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Volumn 30, Issue 6, 2007, Pages 453-462

Mycobacterium species identification - A new approach via dnaJ gene sequencing

Author keywords

dnaJ; Identification; Mycobacterium; Taxonomic study

Indexed keywords

HEAT SHOCK PROTEIN 65; PROTEIN DNAJ; RNA 16S; RNA POLYMERASE BETA SUBUNIT;

EID: 34547230703     PISSN: 07232020     EISSN: 16180984     Source Type: Journal    
DOI: 10.1016/j.syapm.2007.06.003     Document Type: Article
Times cited : (32)

References (35)
  • 1
    • 0029121646 scopus 로고
    • Demonstration of Mycobacterium kansasii species heterogeneity by the amplification of the 16S-23S spacer region
    • Abed Y., Bollet C., and de Micco P. Demonstration of Mycobacterium kansasii species heterogeneity by the amplification of the 16S-23S spacer region. J. Med. Microbiol. 43 (1995) 156-158
    • (1995) J. Med. Microbiol. , vol.43 , pp. 156-158
    • Abed, Y.1    Bollet, C.2    de Micco, P.3
  • 2
    • 9744231340 scopus 로고    scopus 로고
    • Dissection of phylogenetic relationships among 19 rapidly growing Mycobacterium species by 16S rRNA, hsp65, sodA, recA and rpoB gene sequencing
    • Adekambi T., and Drancourt M. Dissection of phylogenetic relationships among 19 rapidly growing Mycobacterium species by 16S rRNA, hsp65, sodA, recA and rpoB gene sequencing. Int. J. Syst. Evol. Microbiol. 54 (2004) 2095-2105
    • (2004) Int. J. Syst. Evol. Microbiol. , vol.54 , pp. 2095-2105
    • Adekambi, T.1    Drancourt, M.2
  • 4
    • 0034879415 scopus 로고    scopus 로고
    • Identification of 54 mycobacterial species by PCR-restriction fragment length polymorphism analysis of the hsp65 gene
    • Brunello F., Ligozzi M., Cristelli E., Bonora S., Tortoli E., and Fontana R. Identification of 54 mycobacterial species by PCR-restriction fragment length polymorphism analysis of the hsp65 gene. J. Clin. Microbiol. 39 (2001) 2799-2806
    • (2001) J. Clin. Microbiol. , vol.39 , pp. 2799-2806
    • Brunello, F.1    Ligozzi, M.2    Cristelli, E.3    Bonora, S.4    Tortoli, E.5    Fontana, R.6
  • 5
    • 0036162066 scopus 로고    scopus 로고
    • Identification of Mycobacterium spp. by using a commercial 16S ribosomal DNA sequencing kit and additional sequencing libraries
    • Cloud J.L., Neal H., Rosenberry R., Turenne C.Y., Jama M., Hllyard D.R., and Carroll K.C. Identification of Mycobacterium spp. by using a commercial 16S ribosomal DNA sequencing kit and additional sequencing libraries. J. Clin. Microbiol. 40 (2002) 400-406
    • (2002) J. Clin. Microbiol. , vol.40 , pp. 400-406
    • Cloud, J.L.1    Neal, H.2    Rosenberry, R.3    Turenne, C.Y.4    Jama, M.5    Hllyard, D.R.6    Carroll, K.C.7
  • 6
    • 0027957345 scopus 로고
    • Molecular phylogeny of the Mycobacterium avium complex
    • Frothingham R., and Wilson K.H. Molecular phylogeny of the Mycobacterium avium complex. J. Infect. Dis. 169 (1994) 305-312
    • (1994) J. Infect. Dis. , vol.169 , pp. 305-312
    • Frothingham, R.1    Wilson, K.H.2
  • 8
    • 0033986599 scopus 로고    scopus 로고
    • Differentiation of phylogenetically related slowly growing mycobacteria by their gyrB sequences
    • Kasai H., Ezaki T., and Harayama S. Differentiation of phylogenetically related slowly growing mycobacteria by their gyrB sequences. J. Clin. Microbiol. 38 (2000) 301-308
    • (2000) J. Clin. Microbiol. , vol.38 , pp. 301-308
    • Kasai, H.1    Ezaki, T.2    Harayama, S.3
  • 10
    • 0027451410 scopus 로고
