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Volumn 11, Issue 4, 2007, Pages 376-385

Management and analysis of genomic functional and phenotypic controlled annotations to support biomedical investigation and practice

Author keywords

Biomedical ontologies; Data mining and knowledge discovery; Genomic and biomedical databases; Genomic data management and statistical analysis

Indexed keywords

DATA MINING; DATABASE SYSTEMS; GENES; INFORMATION MANAGEMENT; MOLECULAR BIOLOGY; ONTOLOGY; STATISTICAL METHODS;

EID: 34547127151     PISSN: 10897771     EISSN: None     Source Type: Journal    
DOI: 10.1109/TITB.2006.884367     Document Type: Article
Times cited : (13)

References (43)
  • 1
    • 33846088142 scopus 로고    scopus 로고
    • M.Y.Galperin, The molecular biology database collection: 2006 update, Nucleic Acids Res., 34, Database issue, pp. D3-D5, 2006.
    • M.Y.Galperin, "The molecular biology database collection: 2006 update," Nucleic Acids Res., vol. 34, Database issue, pp. D3-D5, 2006.
  • 2
    • 0035819474 scopus 로고    scopus 로고
    • Implications of the Human Genome Project for medical science
    • F. S. Collins and V. A. McKusick, "Implications of the Human Genome Project for medical science," JAMA, vol. 285, no. 5, pp. 540-544, 2001.
    • (2001) JAMA , vol.285 , Issue.5 , pp. 540-544
    • Collins, F.S.1    McKusick, V.A.2
  • 4
    • 0242412914 scopus 로고    scopus 로고
    • Bioinformatics and medical informatics: Collaborations on the road to genomic medicine
    • Nov.-Dec
    • V. Maojo and C. A. Kulikowski, "Bioinformatics and medical informatics: Collaborations on the road to genomic medicine," J. Amer. Med. Inform. Assoc., vol. 10, no. 6, pp. 515-22, Nov.-Dec. 2003.
    • (2003) J. Amer. Med. Inform. Assoc , vol.10 , Issue.6 , pp. 515-522
    • Maojo, V.1    Kulikowski, C.A.2
  • 5
    • 0037370478 scopus 로고    scopus 로고
    • Bioinformatics in the post-sequence era
    • M. Kanehisa and P. Bork, "Bioinformatics in the post-sequence era," Nat. Genet., vol. 33, pp. S305-S310, 2003.
    • (2003) Nat. Genet , vol.33
    • Kanehisa, M.1    Bork, P.2
  • 6
    • 2942513130 scopus 로고    scopus 로고
    • Bioinformatics strategies for translating genome-wide expression analyses into clinically useful cancer markers
    • D.R. Rhode and A.M. Chinnaiyan, "Bioinformatics strategies for translating genome-wide expression analyses into clinically useful cancer markers," Ann. N. Y. Acad. Sci., vol. 1020, pp. 32-40, 2004.
    • (2004) Ann. N. Y. Acad. Sci , vol.1020 , pp. 32-40
    • Rhode, D.R.1    Chinnaiyan, A.M.2
  • 7
    • 0036457362 scopus 로고    scopus 로고
    • Ontologies for molecular biology and bioinformatics
    • S. Schulze-Kremer, "Ontologies for molecular biology and bioinformatics," In Silico Biol., vol. 2, no. 3, pp. 179-193, 2002.
    • (2002) In Silico Biol , vol.2 , Issue.3 , pp. 179-193
    • Schulze-Kremer, S.1
  • 8
    • 0034332545 scopus 로고    scopus 로고
    • Ontology-based knowledge representation for bioinformatics
    • R. Stevens, C. A. Goble, and S. Bechhofer, "Ontology-based knowledge representation for bioinformatics," Briefs Bioinform., vol. 1, pp. 398-414, 2000.
    • (2000) Briefs Bioinform , vol.1 , pp. 398-414
    • Stevens, R.1    Goble, C.A.2    Bechhofer, S.3
  • 9
    • 0034069495 scopus 로고    scopus 로고
    • Gene Ontology: Tool for the unification of biology
    • The Gene Ontology Consortium
