Exploiting a list of protein sequences

Gene

Volumn 398, Issue 1-2 SPEC. ISS., 2007, Pages 35-41

  Marden, Michael C ^e   Dewilde, Sylvia ^b   Kiger, Laurent ^a   Hamdane, Djemel ^a   Uzan, Julien ^a   Burmester, Thorsten ^c   Hankeln, Thomas ^d   Moens, Luc ^b   Baudin Creuza, Véronique ^a   Celier, Chantal ^a   Wajcman, Henri ^a  

^a INSERM   (France)

^b UNIVERSITY OF ANTWERP   (Belgium)

^c UNIVERSITY OF HAMBURG   (Germany)

^d JOHANNES GUTENBERG UNIVERSITY   (Germany)

^e Inserm U841 ^*

Author keywords

[No Author keywords available]

Indexed keywords

HEMOGLOBIN;

AMINO ACID SEQUENCE; ANALYTIC METHOD; ARTICLE; COMPUTER PROGRAM; DATA BASE; HUMAN; PRIORITY JOURNAL; PROBABILITY; PROTEIN ENGINEERING; SEQUENCE ANALYSIS; THREE DIMENSIONAL IMAGING;

AMINO ACID SEQUENCE; AMINO ACIDS; ANIMALS; COMPUTER GRAPHICS; DATABASES, PROTEIN; HEMOGLOBINS; HUMANS; MODELS, MOLECULAR; MUTATION; PROTEIN CONFORMATION; PROTEIN STRUCTURE, TERTIARY; SOFTWARE;

EID: 34447527074     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.gene.2007.01.036     Document Type: Article

References (11)

1. Burmester T., Weich B., Reinhardt S., and Hankeln T. A vertebrate globin expressed in the brain. Nature 407 (2000) 520-523
2. Burmester T., Ebner B., Weich B., and Hankeln T. Cytoglobin: a novel globin type ubiquitously expressed in vertebrate tissues. Mol. Biol. Evol. 19 (2002) 416-421
3. Dewilde S., et al. Biochemical characterization and ligand binding properties of neuroglobin, a novel member of the globin family. J. Biol. Chem. 276 (2001) 38949-38955
4. Feng L., et al. Molecular mechanism of AHSP-mediated stabilization of alpha-hemoglobin. Cell 119 (2004) 629-640
5. Hamdane D., et al. The redox state of the cell regulates the ligand binding affinity of human neuroglobin and cytoglobin. J. Biol. Chem. 278 (2003) 51713-51721
6. Hardison R.C., et al. HbVar: A relational database of human hemoglobin variants and thalassemia mutations at the globin gene server. Human Mutat. 19 (2002) 225-233
7. Kapp O.H., Moens L., Vanfleteren J., Trotman C.N., Suzuki T., and Vinogradov S.N. Alignment of 700 globin sequences: extent of amino acid substitution and its correlation with variation in volume. Protein Sci. 4 (1995) 2179-2190
8. Pesce A., et al. Human brain neuroglobin structure reveals a distinct mode of controlling oxygen affinity. Structure (Camb) 11 (2003) 1087-1095
9. Phan I.Q., Pilbout S.F., Fleischmann W., and Bairoch A. NEWT, a new taxonomy portal. Nucleic Acids Res. 31 (2003) 3822-3823
10. Vasseur-Godbillon C., Marden M.C., Giordano P., Wajcman H., and Baudin-Creuza V. Impaired binding of AHSP to alpha chain variants: Hb Groene Hart illustrates a mechanism leading to unstable hemoglobins with alpha thalassemic like syndrome. Blood Cells Mol. Diseases 37 (2006) 173-179
11. Weblinks: Protein families: http://pfam.wustl.edu/; Protein sequences: PIR: http://pir.georgetown.edu/home.shtml; ExPASy:http://au.expasy.org/; Swiss-Prot: http://us.expasy.org/cgi-bin/niceprot.pl?; Taxonomy information: NEWT: http://www.ebi.ac.uk/newt/index.html; general information: CalPhotos: http://elib.cs.berkeley.edu/photos/; FishBase: http://www.fishbase.org/home.htm; Google images: http://images.google.com; Wikipedia: http://en.wikipedia.org/wiki/Main_Page. A Database of Human Hemoglobin Variants and Thalassemias: http://globin.bx.psu.edu/hbvar/menu.html; Molecular graphics: accelrys.com or Jmol.org.