Nuclear and cytoplasmic microsatellite markers for the species of the Dilatata group of Paspalum (Poaceae)

Plant Genetic Resources: Characterisation and Utilisation

Volumn 5, Issue 1, 2007, Pages 14-26

  Speranza, Pablo ^a   Malosetti, Marcos ^a,b  

^a UNIVERSIDAD DE LA REPÚBLICA   (Uruguay)

^b WAGENINGEN UNIVERSITY   (Netherlands)

Author keywords

Apomixis; Chloroplast microsatellites; Microsatellites (SSR); Paspalum dilatatum; Paspalum urvillei; Polyploidy

Indexed keywords

PASPALUM; PASPALUM DASYPLEURUM; PASPALUM DILATATUM; PASPALUM URVILLEI; POACEAE; TETRA;

EID: 34447540164     PISSN: 14792621     EISSN: 1479263X     Source Type: Journal    
DOI: 10.1017/S1479262107192145     Document Type: Article

References (45)

1. Amos W, Sawcer SJ, Feakes RW and Rubinsztein DC (1996) Microsatellites show mutational bias and heterozygote instability. Nature Genetics 13: 390-391.
2. Bashaw EC and Forbes I Jr (1958) Chromosome numbers and microsporogenesis in Dallisgrass Paspalum dilatatum Poir. Agronomy Journal 50: 441-445.
3. Bashaw EC and Holt EC (1958) Megasporogenesis, embryo sac development and embryogenesis in Dallisgrass, Paspalum dilatatum Poir. Agronomy Journal 50: 753-756.
4. Boutin-Garnache I, Raposo M, Raymond M and Deschepper CF (2001) M13-Tailed primers improve the readability and usability of microsatellite analyses performed with two different allele-sizing methods. Biotechniques 31: 24-26.
5. Burson BL (1979) Cytogenetics of Paspalum urvillei x P. intermedium and P. dilatatum x P. paniculatum hybrids. Crop Science 19: 534-538.
6. Burson BL (1983) Phylogenetic investigations of Paspalum dilatatum and related species. In: Proceedings of the XIV International Grasslands Congress. Boulder, CO: Westview Press, pp. 170-173.
7. Burson BL (1991a) Genome relationships between tetraploid and hexaploid biotypes of dallisgrass, Paspalum dilatatum. Botanical Gazzette 152: 219-223.
8. Burson BL (1991b) Homology of chromosomes of the X genomes in common Uruguayan dallisgrass, Paspalum dilatatum. Genome 34: 950-953.
9. Burson BL (1992) Cytology and reproductive behavior of hybrids between Paspalum urvillei and two hexaploid P. dilatatum biotypes. Genome 35: 1002-1006.
10. Burson BL, Lee H and Bennett EC (1973) Genome relations between tetraploid Paspalum dilatatum and four diploid Paspalum species. Crop Science 13: 139-143.
11. Caponio I and Quarín CL (1990) Intra- and interspecific hybridization between dallisgrass and vaseygrass. Crop Science 30: 362-364.
12. Casa AM, Mitchel SE, Lopes CR and Valls JFM (2002) RAPD analysis reveals genetic variability among sexual and apomictic Paspalum dilatatum Poiret biotypes. Journal of Heredity 93: 300-302.
13. Chen X, Cho YG and McCouch SR (2002) Sequence divergence of rice microsatellites in Oryza and other plant species. Molecular Genetics and Genomics 268: 331-343.
14. Ellegren H, Primmer CR and Sheldon BC (1995) Microsatellite 'evolution': directionality or bias? Nature Genetics 11: 360-362.
15. Elsik CG and Williams CG (2001) Families of clustered microsatellites in a conifer genome. Molecular Genetics and Genomics 265: 535-542.
16. Ernst JA, Branch C, Clarck AM and Hokit DG (2004) Polymorphic microsatellite markers for the Florida scrub lizard (Sceloporus woodi). Molecular Ecology Notes 4: 364-365.
17. Fischer D and Bachmann K (1998) Microsatellite enrichment in organisms with large genomes (Allium cepa L.). Biotechniques 24: 796-802.
18. Hazen SP, Leroy P and Ward RW (2002) AFLP in Triticum aestivum L.: patterns of genetic diversity and genome distribution. Euphytica 125: 89-102.
19. Hickenbick MCM, Flores AIP, Cavalli-Molina S, Weber LH, Kersting ACO, Costa LS, Souza-Chies TT and Albarus MH (1992) Mode of reproduction and seed production in Paspalum dilatatum Poir. Virasoro biotype-Dilatata group (Gramineae). Revista Brasileira de Genética 15: 85-102.
20. Hite JM, Eckert KA and Cheng KC (1996) Factors affecting fidelity of DNA synthesis during PCR amplification of d(C-A)n. D(G-T)n microsatellite repeats. Nucleic Acids Research 24: 2429-2434.
21. Ishii T and McCouch SR (2000) Microsatellites and microsynteny in the chloroplast genomes of Oryza and eight other Gramineae species. Theoretical and Applied Genetics 100: 1257-1266.
22. Jakše J and Javornik B (2001) High throughput isolation of microsatellites in hop (Humulus lupulus L.). Plant Molecular Biology Reports 19: 217-226.
