Effect of a recD mutation on DNA damage resistance and transformation in Deinococcus radiodurans

Journal of Bacteriology

Volumn 189, Issue 14, 2007, Pages 5101-5107

  Servinsky, Matthew D ^a   Julin, Douglas A ^a  

^a Bldg 142   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL PROTEIN; DNA; HYDROGEN PEROXIDE; MESYLIC ACID METHYL ESTER; MITOMYCIN C; PROTEIN RECD; UNCLASSIFIED DRUG;

ARTICLE; BACTERIAL GENE; DEINOCOCCUS RADIODURANS; DNA DAMAGE; DNA REPAIR; ESCHERICHIA COLI; GAMMA RADIATION; GENE DELETION; GENE DISRUPTION; GENE MUTATION; GENE SEQUENCE; GENETIC TRANSFORMATION; HOMOLOGOUS RECOMBINATION; IONIZING RADIATION; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; RECB GENE; RECC GENE; RECD GENE; SEQUENCE HOMOLOGY; ULTRAVIOLET RADIATION;

BACTERIAL PROTEINS; BLOTTING, SOUTHERN; DEINOCOCCUS; DNA DAMAGE; DNA, BACTERIAL; DOSE-RESPONSE RELATIONSHIP, RADIATION; EXODEOXYRIBONUCLEASE V; GAMMA RAYS; GENETIC COMPLEMENTATION TEST; HYDROGEN PEROXIDE; MICROBIAL VIABILITY; MUTATION; TRANSFORMATION, BACTERIAL; ULTRAVIOLET RAYS;

BACTERIA (MICROORGANISMS); DEINOCOCCUS RADIODURANS; ESCHERICHIA COLI;

EID: 34447520500     PISSN: 00219193     EISSN: None     Source Type: Journal    
DOI: 10.1128/JB.00409-07     Document Type: Article

References (51)