    • The Gene Ontology Consortium, "Gene Ontology: Tool for the unification of biology," Nat. Genet., vol. 25, pp. 25-29, 2000.
    • (2000) Nat. Genet , vol.25 , pp. 25-29
  • 11
    • 0030925920 scopus 로고    scopus 로고
    • Pfam: A comprehensive database of protein domain families based on seed alignments
    • E. L. L. Sonnhammer, S. R. Eddy, and R.Durbin, "Pfam: A comprehensive database of protein domain families based on seed alignments," Proteins, vol. 28, pp. 405-420, 1997.
    • (1997) Proteins , vol.28 , pp. 405-420
    • Sonnhammer, E.L.L.1    Eddy, S.R.2    Durbin, R.3
  • 12
    • 13444282474 scopus 로고    scopus 로고
    • N. J. Mulder, R. Apweiler, T. K. Attwood, A. Bairoch, A. Bateman, D. Binns, P. Bradley, P. Bork, P. Bucher, L. Cerutti, R. Copley, E. Courcelle, U. Das, R. Durbin, W. Fleischmann, J. Gough, D. Haft, N. Harte, N. Hulo, D. Kahn, A. Kanapin, M. Krestyaninova, D. Lonsdale, R. Lopez, I. Letunic, M. Madera, J. Maslen, J. McDowall, A. Mitchell, A. N. Nikolskaya, S. Orchard, M. Pagni, C. P. Ponting, E. Quevillon, J. Selengut, C. J. Sigrist, V. Silventoinen, D. J. Studholme, R. Vaughan, and C. H. Wu, InterPro, progress and status in 2005, Nucleic Acids Res., 33, Database issue, pp. D201-D205, Jan. 2005.
    • N. J. Mulder, R. Apweiler, T. K. Attwood, A. Bairoch, A. Bateman, D. Binns, P. Bradley, P. Bork, P. Bucher, L. Cerutti, R. Copley, E. Courcelle, U. Das, R. Durbin, W. Fleischmann, J. Gough, D. Haft, N. Harte, N. Hulo, D. Kahn, A. Kanapin, M. Krestyaninova, D. Lonsdale, R. Lopez, I. Letunic, M. Madera, J. Maslen, J. McDowall, A. Mitchell, A. N. Nikolskaya, S. Orchard, M. Pagni, C. P. Ponting, E. Quevillon, J. Selengut, C. J. Sigrist, V. Silventoinen, D. J. Studholme, R. Vaughan, and C. H. Wu, "InterPro, progress and status in 2005," Nucleic Acids Res., vol. 33, Database issue, pp. D201-D205, Jan. 2005.
  • 13
    • 0033982936 scopus 로고    scopus 로고
    • KEGG: Kyoto Encyclopedia of Genes and Genomes
    • M. Kanehisa and S. Goto, "KEGG: Kyoto Encyclopedia of Genes and Genomes," Nucleic Acids Res., vol. 28, no. 1, pp. 27-30, 2000.
    • (2000) Nucleic Acids Res , vol.28 , Issue.1 , pp. 27-30
    • Kanehisa, M.1    Goto, S.2
  • 15
    • 34547107746 scopus 로고    scopus 로고
    • College of American Pathologists, Online. Available
    • College of American Pathologists. (2005). Systematized nomenclature of medicine, Online. Available: http://www.snomed.org/index.html
    • (2005) Systematized nomenclature of medicine
  • 16
    • 0025312477 scopus 로고
    • The Unified Medical Language System (UMLS) of the National Library of Medicine
    • May
    • C. Lindberg, "The Unified Medical Language System (UMLS) of the National Library of Medicine," J. Amer. Med. Rec. Assoc., vol. 61, no. 5, pp. 40-42, May 1990.
    • (1990) J. Amer. Med. Rec. Assoc , vol.61 , Issue.5 , pp. 40-42
    • Lindberg, C.1
  • 17
    • 0004234233 scopus 로고    scopus 로고
    • U. S. National Library of Medicine, Online. Available
    • U. S. National Library of Medicine. (2005). Medical subject headings Online. Available: http://www.nlm.nih.gov/mesh/meshhome.html
    • (2005) Medical subject headings
  • 18
    • 26844450908 scopus 로고    scopus 로고
    • The Mammalian Phenotype Ontology as a tool for annotating, analyzing and comparing phenotypic information
    • C. L. Smith, C.A. Goldsmith, and J. T. Eppig, "The Mammalian Phenotype Ontology as a tool for annotating, analyzing and comparing phenotypic information," Genome Biol., vol. 6, no. 1, p. R7, 2005.