23. Kandpal RP, Kandpal G and Weissman SM (1994) Construction of libraries enriched for sequence repeats and jumping clones, and hybridization selection for region-specific markers. Proceedings of the National Academy of Sciences of the USA 91: 88-92.
24. Kijas JMH, Fowler JCS, Garbett CA and Thomas MR (1994) Enrichment of microsatellites from the citrus genome using biotinylated oligonucleotide sequences bound to streptavidin-coated magnetic particles. Biotechniques 16: 657-660.
25. Kim HS and Ward RW (2000) Patterns of RFLP-based genetic diversity in germplasm pools of common wheat with different geographical or breeding program origins. Euphytica 115: 197-208.
26. Machado ACC, Valls JFM, Peñaloza APS and dos Santos S (2005) Novos biótipos pentaplóides do grupo Dilatata de Paspalum L. (Gramineae) no Sul do Brasil 1. Ciência Rural 35: 56-61.
27. Moraes Fernandes MIB, Barreto IL and Salzano FM (1968) Cytogenetic, ecologic and morphologic studies in Brazilian forms of Paspalum dilatatum. Canadian Journal of Genetics and Cytology 10: 131-138.
28. Pereira J, Sabbia V, Fajardo A and Speranza PR (2000) Análisis genéticos en gramíneas nativas del género Paspalum a partir de datos isoenzimáticos y RAPD. Agrociencia 4(1): 1-11.
29. Provan J, Biss PM, McMeel D and Mathews S (2004) Universal primers for the amplification of chloroplast microsatellites in grasses (Poaceae). Molecular Ecology Notes 4: 262-264.
30. Quarín CL and Caponio I (1995) Cytogenetics and reproduction on P. dasypleurum and its hybrids with P. urvillei and P. dilatatum ssp. flavescens. International Journal of Plant Sciences 156: 232-235.
31. Röder MS, Plaschke J, König S, Börner A, Sorrells ME, Tanksley SD and Ganal MW (1995) Abundance, variability and chromosomal location of microsatellites in wheat. Molecular and General Genetics 246: 327-333.
32. Rozen S and Skaletsky HJ (2000) Primer3 on the WWW for general users and for biologist programmers. In: Krawetz S and Misener S (eds) Bioinformatics Methods and Protocols: Methods in Molecular Biology. Totowa, NJ: Humana Press, pp. 365-386.
33. Schlöterer C (2000) Evolutionary dynamics of microsatellite DNA. Chromosoma 109: 365-371.
34. Schmidt T and Heslop-Harrison JS (1996) The physical and genomic organization of microsatellites in sugar beet. Proceedings of the National Academy of Sciences of the USA 93: 8761-8765.
35. Sourdille P, Tavaud M, Charmet G and Bernard M (2001) Transferability of wheat microsatellites to diploid Triticeae species carrying the A, B and D genomes. Theoretical and Applied Genetics 103: 346-352.
36. Speranza P, Vaio M and Mazzella C (2003) Karyotypes of two cytotypes of Paspalum quadrifarium Lam. (Poaceae). An alternative technique for small chromosomes in plants. Genetics and Molecular Biology 26: 499-503.
37. Symonds VV and Lloyd AM (2003) An analysis of microsatellite loci in Arabidopsis thaliana: mutational dynamics and application. Genetics 165: 1475-1488.
38. Taberlet P, Gelly L, Pavtou G and Bouvet J (1991) Universal primers for amplification of three non-coding regions of chloroplast DNA. Plant Molecular Biology 17: 1105-1109.
39. Temnykh S, Park WD, Ayres N, Cartinhour S, Hauck N, Lopovich L, Cho YG, Ishii T and McCouch SR (2000) Mapping and genome organization of microsatellite sequences in rice (Oryza sativa L.). Theoretical and Applied Genetics 100: 697-712.
40. Temnykh S, DeClerck G, Lukashova A, Lipovich L, Cartinhour S and McCouch S (2001) Computational and experimental analysis of microsatellites in rice (Oryza sativa L.): frequency, length variation, transposon associations, and genetic marker potential. Genome Research 11: 1441-1452.
41. Vaio M, Speranza P, Valls JF, Guerra M and Mazzella C (2005) Localization of the 5S and 45S rDNA sites and cpDNA sequence analysis in species of the Quadrifaria group of Paspalum (Poaceae, Paniceae). Annals of Botany 96: 191-200.
42. Valls JFM and Pozzobon M (1987) Variacão apresentada pelos principais grupos taxonômicos de Paspalum com interesse forrageiro no Brasil. Encontro Internacional sobre Melhoramiento Genético de Paspalum. Anais. Nova Odessa, SP, Brazil: Instituto de Zootecnia, pp. 15-21.
43. Van Ooijen JW and Voorrips RE (2001) JoinMap® Version 3.0: Software for the Calculation of Genetic Linkage Maps. Wageningen: Plant Research International.
44. Vigouroux Y, Jaqueth JS, Matsuoka Y, Smith OS, Beavis WD, Smith JSC and Doebley J (2002) Rate and pattern of mutation at microsatellite loci in maize. Molecular Biology and Evolution 19: 1251-1260.
45. Weber JL (1990) Informativeness of human (dC-dA)n·(dG-dT)n polymorphisms. Genomics 7: 524-530.