1/f Fluctuations of DNA temperature at thermal denaturation

Physical Review E - Statistical, Nonlinear, and Soft Matter Physics

Volumn 75, Issue 6, 2007, Pages

  Joyeux, Marc ^a   Buyukdagli, Sahin ^a   Sanrey, Michaël ^a  

^a LIPHY   (France)

Author keywords

[No Author keywords available]

Indexed keywords

CORRELATION METHODS; DENATURATION; ENERGY DISSIPATION; TEMPERATURE CONTROL;

COLLECTIVE MOTIONS; LANGEVIN EQUATIONS; TEMPERATURE FLUCTUATIONS;

DNA;

EID: 34547379331     PISSN: 15393755     EISSN: 15502376     Source Type: Journal    
DOI: 10.1103/PhysRevE.75.061914     Document Type: Article

References (24)

1. D. Poland and H. A. Scheraga, Theory of Helix-Coil Transitions in Biopolymers (Academic Press, New York, 1970).
2. R. M. Wartell and A. S. Benight, Phys. Rep. PRPLCM 0370-1573 10.1016/0370-1573(85)90060-2 126, 67 (1985).
3. M. Peyrard, Nonlinearity NONLE5 0951-7715 10.1088/0951-7715/17/2/R01 17, R1 (2004).
4. O. Gotoh, Adv. Biophys. ADVBAT 0065-227X 16, iii (1983).
5. D. Poland and H. A. Scheraga, J. Chem. Phys. JCPSA6 0021-9606 10.1063/1.1727786 45, 1464 (1966).
6. E. Carlon, E. Orlandini, and A. L. Stella, Phys. Rev. Lett. PRLTAO 0031-9007 10.1103/PhysRevLett.88.198101 88, 198101 (2002).
7. T. Dauxois, M. Peyrard, and A. R. Bishop, Phys. Rev. E PLEEE8 1063-651X 10.1103/PhysRevE.47.R44 47, R44 (1993).
8. M. Joyeux and S. Buyukdagli, Phys. Rev. E PLEEE8 1063-651X 10.1103/PhysRevE.72.051902 72, 051902 (2005).
9. K. S. Nagapriya, A. K. Raychaudhuri, and D. Chatterji, Phys. Rev. Lett. PRLTAO 0031-9007 10.1103/PhysRevLett.96.038102 96, 038102 (2006).
10. M. Techera, L. L. Daemen, and E. W. Prohofsky, Phys. Rev. A PLRAAN 1050-2947 10.1103/PhysRevA.40.6636 40, 6636 (1989).
11. R. D. Blake, J. W. Bizzaro, J. D. Blake, G. R. Day, S. G. Delcourt, J. Knowles, K. A. Marx, and J. SantaLucia, Bioinformatics BOINFP 1367-4803 10.1093/bioinformatics/15.5.370 15, 370 (1999).
12. S. Buyukdagli, M. Sanrey, and M. Joyeux, Chem. Phys. Lett. CHPLBC 0009-2614 10.1016/j.cplett.2005.12.009 419, 434 (2006).
13. A. Brünger, C. B. Brooks, and M. Karplus, Chem. Phys. Lett. CHPLBC 0009-2614 10.1016/0009-2614(84)80098-6 105, 495 (1984).
14. T. Shimomura, K. Denda, A. Kitamura, T. Kawaguchi, M. Kito, J. Kondo, S. Kagaya, L. Qin, H. Takata, K. Miyazawa, and N. Kitamura, J. Biol. Chem. JBCHA3 0021-9258 10.1074/jbc.272.10.6370 272, 6370 (1997).
15. R. Balian, From Microphysics to Macrophysics-Methods and Applications of Statistical Physics (Springer-Verlag, Berlin, 1991).
16. B. S. Alexandrov, L. T. Wille, K. O. Rasmussen, A. R. Bishop, and K. B. Blagoev, Phys. Rev. E PLEEE8 1063-651X 10.1103/PhysRevE.74.050901 74, 050901 (R) (2006).
17. T. Geisel, A. Zacherl, and G. Radons, Phys. Rev. Lett. PRLTAO 0031-9007 10.1103/PhysRevLett.59.2503 59, 2503 (1987).
18. J. Barré and T. Dauxois, Europhys. Lett. EULEEJ 0295-5075 10.1209/epl/i2001-00396-3 55, 164 (2001).
19. N. Theodorakopoulos, T. Dauxois, and M. Peyrard, Phys. Rev. Lett. PRLTAO 0031-9007 10.1103/PhysRevLett.85.6 85, 6 (2000).
20. S. Buyukdagli and M. Joyeux, Phys. Rev. E PLEEE8 1063-651X 10.1103/PhysRevE.73.051910 73, 051910 (2006).
21. A. R. Bizzarri and S. Cannistraro, Phys. Lett. A PYLAAG 0375-9601 10.1016/S0375-9601(97)00803-7 236, 596 (1997).
22. M. Takano, T. Takahashi, and K. Nagayama, Phys. Rev. Lett. PRLTAO 0031-9007 10.1103/PhysRevLett.80.5691 80, 5691 (1998).
23. A. R. Bizzarri and S. Cannistraro, Physica A PHYADX 0378-4371 10.1016/S0378-4371(98)00651-7 267, 257 (1999).
24. P. Carlini, A. R. Bizzarri, and S. Cannistraro, Physica D PDNPDT 0167-2789 10.1016/S0167-2789(02)00426-8 165, 242 (2002).