    • (2005) Genome Biol , vol.6 , Issue.1
    • Smith, C.L.1    Goldsmith, C.A.2    Eppig, J.T.3
  • 19
    • 0033599012 scopus 로고    scopus 로고
    • The breast cancer gene database: A collaborative information resource
    • R. A. Baasiri, S. R. Glasser, D. L. Steffen, and D. A.Wheeler, "The breast cancer gene database: A collaborative information resource," Oncogene, vol. 18, no. 56, pp. 7958-7965, 1999.
    • (1999) Oncogene , vol.18 , Issue.56 , pp. 7958-7965
    • Baasiri, R.A.1    Glasser, S.R.2    Steffen, D.L.3    Wheeler, D.A.4
  • 20
    • 0033753684 scopus 로고    scopus 로고
    • Digital reviews in molecular biology: Approaches to structured digital publication
    • D. L. Steffen, A. E. Levine, S. Yarus, R. A. Baasiri, and D. A. Wheeler, "Digital reviews in molecular biology: Approaches to structured digital publication," Bioinformatics, vol. 16, no. 7, pp. 639-649, 2000.
    • (2000) Bioinformatics , vol.16 , Issue.7 , pp. 639-649
    • Steffen, D.L.1    Levine, A.E.2    Yarus, S.3    Baasiri, R.A.4    Wheeler, D.A.5
  • 23
    • 13444266370 scopus 로고    scopus 로고
    • A. Hamosh, A. F. Scott, J. S. Amberger, C. A. Bocchini, and V. A. McKusick, Online Mendelian Inheritance in Man (OMIM), a knowledgebase of human genes and genetic disorders, Nucleic Acids Res., 33, Database issue, pp. D514-D517, 2005.
    • A. Hamosh, A. F. Scott, J. S. Amberger, C. A. Bocchini, and V. A. McKusick, "Online Mendelian Inheritance in Man (OMIM), a knowledgebase of human genes and genetic disorders," Nucleic Acids Res., vol. 33, Database issue, pp. D514-D517, 2005.
  • 25
    • 21444445084 scopus 로고    scopus 로고
    • F. Al Shahrour, P. Minguez, J. M. Vaquerizas, L. Conde, and J. Dopazo, Babelomics: A suite of web-tools for functional annotation and analysis of group of genes in high-throughput experiments, Nucleic Acids Res., 33, Web Server issue, pp. W460-W464, 2005.
    • F. Al Shahrour, P. Minguez, J. M. Vaquerizas, L. Conde, and J. Dopazo, "Babelomics: A suite of web-tools for functional annotation and analysis of group of genes in high-throughput experiments," Nucleic Acids Res., vol. 33, Web Server issue, pp. W460-W464, 2005.
  • 26
    • 23144455923 scopus 로고    scopus 로고
    • P. Khatri, S. Sellamuthu, P. Malhotra, K. Amin, A. Done, and S. Draghici, Recent additions and improvements to the Onto-Tools, Nucleic Acids Res., 33, Web Server issue, pp. W762-W765, 2005.
    • P. Khatri, S. Sellamuthu, P. Malhotra, K. Amin, A. Done, and S. Draghici, "Recent additions and improvements to the Onto-Tools," Nucleic Acids Res., vol. 33, Web Server issue, pp. W762-W765, 2005.
  • 27
    • 13444272087 scopus 로고    scopus 로고
    • D. Maglott, J. Ostell, K. D. Pruitt, and T. Tatusova, Entrez Gene: Gene-centered information at NCBI, Nucleic Acids Res., 33, Database issue, pp. D54-D58, 2005.
    • D. Maglott, J. Ostell, K. D. Pruitt, and T. Tatusova, "Entrez Gene: Gene-centered information at NCBI," Nucleic Acids Res., vol. 33, Database issue, pp. D54-D58, 2005.
  • 28
    • 9144232912 scopus 로고    scopus 로고
    • R. Apweiler,A. Bairoch, C. H. Wu, W. C. Barker, B. Boeckmann, S. Ferro, E. Gasteiger, H. Huang, R. Lopez, M. Magrane, M. J. Martin, D. A. Natale, C. O'Donovan, N. Redaschi, and L. S. Yeh, UniProt: The Universal Protein knowledgebase, Nucleic Acids Res., 32, Database issue, pp. D115-D119, 2004.