1. Arthur, H. M., and R. G. Lloyd. 1980. Hyper-recombination in uvrD mutants of Escherichia coli K-12. Mol. Gen. Genet. 180:185-191.
2. Battista, J. R. 1997. Against all odds: the survival strategies of Deinococcus radiodurans. Annu. Rev. Microbiol. 51:203-224.
3. Bierne, H., M. Seigneur, S. D. Ehrlich, and B. Michel. 1997. uvrD mutations enhance tandem repeat deletion in the Escherichia coli chromosome via SOS induction of the RecF recombination pathway. Mol. Microbiol. 26:557-567.
4. Chaudhury, A. M., and G. R. Smith. 1984. A new class of Escherichia coli recBC mutants: implications for the role of RecBC enzyme in homologous recombination. Proc. Natl. Acad. Sci. USA 81:7850-7854.
5. Chedin, F., and S. C. Kowalczykowskl. 2002. A novel family of regulated helicases/nucleases from gram-positive bacteria: insights into the initiation of DNA recombination. Mol. Microbiol. 43:823-834.
6. Cox, M. M., and J. R. Battista. 2005. Deinococcus radiodurans - the consummate survivor. Nat. Rev. Microbiol. 3:882-892.
7. Daly, M. J., E. K. Gaidamakova, V. Y. Matrosova, A. Vasilenko, M. Zhai, R. D. Leapman, B. Lai, B. Ravel, S. M. Li, K. M. Kemner, and J. K. Fredrickson. 2007. Protein oxidation implicated as the primary determinant of bacterial radioresistance. PLoS Biol. 5:e92.
8. Daly, M. J., E. K. Gaidamakova, V. Y. Matrosova, A. Vasilenko, M. Zhai, A. Venkateswaran, M. Hess, M. V. Omelchenko, H. M. Kostandarithes, K. S. Makarova, L. P. Wackett, J. K. Fredrickson, and D. Ghosal. 2004. Accumulation of Mn(II) in Deinococcus radiodurans facilitates gamma-radiation resistance. Science 306:1025-1028.
9. Daly, M. J., L. Ouyang, P. Fuchs, and K. W. Minton. 1994. In vivo damage and recA-dependent repair of plasmid and chromosomal DNA in the radiation-resistant bacterium Deinococcus radiodurans. J. Bacteriol. 176:3508-3517.
10. Dean, C. J., P. Feldschreiber, and J. T. Lett. 1966. Repair of X-ray damage to the deoxyribonucleic acid in Micrococcus radiodurans. Nature 209:49-52.
11. Dronkert, M. L., and R. Kanaar. 2001. Repair of DNA interstrand cross-links. Mutat. Res. 486:217-247.
12. Earl, A. M., M. M. Mohundro, I. S. Mian, and J. R. Battista. 2002. The IrrE protein of Deinococcus radiodurans R1 is a novel regulator of recA expression. J. Bacteriol. 184:6216-6224.
13. Earl, A. M., S. K. Rankin, K. P. Kim, O. N. Lamendola, and J. R. Battista. 2002. Genetic evidence that the uvsE gene product of Deinococcus radiodurans R1 is a UV damage endonuclease. J. Bacteriol. 184:1003-1009.
14. Fox, M., and J. Hopkins. 1970. Post-irradiation DNA degradation and response to fractionated doses in Micrococcus radiodurans. Int. J. Radiat. Biol. Relat. Stud. Phys. Chem. Med. 18:507-519.
15. Friedberg, E. C., G. C. Walker, W. Siede, R. D. Wood, R. A. Schultz, and T. Ellenberger. 2006. DNA repair and mutagenesis, 2nd ed. ASM Press, Washington, DC.
16. Funayama, T., I. Narumi, M. Kikuchi, S. Kitayama, H. Watanabe, and K. Yamamoto. 1999. Identification and disruption analysis of the recN gene in the extremely radioresistant bacterium Deinococcus radiodurans. Mutat. Res. 435:151-161.
17. Ghosal, D., M. V. Omelchenko, E. K. Gaidamakova, V. Y. Matrosova, A. Vasilenko, A. Venkateswaran, M. Zhai, H. M. Kostandarithes, H. Brim, K. S. Makarova, L. P. Wackett, J. K. Fredrickson, and M. J. Daly. 2005. How radiation kills cells: survival of Deinococcus radiodurans and Shewanella oneidensis under oxidative stress. FEMS Microbiol. Rev. 29:361-375.
18. Gorbalenya, A. E., and E. V. Koonin. 1993. Helicases: amino acid sequence comparisons and structure-function relationships. Curr. Opin. Struct. Biol. 3:419-429.
19. Gutman, P. D., J. D. Carroll, C. I. Masters, and K. W. Minton. 1994. Sequencing, targeted mutagenesis and expression of a recA gene required for the extreme radioresistance of Deinococcus radiodurans. Gene 141:31-37.
20. Gutman, P. D., P. Fuchs, L. Ouyang, and K. W. Minton. 1993. Identification, sequencing, and targeted mutagenesis of a DNA polymerase gene required for the extreme radioresistance of Deinococcus radiodurans. J. Bacteriol. 175:3581-3590.
21. Hansen, M. T. 1978. Multiplicity of genome equivalents in the radiation-resistant bacterium Micrococcus radiodurans. J. Bacteriol. 134:71-75.
22. Harsojo, S. Kitayama, and A. Matsuyama. 1981. Genome multiplicity and radiation resistance in Micrococcus radiodurans. J. Biochem. (Tokyo) 90:877-880.
23. Hutchinson, F. 1985. Chemical changes induced in DNA by ionizing radiation. Prog. Nucleic. Acid Res. Mol. Biol. 32:115-154.
24. Ira, G., A. Malkova, G. Liberi, M. Foiani, and J. E. Haber. 2003. Srs2 and Sgs1-Top3 suppress crossovers during double-strand break repair in yeast. Cell 115:401-411.
25. Kitayama, S., S. Asaka, and K. Totsuka. 1983. DNA double-strand breakage and removal of cross-links in Deinococcus radiodurans. J. Bacteriol. 155:1200-1207.
26. Kowalczykowski, S. C. 2000. Initiation of genetic recombination and recombination-dependent replication. Trends Biochem. Sci. 25:156-165.
27. Kreuzer, K. N. 2005. Interplay between DNA replication and recombination in prokaryotes. Annu. Rev. Microbiol. 59:43-67.
