A reference map of human nasopharyngeal squamous carcinoma proteome

International Journal of Oncology

Volumn 30, Issue 5, 2007, Pages 1077-1088

  Li, Feng ^a   Xiao, Zhiqiang ^a   Zhang, Pengfei ^a   Li, Jianling ^a   Li, Maoyu ^a   Feng, Xueping ^a   Guan, Yongjun ^a   Chen, Zhuchu ^a  

^a CENTRAL SOUTH UNIVERSITY   (China)

Author keywords

Mass spectrometry; Nasopharyngeal carcinoma; Proteome; Reference map; Two dimensional gel electrophoresis

Indexed keywords

PROTEIN; TUMOR PROTEIN;

AMINO ACID SEQUENCE; ARTICLE; CHEMISTRY; COMPUTER PROGRAM; ELECTROSPRAY MASS SPECTROMETRY; HUMAN; IMAGE PROCESSING; MASS SPECTROMETRY; METABOLISM; METHODOLOGY; MOLECULAR GENETICS; NASOPHARYNX TUMOR; PATHOLOGY; PROTEIN DATABASE; PROTEOMICS; REPRODUCIBILITY; SQUAMOUS CELL CARCINOMA; TWO DIMENSIONAL GEL ELECTROPHORESIS;

AMINO ACID SEQUENCE; CARCINOMA, SQUAMOUS CELL; DATABASES, PROTEIN; ELECTROPHORESIS, GEL, TWO-DIMENSIONAL; HUMANS; IMAGE PROCESSING, COMPUTER-ASSISTED; MASS SPECTROMETRY; MOLECULAR SEQUENCE DATA; NASOPHARYNGEAL NEOPLASMS; NEOPLASM PROTEINS; PROTEINS; PROTEOMICS; REPRODUCIBILITY OF RESULTS; SOFTWARE; SPECTROMETRY, MASS, ELECTROSPRAY IONIZATION;

EID: 34447325682     PISSN: 10196439     EISSN: 17912423     Source Type: Journal    
DOI: 10.3892/ijo.30.5.1077     Document Type: Article

References (24)

1. Yu MC and Yuan JM: Epidemiology of nasopharyngeal carcinoma. Semin Cancer Biol 12: 421-429, 2002.
2. Licitra L, Bernier J, Cvitkovic E, Grandi C, Spinazze S, Bruzzi P, Gatta G and Molinari R: Cancer of the nasopharynx. Crit Rev Oncol Hematol 45: 199-213, 2003.
3. Huang T, Liu Q, Huang H and Cao S: Study on genetic epidemiology of nasopharyngeal carcinoma in Guangdong, China. Zhonghua Yi Xue Yi Chuan Xue Za Zhi 19: 134-137, 2002.
4. Lo KW and Huang DP: Genetic and epigenetic changes in nasopharyngeal carcinoma. Semin Cancer Biol 12: 451-462, 2002.
5. Cheng Y, Poulos NE, Lung ML, Hampton G, Ou B, Lerman MI and Stanbridge EJ: Functional evidence for a nasopharyngeal carcinoma tumor suppressor gene that maps at chromosome 3p21.3. Proc Natl Acad Sci USA 95: 3042-3047, 1998. (Pubitemid 28135851)
6. Chow LS, Lo KW, Kwong J, To KF, Tsang KS, Lam CW, Dammann R and Huang DP: RASSF1A is a target tumor suppressor from 3p21.3 in nasopharyngeal carcinoma. Int J Cancer 109: 839-847, 2004. (Pubitemid 38500740)
7. Raab-Traub N: Epstein-Barr virus in the pathogenesis of NPC. Semin Cancer Biol 12: 431-441, 2002.
8. Griffin BE: Epstein-Barr virus (EBV) and human disease: facts, opinions and problems. Mutat Res 462: 395-405, 2000.
9. Young LS and Murray PG: Epstein-Barr virus and oncogenesis: from latent genes to tumours. Oncogene 22: 5108-5121, 2003. (Pubitemid 37059592)
10. Baak JP, Path FR, Hermsen MA, Meijer G, Schmidt J and Janssen EA: Genomics and proteomics in cancer. Eur J Cancer 39: 1199-1215, 2003.
11. Hanash SM, Bobek MP, Rickman DS, Williams T, Rouillard JM, Kuick R and Puravs E: Integrating cancer genomics and proteomics in the post-genome era. Proteomics 2: 69-75, 2002. (Pubitemid 34273100)
12. Hanash SM: Global profiling of gene expression in cancer using genomics and proteomics. Curr Opin Mol Ther 3: 538-545, 2001. (Pubitemid 34041263)
13. Sanchez JC, Appel RD, Golaz O, Pasquali C, Ravier F, Bairoch A and Hochstrasser DF: Inside SWISS-2DPAGE database. Electrophoresis 16: 1131-1151, 1995.
14. Hoogland C, Sanchez JC, Walther D, Baujard V, Baujard O, Tonella L, Hochstrasser DF and Appel RD: Two-dimensional electrophoresis resources available from ExPASy. Electrophoresis 20: 3568-3571, 1999. (Pubitemid 30007253)
15. Li C, Chen Z, Xiao Z, Wu X, Zhan X, Zhang X, Li M, Li J, Feng X, Liang S, Chen P and Xie JY: Comparative proteomics analysis of human lung squamous carcinoma. Biochem Biophys Res Commun 309: 253-260, 2003. (Pubitemid 36999783)
16. Candiano G, Bruschi M, Musante L, Santucci L, Ghiggeri GM, Carnemolla B, Orecchia P, Zardi L and Righetti PG: Blue silver: a very sensitive colloidal Coomassie G-250 staining for proteome analysis. Electrophoresis 25: 1327-1333, 2004. (Pubitemid 38801651)
17. Gorg A, Obermaier C, Boguth G and Weiss W: Recent developments in two-dimensional gel electrophoresis with immobilized pH gradients: wide pH gradients up to pH 12.0, longer separation distances and simplified procedures. Electrophoresis 20: 712-717, 1999.
18. Corbett JM, Dunn MJ, Posch A and Gorg A: Positional reproducibility of protein spots in two-dimensional polyacrylamide gel electrophoresis using immobilised pH gradient isoelectric focusing in the first dimension: an interlaboratory comparison. Electrophoresis 15: 1205-1211, 1994.
19. Ferguson RE, Carroll HP, Harris A, Maher ER, Selby PJ and Banks RE: Housekeeping proteins: a preliminary study illustrating some limitations as useful references in protein expression studies. Proteomics 5: 566-571, 2005.
20. Perkins DN, Pappin DJ, Creasy DM and Cottrell JS: Probability-based protein identification by searching sequence databases using mass spectrometry data. Electrophoresis 20: 3551-3567, 1999.
21. Kinnula VL, Paakko P and Soini Y: Antioxidant enzymes and redox regulating thiol proteins in malignancies of human lung. FEBS Lett 569: 1-6, 2004.
22. Zhan X and Desiderio DM: A reference map of a human pituitary adenoma proteome. Proteomics 3: 699-713, 2003. (Pubitemid 36570260)
23. Dupont A, Tokarski C, Dekeyzer O, Guihot AL, Amouyel P, Rolando C and Pinet F: Two-dimensional maps and databases of the human macrophage proteome and secretome. Proteomics 4: 1761-1778, 2004.
24. Dos Remedios CG, Chhabra D, Kekic M, Dedova IV, Tsubakihara M, Berry DA and Nosworthy NJ: Actin binding proteins: regulation of cytoskeletal microfilaments. Physiol Rev 83: 433-473, 2003.