Oceanicola marinus sp. nov., a marine alphaproteobacterium isolated from seawater collected off Taiwan

International Journal of Systematic and Evolutionary Microbiology

Volumn 57, Issue 7, 2007, Pages 1625-1629

  Lin, Kuan Yin ^a   Sheu, Shih Yi ^a   Chang, Poh Shing ^a   Cho, Jang Cheon ^b   Chen, Wen Ming ^a  

^a NATIONAL KAOHSIUNG UNIVERSITY OF APPLIED SCIENCES   (Taiwan)

^b Inha University   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

FATTY ACID; RNA 16S; SEA WATER;

ALPHAPROTEOBACTERIA; ARTICLE; BACTERIAL STRAIN; BACTERIUM ISOLATE; CONTROLLED STUDY; DNA DNA HYBRIDIZATION; GRAM NEGATIVE BACTERIUM; MARINE BACTERIUM; NEW GENUS; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; OCEANICOLA; OCEANICOLA BATSENSIS; OCEANICOLA GRANULOSUS; OCEANICOLA MARINUS; OCEANICOLA NANHAIENSIS; PHENOTYPE; PHYLOGENY; PRIORITY JOURNAL; RHODOBACTERALES; RNA SEQUENCE; SEQUENCE HOMOLOGY; TAIWAN; WATER SAMPLING;

BACTERIAL TYPING TECHNIQUES; DNA, BACTERIAL; DNA, RIBOSOMAL; FATTY ACIDS; GENES, RRNA; LOCOMOTION; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; PHYLOGENY; RHODOBACTERACEAE; RNA, BACTERIAL; RNA, RIBOSOMAL, 16S; SEAWATER; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, NUCLEIC ACID; TAIWAN;

ALPHAPROTEOBACTERIA; BACTERIA (MICROORGANISMS); NEGIBACTERIA; OCEANICOLA; OCEANICOLA BATSENSIS; OCEANICOLA GRANULOSUS; RHODOBACTERALES;

EID: 34547461107     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.65020-0     Document Type: Article

References (22)

1. Chen, W. M., Laevens, S., Lee, T. M., Coenye, T., De Vos, P., Mergeay, M. & Vandamme, P. (2001). Ralstonia taiwanensis sp. nov., isolated from root nodules of Mimosa species and sputum of a cystic fibrosis patient. Int J Syst Evol Microbiol 51, 1729-1735.
2. Cho, J.-C. & Giovannoni, S. J. (2003a). Croceibacter atlanticus gen. nov., sp. nov., a novel marine bacterium in the family Flavobacteriaceae. Syst Appl Microbiol 26, 76-83.
3. Cho, J.-C. & Giovannoni, S. J. (2003b). Parvularcula bermudensis gen. nov., sp. nov., a marine bacterium that forms a deep branch in the α-Proteobacteria. Int J Syst Evol Microbiol 53, 1031-1036.
4. Cho, J.-C. & Giovannoni, S. J. (2004). Oceanicola granulosus gen. nov., sp. nov. and Oceanicola batsensis sp. nov., poly-β-hydroxybutyrate-producing marine bacteria in the order 'Rhodobacterales'. Int J Syst Evol Microbiol 54, 1129-1136.
5. Chung, Y. C., Kobayashi, T., Kanai, H., Akiba, T. & Kudo, T. (1995). Purification and properties of extracellular amylase from the hyperthermophilic archeon Thermococcus profundus DT5432. Appl Environ Microbiol 61, 1502-1506.
6. Ezaki, T., Hashimoto, Y. & Yabuuchi, E. (1989). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39, 224-229.
7. Felsenstein, J. (1981). Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17, 368-376.
8. Fitch, W. M. & Margoliash, E. (1967). Construction of phylogenetic trees: a method based on mutation distances as estimated from cytochrome c sequences is of general applicability. Science 155, 279-284.
9. GCG (1995). Wisconsin Package Version 8.1 Program Manual. Madison, WI: Genetics Computer Group.
10. Gu, J., Guo, B., Wang, Y.-N., Yu, S.-L., Inamori, R., Qu, R., Ye, Y.-G. & Wu, X-L. (2007). Oceanicola nanhaiensis sp. nov., isolated from sediments of the South China Sea. Int J Syst Evol Microbiol 57, 157-160.
11. Hall, T. A. (1999). BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41, 95-98.
12. Jukes, T. H. & Cantor, C. R. (1969). Evolution of protein molecules. In Mammalian Protein Metabolism, vol. 3, pp. 21-132. Edited by H. N. Munro. New York: Academic Press.
13. Kluge, A. G. & Farris, F. S. (1969). Quantitative phyletics and the evolution of anurans. Syst Zool 18, 1-32.
14. Kumar, S., Tamura, K. & Nei, M. (2004). MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Biomform 5, 150-163.
15. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G + C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
16. Powers, E. M. (1995). Efficacy of the Ryu nonstaining KOH technique for rapidly determining gram reactions of food-borne and waterborne bacteria and yeasts. Appl Environ Microbiol 61, 3756-3758.
17. Reichenbach, H. (1992). The order Cytophagales. In The Prokaryotes, a Handbook on the Biology of Bacteria: Ecophysiology, Isolation, Identification, Applications, 2nd edn, pp. 3631-3675. Edited by A. Balows, H. G. Trüper, M. Dworkin, W. Harder & K. H. Schleifer. New York: Springer.
18. Richards, W. R. (1994). Analysis of pigments: bacteriochlorophylls. In Chemical Methods in Prokaryotic Systematics, pp. 345-401. Edited by M. Goodfellow & A. G. O'Donnell. Chichester: Wiley.
19. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
20. Sasser, M. (1990). Identification of bacteria by gas chromatography of cellular fatty acids, MIDI Technical Note 101. Newark, DE: MIDI Inc.
21. Schmidt, K., Connor, A. & Britton, G. (1994). Analysis of pigments: carotenoids and related polyenes. In Chemical Methods in Prokaryotic Systematics, pp. 403-461. Edited by M. Goodfellow & A. G. O'Donnell. Chichester: Wiley.
22. Wayne, L. G., Brenner, D. J., Colwell, R. R., Grimont, P. A. D., Kandler, O., Krichevsky, M. I., Moore, L. H., Moore, W. E. C., Murray, R. G. E. & other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches of bacterial systematics. Int J Syst Bacteriol 37, 463-464.