The chilean strawberry [Fragaria chiloensis (L.) Duch.]: Genetic diversity and structure

Journal of the American Society for Horticultural Science

Volumn 132, Issue 4, 2007, Pages 501-506

  Carrasco, Basilio ^a   Garcés, Marcelo ^a   Rojas, Pamela ^a   Saud, Guillermo ^a   Herrera, Raúl ^a   Retamales, Jorge B ^a   Caligari, Peter D S ^a  

^a UNIVERSIDAD DE TALCA   (Chile)

Author keywords

Bayesian clustering; ISSR; Plant domestication; White strawberry; Wild strawberry

Indexed keywords

FRAGARIA CHILOENSIS; FRAGARIA X ANANASSA;

EID: 34447498940     PISSN: 00031062     EISSN: None     Source Type: Journal    
DOI: 10.21273/jashs.132.4.501     Document Type: Article

References (44)

1. Alpert, P., R. Lumaret, and F. Di Giusto. 1993. Population structure inferred from allozyme analysis in the clonal herb Fragaria chiloensis (Rosaceae). Amer. J. Bot. 80:1002-1006.
2. Arnau, G., J. Lallemand, and M. Bourgoing. 2002. Fast and reliable strawberry cultivar identification using inter simple sequence repeat (ISSR) amplification. Euphytica 129:69-79.
3. Ashley, M.V., J.A. Wilk, S.M.N. Styan, K.J. Craft, K.L. Jones, K.A. Feldheim, K.S. Lewers, and T.L. Ashman. 2003. High variability and disomic segregation of microsatellites in the octoploid Fragaria virginiana Mill. (Rosaceae). Theor. Appl. Genet. 107:1201-1207.
4. Barrera, C. 2001. Caracterización morfológica y fenológica de 52 accesiones de Fragaria chiloensis (L.) Duch. Tesis Ingeniero Agrónomo, Universidad de Talca, Chile.
5. Becerra, V., M. Paredes, A. Romero, and A. Lavin. 2001. Diversidad bioquímica y molecular en frutillas chilenas Fragaria chiloensis (L.) Duch. y su implicancia en el mejoramiento genético de la especie. Agricultura Técnica (Chile) 61:413-428.
6. Burke, J.M., S. Tang, S.J. Knapp, and L.H. Rieseberg. 2002. Genetic analysis of sunflower domestication. Genetics 161:1257-1267.
7. Carrasco, B. 2006. Identification and geographic location of Chilean strawberry accessions. 22 Sept. 2006. 〈http://biologia.utalca.cl/imagenes/ supplementary-information-JASHS-00820.doc〉.
8. Darrow, G.M. 1966. The strawberry: History, breeding and physiology. Holt, Rinehart and Winston, New York.
9. Dawson, K.J. and K. Belkhir. 2001. A Bayesian approach to the identification of panmictic populations and the assignment of individuals. Genet. Res. 78:59-77.
10. Doebley, J., A. Stec, and L. Hubbard. 1997. The evolution of apical dominance in maize. Nature 386:485-488.
11. Excoffier, L., P.E. Smouse, and J.M. Quattro. 1992. Analysis of molecular variance inferred from metric distances among DNA haplotypes: Application to human mitochondrial DNA restriction data. Genetics 131:479-491.
12. Frary, A., T.C. Nesbitt, S. Grandillo, E. van der Knaap, B. Cong, J. Liu, J. Meller, R. Elber, K.B. Alpert, and S.D. Tanksley. 2000. fw2.2: A quantitative trait locus key to the evolution of tomato fruit size. Science 289:85-88.
13. Gilbert, J.E., R.V. Lewis, M.J. Wilkinson, and P.D.S. Caligari. 1999. Developing an appropriate strategy to assess genetic variability in plant germplasm collections. Theor. Appl. Genet. 98:1125-1131.
14. Hancock, J.F. 1990. Ecological genetics of natural strawberry species. HortScience 25:869-871.
15. Hancock, J.F. 1999. Strawberries. CAB International, Wallingford, UK.
16. Hancock, J.F., P.W. Callow, S. Serce, and P.Q. Son. 2003. Variation in the horticultural characteristics of native Fragaria virginiana and Fragaria chiloensis from North and South America. J. Amer. Soc. Hort. Sci. 128:201-208.
17. Hancock, J.F., A. Lavin, and J.B. Retamales. 1999. Our southern strawberry heritage: Fragaria chiloensis of Chile. HortScience 34:814-816.
18. Herrera, R., V. Cares, M.J. Wilkinson, and P.D.S. Caligari. 2002. Characterization of genetic variation between Vitis vinifera cultivars from central Chile using RAPD and inter simple sequence repeat markers. Euphytica 124:139-145.
19. Hinrichsen, P., J. Kuncar, H. Masashi, C. Muñoz, and A. Lavín. 1999. Diversidad genética en accesiones chilenas de Fragaria chiloensis (L.) Duch., determinada mediante RADPs (random amplified polymorphic DNA). Agriculture Técnica (Chile) 59:151-168.
