Proteome analysis of Paenibacillus polymyxa E681 affected by barley

Journal of Microbiology and Biotechnology

Volumn 17, Issue 6, 2007, Pages 934-944

  Seul, Keyung Jo ^a   Park, Seung Hwan ^a   Ryu, Choong Min ^a   Lee, Yong Hyun ^b   Ghim, Sa Youl ^a  

^a Korea Research Institute of Bioscience and Biotechnology (KRIBB)   (South Korea)

^b Kyungpook National University   (South Korea)

Author keywords

2D PAGE; Bacteria plant interaction; Barley; Paenibacillus polymyxa E681; Proteome

Indexed keywords

ABC TRANSPORTER ADENOSINE TRIPHOSPHATE UUP BINDING PROTEIN; BACTERIAL PROTEIN; BINDING PROTEIN; CYTOPLASM PROTEIN; DEXTRO ALANINE DEXTRO ALANINE LIGASE; DEXTRO ALANINE DEXTRO ALANINE LIGASE A; FLAGELLAR HOOK ASSOCIATED 2 PROTEIN; GLUCOSE 6 PHOSPHATE DEHYDROGENASE; HEAT SHOCK PROTEIN; ISOPENTENYL DIPHOSPHATE DELTA ISOMERASE; LIPOPROTEIN; PHYTOHORMONE; PROTEIN HTPG; PROTEIN ORFZ; PYRROLOQUINOLINEQUINONE; RIBONUCLEASE; RIBONUCLEASE PH; SPERMIDINE SYNTHASE; TRIACYLGLYCEROL LIPASE; UNCLASSIFIED DRUG;

ARTICLE; BACTERIAL STRAIN; BACTERIUM CULTURE; BARLEY; CELLULAR DISTRIBUTION; CONTROLLED STUDY; CULTURE MEDIUM; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; NONHUMAN; PAENIBACILLUS POLYMYXA; PLANT GROWTH; PLANT PATHOGEN INTERACTION; PROTEIN ANALYSIS; PROTEIN DETERMINATION; PROTEIN EXPRESSION; PROTEIN LOCALIZATION; PROTEIN METABOLISM; PROTEOMICS; QUANTITATIVE ANALYSIS; RHIZOME; SUPERNATANT; TWO DIMENSIONAL GEL ELECTROPHORESIS;

BACTERIAL PROTEINS; CYTOSOL; GRAM-POSITIVE ENDOSPORE-FORMING BACTERIA; HORDEUM; PROTEOME;

BACTERIA (MICROORGANISMS); HORDEUM; PAENIBACILLUS POLYMYXA;

EID: 34547422387     PISSN: 10177825     EISSN: 17388872     Source Type: Journal    
DOI: None     Document Type: Article

References (37)

