DNA stretch during electrophoresis due to a step change in mobility

Physical Review E - Statistical, Nonlinear, and Soft Matter Physics

Volumn 76, Issue 1, 2007, Pages

  Underhill, Patrick T ^a,b   Doyle, Patrick S ^a  

^a Massachusetts Institute of Technology Cambridge   (United States)

^b University of Wisconsin Madison   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

COMPUTATIONAL GEOMETRY; DNA; PARAMETER ESTIMATION; STRAIN RATE;

DEBORAH NUMBER; DNA STRETCH; NONHOMOGENEOUS STRAIN RATE; WEISSENBERG NUMBER;

ELECTROPHORESIS;

EID: 34547297980     PISSN: 15393755     EISSN: 15502376     Source Type: Journal    
DOI: 10.1103/PhysRevE.76.011805     Document Type: Article

References (28)

1. W. D. Volkmuth and R. H. Austin, Nature (London) NATUAS 0028-0836 10.1038/358600a0 358, 600 (1992).
2. J. Han and H. Craighead, Science SCIEAS 0036-8075 10.1126/science.288. 5468.1026 288, 1026 (2000).
3. K. M. Phillips, J. W. Larson, G. R. Yantz, C. M. D'Antoni, M. V. Gallo, K. A. Gillis, N. M. Goncalves, L. A. Neely, S. R. Gullans, and R. Gilmanshin, Nucleic Acids Res. NARHAD 0305-1048 10.1093/nar/gki895 33, 5829 (2005).
4. A. Szeri, S. Wiggins, and L. Leal, J. Fluid Mech. 228, 207 (1991). 0022-1120
5. A. Panwar and S. Kumar, J. Chem. Phys. JCPSA6 0021-9606 10.1063/1.1523912 118, 925 (2003).
6. M. Chopra, L. Lei, H. Hu, M. Burns, and R. Larson, J. Rheol. JORHD2 0148-6055 10.1122/1.1595097 47, 1111 (2003).
7. R. Duggal and M. Pasquali, J. Rheol. JORHD2 0148-6055 10.1122/1.1764825 48, 745 (2004).
8. G. Randall, K. Schultz, and P. Doyle, Lab Chip LCAHAM 1473-0197 10.1039/b515326c 6, 516 (2006).
9. D. Long, J.-L. Viovy, and A. Ajdari, Phys. Rev. Lett. PRLTAO 0031-9007 10.1103/PhysRevLett.76.3858 76, 3858 (1996).
10. G. Randall and P. Doyle, Macromolecules MAMOBX 0024-9297 10.1021/ma048073g 38, 2410 (2005).
11. F. Brochard-Wyart, Europhys. Lett. 23, 105 (1993). 0295-5075
12. F. Brochard-Wyart, H. Hervet, and P. Pincus, Europhys. Lett. 26, 511 (1994). 0295-5075
13. R. Rzehak, W. Kromen, T. Kawakatsu, and W. Zimmermann, Eur. Phys. J. E EPJSFH 1292-8941 10.1007/s101890050036 2, 3 (2000).
14. R. G. Larson, T. T. Perkins, D. E. Smith, and S. Chu, Phys. Rev. E PLEEE8 1063-651X 10.1103/PhysRevE.55.1794 55, 1794 (1997).
15. B. Ladoux and P. Doyle, Europhys. Lett. EULEEJ 0295-5075 10.1209/epl/i2000-00467-y 52, 511 (2000).
16. T. Squires and S. Quake, Rev. Mod. Phys. RMPHAT 0034-6861 10.1103/RevModPhys.77.977 77, 977 (2005).
17. D. Long and A. Ajdari, Electrophoresis ELCTDN 0173-0835 10.1002/elps.1150170628 17, 1161 (1996).
18. R. Larson, J. Rheol. JORHD2 0148-6055 10.1122/1.1835336 49, 1 (2005).
19. P. deGennes, Scaling Concepts in Polymer Physics (Cornell University Press, Ithaca, NY, 1979).
20. H. Öttinger, Stochastic Processes in Polymeric Fluids: Tools and Examples for Developing Simulation Algorithms (Springer, Berlin, 1996).
21. P. Grassia, E. Hinch, and L. Nitsche, J. Fluid Mech. JFLSA7 0022-1120 10.1017/S0022112095000176 282, 373 (1995).
22. P. Underhill and P. Doyle, J. Rheol. JORHD2 0148-6055 10.1122/1.2206713 50, 513 (2006).
23. P. Underhill and P. Doyle, J. Non-Newtonian Fluid Mech. JNFMDI 0377-0257 10.1016/j.jnnfm.2003.10.006 122, 3 (2004).
24. J. Marko and E. Siggia, Macromolecules MAMOBX 0024-9297 10.1021/ma00130a008 28, 8759 (1995).
25. T. Perkins, D. Smith, R. Larson, and S. Chu, Science SCIEAS 0036-8075 10.1126/science.7701345 268, 83 (1995).
26. S. Ferree and H. Blanch, Biophys. J. 85, 2539 (2003). 0006-3495
27. P. J. Shrewsbury, S. J. Muller, and D. Liepmann, Biomed. Microdevices 3, 225 (2001). 1387-2176
28. J. Kim and P. Doyle, Lab Chip LCAHAM 1473-0197 10.1039/b612021k 7, 213 (2007).