    • Genotypic identification of mycobacteria by nucleic acid sequence determination: report of a 2-year experience in a clinical laboratory
    • Kirschner P., Springer B., Vogel U., Meier A., Wrede A., Kiekenbeck M., Bange F.-C., and Bottger E.C. Genotypic identification of mycobacteria by nucleic acid sequence determination: report of a 2-year experience in a clinical laboratory. J. Clin. Microbiol. 31 (1993) 2882-2889
    • (1993) J. Clin. Microbiol. , vol.31 , pp. 2882-2889
    • Kirschner, P.1    Springer, B.2    Vogel, U.3    Meier, A.4    Wrede, A.5    Kiekenbeck, M.6    Bange, F.-C.7    Bottger, E.C.8
  • 11
    • 0025799774 scopus 로고
    • Application of colorimetric microdilution plate hybridization for rapid genetic identification of 22 Mycobacteium species
    • Kusunoki S., Ezaki T., Tamesada M., Hatanaka Y., Asano K., Hashimoto Y., and Yabuuchi E. Application of colorimetric microdilution plate hybridization for rapid genetic identification of 22 Mycobacteium species. J. Clin. Microbiol. 29 (1991) 1596-1603
    • (1991) J. Clin. Microbiol. , vol.29 , pp. 1596-1603
    • Kusunoki, S.1    Ezaki, T.2    Tamesada, M.3    Hatanaka, Y.4    Asano, K.5    Hashimoto, Y.6    Yabuuchi, E.7
  • 12
    • 0026533758 scopus 로고
    • Proposal of Mycobacterium peregrinum sp. nov., nom. rev., and elevation of Mycobacterium chelonae subsp. abscessus (Kubica et al.) to species status: Mycobacterium abscessus comb. nov
    • Kusunoki S., and Ezaki T. Proposal of Mycobacterium peregrinum sp. nov., nom. rev., and elevation of Mycobacterium chelonae subsp. abscessus (Kubica et al.) to species status: Mycobacterium abscessus comb. nov. Int. J. Syst. Bacteriol. 42 (1992) 240-245
    • (1992) Int. J. Syst. Bacteriol. , vol.42 , pp. 240-245
    • Kusunoki, S.1    Ezaki, T.2
  • 13
    • 0242577292 scopus 로고    scopus 로고
    • Use of the dnaJ gene for the detection and identification of all Legionella pneumophila serogroups and description of the primers used to detect 16S rRNA gene sequences of major members of the genus Legionella
    • Liu H., Li Y., Huang X., Kawamura Y., and Ezaki T. Use of the dnaJ gene for the detection and identification of all Legionella pneumophila serogroups and description of the primers used to detect 16S rRNA gene sequences of major members of the genus Legionella. Microbiol. Immunol. 47 (2003) 859-869
    • (2003) Microbiol. Immunol. , vol.47 , pp. 859-869
    • Liu, H.1    Li, Y.2    Huang, X.3    Kawamura, Y.4    Ezaki, T.5
  • 14
    • 33751302297 scopus 로고    scopus 로고
    • Mycobacterium kumamotonense sp. nov. recovered from clinical specimen and the first isolation report of Mycobacterium arupense in Japan: novel slowly growing, nonchromogenic clinical isolates related to Mycobacterium terrae complex
    • Masaki T., Ohkusu K., Hata H., Fujiwara N., Iihara H., Yamada-Noda M., Nhung P.H., Hayashi M., Asano Y., Kawamura Y., and Ezaki T. Mycobacterium kumamotonense sp. nov. recovered from clinical specimen and the first isolation report of Mycobacterium arupense in Japan: novel slowly growing, nonchromogenic clinical isolates related to Mycobacterium terrae complex. Microbiol. Immunol. 50 (2006) 889-897
    • (2006) Microbiol. Immunol. , vol.50 , pp. 889-897
    • Masaki, T.1    Ohkusu, K.2    Hata, H.3    Fujiwara, N.4    Iihara, H.5    Yamada-Noda, M.6    Nhung, P.H.7    Hayashi, M.8    Asano, Y.9    Kawamura, Y.10    Ezaki, T.11
  • 15
    • 3142774875 scopus 로고    scopus 로고