1. Ash, C., F. G. Priest, and M. D. Collins, 1993. Molecular identification of rRNA group 3 bacilli using a PCR probe test. Proposal for the creation of a new genus Paenibacillus. Antonie van Leewenhoek 64: 253-260.
2. Belimov, A. A., V. I. Safronova, T. A. Sergeyeva, T. N. Egorova, V. A. Matveyeva, V. E. Tsyganov, A. Y. Borisov, I. A. Tikhonovich, C. Kluge, A. Preisfeld, K. J. Dietz, and V. V. Stepanok. 2001. Characterization of plant growth promoting rhizobacteria isolated from polluted soils and containing 1-aminocyclopropane-l-carboxylate deaminase. Can. J. Microbiol. 47: 642-652.
3. Boddey, R. M., L. G. da Silva, V. M. Reis, B. J. R. Alves, and S. Urquiaga. 1999. Assessment of bacterial nitrogen fixation in grass species, pp. 705-726. In E. W. Triplett (ed.), Nitrogen Fixation in Bacteria: Molecular and Cellular Biology. Horizon Scientific Press, U.K.
4. Bradford, M. M. 1976. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye-binding. Anal. Biochem. 72: 248-254.
5. Briat, J.-F. 1992. Iron assimilation and storage in prokaryotes. J. Gen. Microbiol. 138: 2475-2483.
6. Buettner, K., J. Bernhardt, C. Scharf, R. Schmid, U. Maeder, C. Eymann, H. Antelmann, A. Voelker, U. Voelker, and M. Hecker. 2001. A comprehensive two-dimensional map of cytosolic proteins of Bacillus subtilis. Electrophoresis 22: 2908-2935.
7. Glick, B. R., C. L. Patten, G. Holguin, and D. M. Penrose. 1999. Biochemical and Genetic Mechanisms Used by Plant Growth Promoting Bacteria. Imperial College Press, London.
8. Gophna, U. and E. Z. Ron. 2002. Virulence and the heat shock response. Int. J. Med. Microbiol. 292: 1-9.
9. Gouzou, L., G. Burtin, R. Philippy, F. Bartoli, and T. Heulin. 1993. Effect of inoculation with Bacillus polymyxa on soil aggregation in the wheat rhizosphere: Preliminary examination. Geoderma 56: 479-491.
10. Holl, F. B., C. P. Chanway, R. Turkington, and R. A. Radley. 1988. Response of crested wheatgrass (Agropyron cristatum L.), perennial ryegrass (Lolium perenne) and white clover (Triifolium repens L.) to inoculation with Bacillus polymyxa. Soil Biol. Biochem. 20: 19-24.
11. Jang, M., B. C. Park, D. H. Lee, C. W. Kho, S. E. Cho, B. R. Lee, and S. G. Park. 2006. Proteome analysis of Bacillus subtilis when overproducing secretory protein. J. Microbiol. Biotechnol. 16: 368-373.
12. James, E. K. 2000. Nitrogen fixation in endophytic and associative symbiosis. Field Crops Res. 65: 197-209.
13. T. J. Microbiol. Biotechnol. 16: 1650-1655.
14. Kajimura, Y. and M. Kaneda. 1996. Fusaricidin A, a new depsipeptide antibiotic produced by Bacillus polymyxa KT-8: Taxonomy, fermentation, isolation, structure elucidation and biological activity. J. Antibiot. 49: 129-135.
15. Katiyar, V. and R. Goel. 2004. Improved plant growth from seed bacterization using siderophore overproducing cold resistant mutant of Pseudomonas fluorescens. J. Microbiol. Biotechnol. 14: 653-657.
16. Klee, H. J., M. B. Hayford, K. A. Kretzmer, G. F. Barry, and G. M. Kishore. 1991. Control of ethylene synthesis by expression of a bacterial enzyme in transgenic tomato plants. Plant Cell 3: 1187-1193.
17. Kloepper, J. W., R. M. Zablotowicz, E. M. Tipping, and R. Lifshitz. 1991. pp. 315-326. In K. L. Keister and P. B. Cregan (eds.). The Rhizosphere and Plant Growth. Kluwer. Academic Publishers, Dordecht, U.S.A.
18. Kloepper, J. W. 1992. Plant growth-promoting rhizobacteria as biological control agents, pp. 255-274. In F. B. Metting Jr. (ed.). Soil Microbial Ecology: Applications in Agricultural and Environmental Management. Marcel Dekker Inc., NY, U.S.A.
