SOIL ANALYSIS; SOIL MICROFLORA; STRAIN DIFFERENCE; THIN LAYER CHROMATOGRAPHY;

ANTIBIOTICS, ANTIFUNGAL; FLUORESCENCE; ORYZA SATIVA; PHYLOGENY; PLANT ROOTS; PSEUDOMONAS; RNA, RIBOSOMAL, 16S; SOIL MICROBIOLOGY;

ORYZA SATIVA; PSEUDOMONAS FLUORESCENS GROUP; THERMOANAEROBACTERIALES;

EID: 34547468290     PISSN: 10177825     EISSN: 17388872     Source Type: Journal    
DOI: None     Document Type: Article

References (29)

1. Ahn, T., J. Ka, G. Lee, and H. Song. 2007. Microcosm study for revegetation of barren land with wild plants by some plant growth-promoting rhizobacteria. J. Microbiol. Biotechnol. 17: 52-57.
2. Ayyadurai, N., P. Ravindra Naik, M. Sreehari Rao, R. Sunish Kumar, S. K. Samrat, M. Manohar, and N. Sakthivel. 2006. Isolation and characterization of a novel banana rhizosphere bacterium as fungal antagonist and microbial adjuvant in micropropagation of banana. J. Appl. Microbiol. 100: 926-937.
3. Bakker, W. A. and B. Schippers. 1987. Microbial cyanide production in the rhizosphere in relation to potato yield reduction and Pseudomonas sp. mediated plant growth stimulation. Soil Biol. Biochem. 19: 451-457.
4. Cattelan, A. J., P. G. Hartel, and F. F. Fuhrmann. 1999. Screening for plant growth promoting rhizobacteria to promote early soybean growth. Soil Sci. Soc. Am. J. 63: 1670-1680.
5. de Souza, J. T. and J. M. Raaijmakers. 2003. Polymorphisms within the PrnD and PltC genes from pyrrolnitrin and pyoluteorin-producing Pseudomonas and Burkholderia spp. FEMS Microbiol. Ecol. 43: 21-34.
6. Ellis, R. J., I. P. Thompson, and M. J. Bailey. 1999. Temporal fluctuations in the pseudomonad population associated with sugar beet leaves. FEMS Microbiol. Ecol. 28: 345-356.
7. Ellis, R. J., T. M. Timms-Wilson, and M. J. Bailey. 2000. Identification of conserved traits in fluorescent pseudomonads with antifungal activity. Environ. Microbiol. 2: 274-284.
8. Emmert, E. A. B. and J. Handelsman. 1999. Biocontrol of plant disease: A (Gram) positive perspective. FEMS Microbiol. Lett. 171: 1-9.
9. Higgins, D. G., A. T. Bleashy, and R. Fuchs. 1992. Clustal V: Improved software for multiple sequence alignment. Comput. Appl. Biosci. 8: 189-191.
10. Hu, H. B., Y. Q. Xu, F. Chen, X. H. Zhang, and B. K. Hur. 2005. Isolation and characterization of a new fluorescent Pseudomonas strain that produces both phenazine-1-carboxylic acid and pyoluteorin. J. Microbiol. Biotechnol. 15: 86-90.
11. Keel, C., U. Schnider, M. Maurhofer, C. Voisard, J. Laville, U. Burger, P. Wirthner, D. Haas, and G. Defago. 1992. Suppression of root diseases by Pseudomonas fluorescens CHA0: Importance of the bacterial secondary metabolite 2,4-diacetylphloroglucinol. Mol. Plant-Microbe Inter. 5: 4-13.
12. Kimura, M. 1980. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16: 111-120.
13. King, E. O., M. K. Ward, and D. E. Raney. 1954. Two simple media for demonstration of pyocyanin and fluorescein. J. Lab. Clin. Med. 44: 301-307.
14. Kumar, S., K. Tamura, I. B. Jakobsen, and M. Nei. 2001. MEGA2: Molecular evolutionary genetics analysis software. Bioinforrnatics 17: 1244-1245
15. Mew, T. W. and A. M. Rosales. 1986. Bacterization office plants for control of sheath blight caused by Rhizoctonia solani. Phytopathology 76: 1260-1264.
16. O'Sullivan, D. J. and F. O'Gara. 1992. Traits of fluorescent Pseudomonas spp. involved in suppression of plant root pathogens. Microbiol. Rev. 56: 662-676.
17. Ravindra Naik, P. and N. Sakthivel. 2006. Functional characterization of a novel hydrocarbonoclastic Pseudomonas sp. strain PUP6 with plant-growth-promoting traits and antifungal potential. Res. Microbiol. 157: 538-546.
18. Renwick, A., R. Campbell, and S. Coe. 1991. Assessment of in vivo screening systems for potential biocontrol agents of Gaeumannomyces graminis. Plant Pathol. 40: 524-532.
19. Saitou, N. and M. Nei. 1987. The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4: 406-425.
20. Sakthivel, N. and S. S. Gnanamanickam. 1987. Evaluation of Pseudomonas fluorescens for suppression of sheath rot disease and for enhancement of grain yields in rice (Oryza sativa L.). Appl. Environ. Microbiol. 53: 2056-2059.
21. Sakthivel, N. and S. S. Gnanamanickam. 1989. Incidence of different biovars of Pseudomonas fluorescens in flooded rice rhizospheres in India. Agric. Ecosyst. Environ. 25: 287-298.
22. Sands, D. C. and A. D. Rovira. 1971. Pseudomonas fluorescens biotype C4 the dominant fluorescent pseudomonads in south Australian soils and wheat rhizosphere. J. Appl. Bacteriol. 34: 261-275.
23. Smibert, R. M. and N. R. Krieg. 1994. Phenotypic characterization, pp. 607-654. In P. Gerhardt, R. G. E. Murray, W. A. Wood, and N. R. Krieg (eds.). Methods for General and Molecular Bacteriology. American Society of Microbiology, Washington, D.C.
24. Sunish Kumar, R., N. Ayyadurai, P. Pandiaraja, A. V. Reddy, Y. Venkateswarlu, O. Prakash, and N. Sakthivel. 2005. Characterization of antifungal metabolite produced by a new strain Pseudomonas aeruginosa PUPa3 that exhibits broad spectrum antifungal activity and biofertilizing traits. J. Appl. Microbiol. 98: 145-154.
25. Thomashow, L. S., D. M. Weller, R. F. Bonsall, and L. S. Pierson. 1990. Production of the antibiotic phenazine-1-carboxylic acid of fluorescent Pseudomonas species in the rhizosphere of wheat. Appl. Environ. Microbiol. 56: 908-912.
26. Vancanneyt, M., S. Witt, W. R. Abraham, K. Kersters, and H. L. Fredrickson. 1996. Fatty acid content in whole-cell hydrolysates and phospholipids fractions of pseudomonads: A taxonomic evaluation. Syst. Appl. Microbiol. 19: 528-540.
27. Van Loon, L. C., P. A. H. M. Bakker, and C. M. J. Pieterse. 1998. Systemic resistance induced by rhizosphere bacteria. Annu. Rev. Phytopathol. 36: 453-483.
28. Wang, A. Y. and J. J. E. Cronan. 1994. The growth phase-dependent synthesis of cyclopropane fatty acids in Escherichia coli is the result of an rpoS (KatF)-dependent promoter plus enzyme instability. Mol. Microbiol. 11: 1009-1017.
29. Weisburg, W. G., S. M. Barns, and D. J. Lane. 1991. 16S ribosomal DNA amplification for phylogenetic study. J. Bacteriol. 173: 697-703.