    • Assessment of partial sequencing of the 65-kilodalton heal shock protein gene (hsp65) for routine identification of Mycobacterium species isolated from clinical sources
    • McNabb A., Eisler D., Adie K., Amos M., Rodrigues M., Stephens G., Black W.A., and Isaac-Renton J. Assessment of partial sequencing of the 65-kilodalton heal shock protein gene (hsp65) for routine identification of Mycobacterium species isolated from clinical sources. J. Clin. Microbiol. 42 (2004) 3000-3011
    • (2004) J. Clin. Microbiol. , vol.42 , pp. 3000-3011
    • McNabb, A.1    Eisler, D.2    Adie, K.3    Amos, M.4    Rodrigues, M.5    Stephens, G.6    Black, W.A.7    Isaac-Renton, J.8
  • 19
    • 34250697661 scopus 로고    scopus 로고
    • Novel phylogenetic marker dnaJ and DNA-DNA hybridization for clarifying interrelationships among the genus Aeromonas
    • Nhung P.H., Hata H., Ohkusu K., Noda M., Shah M.M., Goto K., and Ezaki T. Novel phylogenetic marker dnaJ and DNA-DNA hybridization for clarifying interrelationships among the genus Aeromonas. Int. J. Syst. Evol. Microbiol. 57 (2007) 1232-1237
    • (2007) Int. J. Syst. Evol. Microbiol. , vol.57 , pp. 1232-1237
    • Nhung, P.H.1    Hata, H.2    Ohkusu, K.3    Noda, M.4    Shah, M.M.5    Goto, K.6    Ezaki, T.7
  • 20
    • 0033827636 scopus 로고    scopus 로고
    • Differentiation of clinical Mycrobacterium tuberculosis complex isolates by gyrB DNA sequence polymorphism analysis
    • Niemann S., Harmsen D., Rusch-Gerdes S., and Richter E. Differentiation of clinical Mycrobacterium tuberculosis complex isolates by gyrB DNA sequence polymorphism analysis. J. Clin. Microbiol. 38 (2000) 3231-32347
    • (2000) J. Clin. Microbiol. , vol.38 , pp. 3231-32347
    • Niemann, S.1    Harmsen, D.2    Rusch-Gerdes, S.3    Richter, E.4
  • 21
    • 0030203863 scopus 로고    scopus 로고
    • TREEVIEW: an application to displayphylogenetic trees on personal computers
    • Page R.D.M. TREEVIEW: an application to displayphylogenetic trees on personal computers. Comp. Appl. Biosci. 12 (1996) 357-358
    • (1996) Comp. Appl. Biosci. , vol.12 , pp. 357-358
    • Page, R.D.M.1
  • 24
    • 0031974203 scopus 로고    scopus 로고
    • Differentiation of phylogenetically related slowly growing mycrobacteria based on 16S-23S rRNA gene internal transcribed spacer sequences
    • Roth A., Fischer M., Hamid M.E., Michalke S., Ludwig W., and Mauch H. Differentiation of phylogenetically related slowly growing mycrobacteria based on 16S-23S rRNA gene internal transcribed spacer sequences. J. Clin. Microbiol. 36 (1998) 139-147
    • (1998) J. Clin. Microbiol. , vol.36 , pp. 139-147
    • Roth, A.1    Fischer, M.2    Hamid, M.E.3    Michalke, S.4    Ludwig, W.5    Mauch, H.6
  • 25
    • 0034049470 scopus 로고    scopus 로고
    • Novel diagnostic algorithm for identification of mycobacteria using genus-specific amplification of the 16S-23S rRNA gene spacer and restriction endonucleases
    • Roth A., Reischl U., Streubel A., Naumann L., Kroppenstedt R.M., Habicht M., Fischer M., and Mauch H. Novel diagnostic algorithm for identification of mycobacteria using genus-specific amplification of the 16S-23S rRNA gene spacer and restriction endonucleases. J. Clin. Microbiol. 38 (2000) 1094-1104
    • (2000) J. Clin. Microbiol. , vol.38 , pp. 1094-1104
    • Roth, A.1    Reischl, U.2    Streubel, A.3    Naumann, L.4    Kroppenstedt, R.M.5    Habicht, M.6    Fischer, M.7    Mauch, H.8
  • 27
    • 0030046515 scopus 로고    scopus 로고
    • Two-laboratory collaborative study on identification of mycobacteria: molecular versus phenotypic methods