19. Kurusu, K. and K. Ohba. 1987. New peptide antibiotics LIF03, F04, F05, F07, and F08, produced by Bacillus polymyxa. I. Isolation and characterization. J. Antibiot. 40: 1506-1514.
20. Leong, J. 1986. Siderophores: Their biochemistry and possible role in the biocontrol of plant pathogens. Annu. Rev. Phytopathol. 24: 187-209.
21. Lim, H. S., J. M. Lee, and S. D. Kim. 2002. A plant growth-promoting Pseudomonas fluorescens GL20: Mechanism for disease suppression, outer membrane receptors for ferric siderophore, and genetic improvement for increased biocontrol efficacy. J. Microbiol. Biotechnol. 12: 249-257.
22. Neilands, J. B. and S. A. Leong. 1986. Siderophores in relation to plant growth and disease. Anna. Rev. Plant Physiol. 37: 187-208.
23. Oakley, B. R., D. R. Kirsch, and N. R. Morris. 1980. A simplified ultrasensitive silver stain for detecting proteins in polyacrylamide gels. Anal. Biochem. 105: 361-363.
24. O'Farrell, P. H. 1975. High-resolution two-dimensional electrophoresis of proteins. J. Biol. Chem. 250: 4007-4021.
25. Park, S.-H., J. F. Kim, C. C. Kim, H. Jeong, S.-K. Choi, C.-G. Hur, T. K. Oh, Y. H. Moon, and C. S. Park. 2002. Genome sequencing and analysis of Paenibacillus polymyxa E681, a plant-probiotic bacterium. 9tn International Symposium on the Genetics of Industrial Microorganisms. S18: 68.
26. Pichard, B., J. P. Larue, and D. Thouvenot. 1995. Gavaserin and saltavalin, new peptide antibiotics produced by Bacillus polymyxa. FEMS Microbiol. Lett. 133: 215-218.
27. Richardson, A. E. 2001. Prospects for using soil microorganisms to improve the acquisition of phosphorus by plants. Aust. J. Plant Physiol. 28: 897-906.
28. Rodriguez, H. and R. Fraga. 1999. Phosphate solubilizing bacteria and their role in plant growth promotion. Biotechnol. Adv. 17: 319-339.
29. Rosado, A. S. and L. Seldin. 1993. Production of a potentially novel antimicrobial substance by Bacillus polymyxa. World J. Microbiol. Biotechnol. 9: 521-528.
30. Ryu, C. M. and C. S. Park. 1997. Enhancement of plant growth induced by endospore forming PGPR strain, Bacillus polymyxa E681, pp. 209-211. In: Plant Growth-promoting Rhizobacteria: Present Status and Future Prospects. Proceedings of the 4th International Workshop on Plant Growth-promoting Rhizobacteria, Japan-OECD joint workshop, Sapporo.
31. Ryu, C. M., J. W. Kim, O. H. Choi, S. Y. Park, S. H. Park, and C. S. Park. 2005. Nature of a root-associated Paenibacillus polymyxa from field-grown winter barley in Korea. J. Microbiol. Biotechnol. 15: 984-991.
32. Sattar, M. A. and A. C. Gaur. 1987. Production of auxins and gibberellins by phosphate-dissolving microorganisms. Zentralbl. Mikrobiol. 142: 393-395.
33. Sauer, K., A. K. Camper, G. D. Ehrlich, J. W. Costerton, and D. G. Davies. 2002. Pseudomonas aeruginosa displays multiple phenotypes during development as a biofilm. J. Bacteriol. 184: 1140-1154.
34. Shevchenko, A., M. Wilm, O. Vorm, and M. Mann. 1996. Mass spectrometric sequencing of proteins silver-stained polyacrylamide gels. Anal. Chem. 68: 850-858.
35. Storm, D. R., K. S. Rosenthal, and P. E. Swanson. 1977. Polymyxin and related peptide antibiotics. Annu. Rev. Biochem. 46: 723-763.
36. Timmusk, S., B. Nicander, U. Granhall, and E. Tillberg. 1999. Cytokinin production by Paenibacillus polymyxa. Soil Biol. Biochem. 31: 1847-1852.
37. Whiteley, M., M. G. Bangera, R. E. Bumgarner, M. R. Parsek, G. M. Teitzel, S. Lory, and E. P. Greenberg. 2001. Gene expression in Pseudomonas aeruginosa biofilms. Nature 413: 860-864.