28. Kuzminov, A. 1999. Recombinational repair of DNA damage in Escherichia coli and bacteriophage lambda. Microbiol. Mol. Biol. Rev. 63:751-813.
29. Lecointe, F., G. Coste, S. Sommer, and A. Bailone. 2004. Vectors for regulated gene expression in the radioresistant bacterium Deinococcus radiodurans. Gene 336:25-35.
30. Lett, J. T., P. Feldschreiber, J. G. Little, K. Steele, and C. J. Dean. 1967. The repair of X-ray damage to the deoxyribonucleic acid in Micrococcus radiodurans: a study of the excision process. Proc. R. Soc. Lond. B Biol. Sci. 167:184-201.
31. Levin-Zaidman, S., J. Englander, E. Shimoni, A. K. Sharma, K. W. Minton, and A. Minsky. 2003. Ringlike structure of the Deinococcus radiodurans genome: a key to radioresistance? Science 299:254-256.
32. Liberi, G., G. Maffioletti, C. Lucca, I. Chiolo, A. Baryshnikova, C. Cotta-Ramusino, M. Lopes, A. Pellicioli, J. E. Haber, and M. Foiani. 2005. Rad51-dependent DNA structures accumulate at damaged replication forks in sgs1 mutants defective in the yeast ortholog of BLM RecQ helicase. Genes Dev. 19:339-350.
33. Mankouri, H. W., and I. D. Hickson. 2004. Understanding the roles of RecQ helicases in the maintenance of genome integrity and suppression of tumorigenesis. Biochem. Soc. Trans. 32:957-958.
34. Masters, C. I., M. D. Smith, P. D. Gutman, and K. W. Minton. 1991. Heterozygosity and instability of amplified chromosomal insertions in the radioresistant bacterium Deinococcus radiodurans. J. Bacteriol. 173:6110-6117.
35. Mattimore, V., and J. R. Battista. 1996. Radioresistance of Deinococcus radiodurans: functions necessary to survive ionizing radiation are also necessary to survive prolonged desiccation. J. Bacteriol. 178:633-637.
36. Meima, R., and M. E. Lidstrom. 2000. Characterization of the minimal replicon of a cryptic Deinococcus radiodurans SARK plasmid and development of versatile Escherichia coli-D. radiodurans shuttle vectors. Appl. Environ. Microbiol. 66:3856-3867.
37. Mennecier, S., G. Coste, P. Servant, A. Bailone, and S. Sommer. 2004. Mismatch repair ensures fidelity of replication and recombination in the radioresistant organism Deinococcus radiodurans. Mol. Genet. Genomics 272:460-469.
38. Michel, B., G. Grompone, M. J. Flores, and V. Bidnenko. 2004. Multiple pathways process stalled replication forks. Proc. Natl. Acad. Sci. USA 101:12783-12788.
39. Minton, K. W. 1994. DNA repair in the extremely radioresistant bacterium Deinococcus radiodurans. Mol. Microbiol. 13:9-15.
40. Morel, P., J. A. Hejna, S. D. Ehrlich, and E. Cassuto. 1993. Antipairing and strand transferase activities of E. coli helicase II (UvrD). Nucleic Acids Res. 21:3205-3209.
41. Moseley, B. E., and J. K. Setlow. 1968. Transformation in Micrococcus radiodurans and the ultraviolet sensitivity of its transforming DNA. Proc. Natl. Acad. Sci. USA 61:176-183.
42. Rocha, E. P., E. Cornet, and B. Michel. 2005. Comparative and evolutionary analysis of the bacterial homologous recombination systems. PLoS Genet. 1:e15.
43. Russell, C. B., D. S. Thaler, and F. W. Dahlquist. 1989. Chromosomal transformation of Escherichia coli recD strains with linearized plasmids. J. Bacteriol. 171:2609-2613.
44. Smith, G. R. 1990. RecBCD enzyme. Nucleic Acids Mol. Biol. 4:78-98.
45. Tatusov, R. L., N. D. Fedorova, J. D. Jackson, A. R. Jacobs, B. Kiryutin, E. V. Koonin, D. M. Krylov, R. Mazumder, S. L. Mekhedov, A. N. Nikolskaya, B. S. Rao, S. Smirnov, A. V. Sverdlov, S. Vasudevan, Y. I. Wolf, J. J. Yin, and D. A. Natale. 2003. The COG database: an updated version includes eukaryotes. BMC Bioinformatics 4:41.
46. Veaute, X., S. Delmas, M. Selva, J. Jeusset, E. Le Cam, I. Matic, F. Fabre, and M. A. Petit. 2005. UvrD helicase, unlike Rep helicase, dismantles RecA nucleoprotein filaments in Escherichia coli. EMBO J. 24:180-189.
47. Wang, J., and D. A. Julin. 2004. DNA helicase activity of the RecD protein from Deinococcus radiodurans. J. Biol. Chem. 279:52024-52032.
48. White, O., J. A. Eisen, J. F. Heidelberg, E. K. Hickey, J. D. Peterson, R. J. Dodson, D. H. Haft, M. L. Gwinn, W. C. Nelson, D. L. Richardson, K. S. Moffat, H. Qin, L. Jiang, W. Pamphile, M. Crosby, M. Shen, J. J. Vamathevan, P. Lam, L. McDonald, T. Utterback, C. Zalewski, K. S. Makarova, L. Aravind, M. J. Daly, K. W. Minton, R. D. Fleischmann, K. A. Ketchum, K. E. Nelson, S. Salzberg, H. O. Smith, J. C. Venter, and C. M. Fraser. 1999. Genome sequence of the radioresistant bacterium Deinococcus radiodurans R1. Science 286:1571-1577.
49. Zahradka, K., D. Slade, A. Bailone, S. Sommer, D. Averbeck, M. Petranovic, A. B. Lindner, and M. Radman. 2006. Reassembly of shattered chromosomes in Deinococcus radiodurans. Nature 443:569-573.
50. Zhou, Q., X. Zhang, H. Xu, B. Xu, and Y. Hua. 10 April 2007, posting date. A new role of Deinococcus radiodurans RecD in antioxidant pathway. FEMS Microbiol. Lett. doi:10.1111/j.1574-6968.2007.00703.x.
51. Zimmerman, J. M., and J. R. Battista. 2005. A ring-like nucleoid is not necessary for radioresistance in the Deinococcaceae. BMC Microbiol. 5:17.