    • Springer B., Stockman L., Teschner K., Roberts G.D., and Bottger E.C. Two-laboratory collaborative study on identification of mycobacteria: molecular versus phenotypic methods. J. Clin. Microbiol. 34 (1996) 296-303
    • (1996) J. Clin. Microbiol. , vol.34 , pp. 296-303
    • Springer, B.1    Stockman, L.2    Teschner, K.3    Roberts, G.D.4    Bottger, E.C.5
  • 28
    • 3042708984 scopus 로고    scopus 로고
    • Analysis of the function of mycobacterial DnaJ proteins by overexpression and microarray profiling
    • Stewart G.R., Robertson B.D., and Young D.B. Analysis of the function of mycobacterial DnaJ proteins by overexpression and microarray profiling. Tuberculosis 84 (2004) 180-187
    • (2004) Tuberculosis , vol.84 , pp. 180-187
    • Stewart, G.R.1    Robertson, B.D.2    Young, D.B.3
  • 29
    • 0030968531 scopus 로고    scopus 로고
    • Subspecific differentiation of Mycobacterium avium complex strains by automated sequencing of a region of the gene (hsp65) encoding a 65-Kilodalton heat shock protein
    • Swanson D.S., Kapur V., Dtockbauer K., Pan X., Fronthingham R., and Musser J.M. Subspecific differentiation of Mycobacterium avium complex strains by automated sequencing of a region of the gene (hsp65) encoding a 65-Kilodalton heat shock protein. Int. J. Syst. Evol. Microbiol. 47 (1997) 414-419
    • (1997) Int. J. Syst. Evol. Microbiol. , vol.47 , pp. 414-419
    • Swanson, D.S.1    Kapur, V.2    Dtockbauer, K.3    Pan, X.4    Fronthingham, R.5    Musser, J.M.6
  • 30
    • 0027498480 scopus 로고
    • Genus-specific polymerase chain reaction for the mycobacterial dnaJ gene and species-specific oligonucleotide probes
    • Takewaki S., Okuzumi K., Ishiko H., Nakahara K., Ohkubo S., and Nagai R. Genus-specific polymerase chain reaction for the mycobacterial dnaJ gene and species-specific oligonucleotide probes. J. Clin. Microbiol. 31 (1993) 446-450
    • (1993) J. Clin. Microbiol. , vol.31 , pp. 446-450
    • Takewaki, S.1    Okuzumi, K.2    Ishiko, H.3    Nakahara, K.4    Ohkubo, S.5    Nagai, R.6
  • 31
    • 0027300248 scopus 로고
    • Isolation of specific DNA fragments of Mycobacterium avium and their possible use in diagnosis
    • Thierry D., Vincent V., Clement F., and Guesdon J.L. Isolation of specific DNA fragments of Mycobacterium avium and their possible use in diagnosis. J. Clin. Microbiol. 31 (1993) 1048-1054
    • (1993) J. Clin. Microbiol. , vol.31 , pp. 1048-1054
    • Thierry, D.1    Vincent, V.2    Clement, F.3    Guesdon, J.L.4
  • 34
    • 0000251606 scopus 로고
    • The Mycobacteriaceae
    • Sneath P.H.A., Mair N.S., Sharpe M.E., and Holt J.G. (Eds), Williams and Wilkins, Baltimore
    • Wayne L.G., and Kubica G.P. The Mycobacteriaceae. In: Sneath P.H.A., Mair N.S., Sharpe M.E., and Holt J.G. (Eds). Bergey's Manual of Systematic Bacteriology vol. 2 (1986), Williams and Wilkins, Baltimore 1436-1457
    • (1986) Bergey's Manual of Systematic Bacteriology , vol.2 , pp. 1436-1457
    • Wayne, L.G.1    Kubica, G.P.2
  • 35
    • 0027496647 scopus 로고
    • Isolation of a DNA probe for identification of Mycobacterium kansasii, including the genetic subgroup
    • Yang M., Ross B.C., and Dwyer B. Isolation of a DNA probe for identification of Mycobacterium kansasii, including the genetic subgroup. J. Clin. Microbiol. 31 (1993) 2769-2772
    • (1993) J. Clin. Microbiol. , vol.31 , pp. 2769-2772
    • Yang, M.1    Ross, B.C.2    Dwyer, B.3


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