    • R. Apweiler,A. Bairoch, C. H. Wu, W. C. Barker, B. Boeckmann, S. Ferro, E. Gasteiger, H. Huang, R. Lopez, M. Magrane, M. J. Martin, D. A. Natale, C. O'Donovan, N. Redaschi, and L. S. Yeh, "UniProt: The Universal Protein knowledgebase," Nucleic Acids Res., vol. 32, Database issue, pp. D115-D119, 2004.
  • 30
    • 34547118000 scopus 로고    scopus 로고
    • Data Structures With Java
    • NJ: Prentice Hall
    • J. R. Hubbard and A. Huray, Data Structures With Java. Old Tappan, NJ: Prentice Hall, 2003.
    • (2003) Old Tappan
    • Hubbard, J.R.1    Huray, A.2
  • 34
    • 0001677717 scopus 로고
    • Controlling the False Discovery Rate: A practical and powerful approach to multiple testing
    • Y. Benjamin and Y. Hochberg, "Controlling the False Discovery Rate: A practical and powerful approach to multiple testing," J. R. Stat. Soc., vol. 57, pp. 289-300, 1995.
    • (1995) J. R. Stat. Soc , vol.57 , pp. 289-300
    • Benjamin, Y.1    Hochberg, Y.2
  • 35
    • 0038128172 scopus 로고    scopus 로고
    • Diabetes gene therapy: Potential and challenges
    • R. Xu, H. Li, L. Y. Tse, H. F. Kung, H. Lu, and K. S. Lam, "Diabetes gene therapy: Potential and challenges," Curr. Gene Ther., vol. 3, pp. 65-82, 2003.
    • (2003) Curr. Gene Ther , vol.3 , pp. 65-82
    • Xu, R.1    Li, H.2    Tse, L.Y.3    Kung, H.F.4    Lu, H.5    Lam, K.S.6
  • 36
    • 3442884258 scopus 로고    scopus 로고
    • Molecular and cellular basis of the aetiology and management of diabetic cardiomyopathy: A short review
    • E. Adeghate, "Molecular and cellular basis of the aetiology and management of diabetic cardiomyopathy: A short review," Mol. Cell Biochem., vol. 261, pp. 187-191, 2004.
    • (2004) Mol. Cell Biochem , vol.261 , pp. 187-191
    • Adeghate, E.1
  • 37
    • 0030768929 scopus 로고    scopus 로고
    • Genetics of Parkinson's disease
    • R. L. Nussbaum and M. H. Polymeropoulos, "Genetics of Parkinson's disease," Hum. Mol. Genet., vol. 6, no. 10, pp. 1687-1691, 1997.
    • (1997) Hum. Mol. Genet , vol.6 , Issue.10 , pp. 1687-1691
    • Nussbaum, R.L.1    Polymeropoulos, M.H.2
  • 38
    • 17844365594 scopus 로고    scopus 로고
    • Genetics of Parkinson's disease
    • H. R. Morris, "Genetics of Parkinson's disease," Ann. Med., vol. 37, no. 2, pp. 86-96, 2005.
    • (2005) Ann. Med , vol.37 , Issue.2 , pp. 86-96
    • Morris, H.R.1
  • 39
    • 0033753842 scopus 로고    scopus 로고
    • Transcriptional regulation of Alzheimer's disease genes: Implications for susceptibility
    • J. Theuns and C. Van Broeckhoven, "Transcriptional regulation of Alzheimer's disease genes: Implications for susceptibility," Hum. Mol. Genet., vol. 9, pp. 2383-2394, 2000.
    • (2000) Hum. Mol. Genet , vol.9 , pp. 2383-2394
    • Theuns, J.1    Van Broeckhoven, C.2
  • 40
    • 0037417254 scopus 로고    scopus 로고
    • Alzheimer's disease and Parkinson's disease
    • Apr
    • R. L. Nussbaum and C. E. Ellis, "Alzheimer's disease and Parkinson's disease," N. Engl. J. Med., vol. 348, no. 14, pp. 1356-1364, Apr. 2003.
    • (2003) N. Engl. J. Med , vol.348 , Issue.14 , pp. 1356-1364
    • Nussbaum, R.L.1    Ellis, C.E.2
  • 41
    • 20444504698 scopus 로고    scopus 로고
    • The genetic epidemiology of neurodegenerative disease
    • Jun
    • L. Bertram and R. E. Tanzi, "The genetic epidemiology of neurodegenerative disease," J. Clin. Invest., vol. 115, no. 6, pp. 1449-1457, Jun. 2005.
    • (2005) J. Clin. Invest , vol.115 , Issue.6 , pp. 1449-1457
    • Bertram, L.1    Tanzi, R.E.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.