20. Kantety, R.V., M. La Rota, D.E. Matthews, and M.E. Sorrells. 2002. Data mining for simple sequence repeats in expressed sequence tags from barley, maize, rice, sorghum and wheat. Plant Mol. Biol. 48:501-510.
21. Lavín, A. and M. Maureira. 2000. La frutilla de fruto bianco. Boletín Instituto de Investigaciones Agropecuarias - Chile, No. 39.
22. Lavín, A., A. del Pozo, and M. Maureira. 2000. Distribución actual de Fragaria chiloensis en Chile. Plant Genet. Res. News 122:24-28.
23. Li, Y.-C., A.B. Korol, T. Fahima, A. Beiles, and E. Nevo. 2002. Microsatellites: Genomic distribution, putative functions and mutational mechanisms: A review. Mol. Ecol. 11:2453-2465.
24. Li, Y.C., A.B. Korol, T. Fahima, and E. Nevo. 2004. Microsatellites within genes: Structure, function, and evolution. Mol. Biol. Evol. 21:991-1007.
25. Liu, J., J. van Eck, B. Cong, and S.D. Tanksley. 2002. A new class of regulatory genes underlying the cause of pear-shape tomato fruit. Proc. Natl. Acad. Sci. USA 99:13302-13306.
26. Medina, J.T. 1917. Voces chilenas de los reinos animal y vegetal que pudieran incluirse en el diccionario de la lengua castellana. Imprenta Universitaria, Santiago, Chile.
27. Medina, J.T. 1952. Los aborígenes de Chile Fondo histórico y bibliográfico José Toribio Medina, Santiago, Chile.
28. Morgante, M., M. Hanafey, and W. Powell. 2002. Microsatellites are preferentially associated with non-repetitive DNA in plant genomes. Nat. Genet. 30:194-200.
29. Nei, M. 1973. Analysis of gene diversity in subdivided populations. Proc. Natl. Acad. Sci. USA 70:3321-3323.
30. Nybom, H. 2004. Comparison of different nuclear DNA markers for estimating intraspecific genetic diversity in plant. Mol. Ecol. 13:1143-1155.
31. Pluess, A.R. and J. Stocklin. 2004. Population genetic diversity of the clonal plant Geum reptans (Rosaceae) in the Swiss Alps. Amer. J. Bot. 91:2013-2023.
32. Pomper, K.W., S.B. Crabtree, S.P. Brown, S.C. Jones, T.M. Bonney, and D.R. Layne. 2003. Assessment of genetic diversity of pawpaw (Asimina triloba) cultivars with intersimple sequence repeat markers. J. Amer. Soc. Hort. Sci. 128:521-525.
33. Pritchard, J.K., M. Stephens, and P. Donnelly. 2000. Inference of population structure using multilocus genotype data. Genetics 155:945-959.
34. Pritchard, J.K. and W. Wen. 2003. Documentation for structure software: Version 2.1. 26 July 2006. 〈http://pritch.bsd.uchicago.edu〉.
35. Shannon, C. 1948. A mathematical theory of communication. Bell System Tech. J. 27:379-423.
36. Shaw, D.V. 1995. Comparison of ancestral and current-generation inbreeding in an experimental strawberry breeding population. Theor. Appl. Genet. 90:237-241.
37. Shaw, D.V. 1997. Trait mean depression for second-generation inbred strawberry populations with and without parent selection. Theor. Appl. Genet. 95:261-264.
38. Sneath, P.H.A. and R.R. Sokal. 1973. Numerical taxonomy - The principles and practice of numerical classification. Freeman, San Francisco.
39. Van der Knaap, E. and S.D. Tanksley. 2003. The making of a bell pepper-shaped tomato fruit: Identification of loci controlling fruit morphology in Yellow Stuffer tomato. Theor. Appl. Genet. 107:139-147.
40. Wilhelm, S. and J.E. Sagen. 1972. A history of the strawberry: From ancient gardens to modern markets. Agriculture Publ., Univ. of California, Berkeley.
41. Wolfe, A.D., Q.-Y. Xiang, and S.R. Kephart. 1998. Assessing hybridization in natural populations of penstemon (Scrophulariaceae) using hypervariable inter simple sequence repeat (ISSR) bands. Mol. Ecol. 7:1107-1125.
42. Yano, M., Y. Katayose, M. Ashikari, U. Yamanouchi, L. Monna, T. Fuse, T. Baba, K. Yamamoto, Y. Umehara, Y. Nagamura, and T. Sasaki. 2000. Hdl, A major photoperiod sensitivity QTL in rice, is closely related to the Arabidopsis flowering time gene CONSTANS. Plant Cell 12:2473-2483.
43. Yeh, F.C., R.C. Yang, T.B.J. Boyle, Z.H. Ye, and J.X. Mao. 1997. POPGENE, the user-friendly shareware for population genetic analysis. Molecular Biology and Biotechnology Centre, University of Alberta, Edmonton, Canada.
44. Zietkiewicz, E., A. Rafalski, and D. Labuda. 1994. Genome finger-printing by simple sequence repeat (SSR)-anchored polymerase chain reaction amplification. Genomics 20:176-183.