메뉴 건너뛰기




Volumn 54, Issue 4, 2007, Pages 793-806

The 5S rRNA gene diversity in the genus Secale and determination of its closest haplomes

Author keywords

Bayesian analysis; Dasypyrum; J haplome; Maximum likelihood; Pseudoroegneria; R haplome; Secale St haplome; Thinopyrum; V haplome

Indexed keywords

BAYESIAN ANALYSIS; CULTIVAR; DNA; GENETIC ANALYSIS; GENETIC VARIATION; GRASS; MAXIMUM LIKELIHOOD ANALYSIS; PHYLOGENETICS; RNA; SEED;

EID: 34447321605     PISSN: 09259864     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10722-006-9149-6     Document Type: Article
Times cited : (9)

References (41)
  • 2
    • 0002521235 scopus 로고
    • Evolution of the NOR and 5S DNA loci in the Triticeae
    • Chapman & Hall New York, USA
    • Appels R, Baum BR (1992) Evolution of the NOR and 5S DNA loci in the Triticeae. In: Doyle JJ, Soltis PS (eds) Plant molecular systematics. Chapman & Hall, New York, USA, pp 92-116
    • (1992) Plant Molecular Systematics , pp. 92-116
    • Appels, R.1    Baum, B.R.2    Doyle, J.J.3    Soltis, P.S.4
  • 3
    • 0006831643 scopus 로고
    • The 5S DNA units of bread wheat (Triticum aestivum)
    • Appels R, Baum BR, Clarke BC (1992) The 5S DNA units of bread wheat (Triticum aestivum). Plant Syst Evol 183:183-194
    • (1992) Plant Syst Evol , vol.183 , pp. 183-194
    • Appels, R.1    Baum, B.R.2    Clarke, B.C.3
  • 4
    • 0001711790 scopus 로고
    • A phylogenetic analysis of the tribe Triticeae (Poaceae) based on morphological characters of the genera
    • Baum BR (1983) A phylogenetic analysis of the tribe Triticeae (Poaceae) based on morphological characters of the genera. Can J Bot 61:518-535
    • (1983) Can J Bot , vol.61 , pp. 518-535
    • Baum, B.R.1
  • 5
    • 0031109759 scopus 로고    scopus 로고
    • The molecular diversity of the 5S rRNA gene in Kengyilia alatavica (Drobov) J.L. Yang, Yen & Baum (Poaceae: Triticeae): potential genomic assignment of different rDNA units
    • Baum BR, Bailey LG (1997) The molecular diversity of the 5S rRNA gene in Kengyilia alatavica (Drobov) J.L. Yang, Yen & Baum (Poaceae: Triticeae): potential genomic assignment of different rDNA units. Genome 40:215-228
    • (1997) Genome , vol.40 , pp. 215-228
    • Baum, B.R.1    Bailey, L.G.2
  • 6
    • 0034478960 scopus 로고    scopus 로고
    • The 5S rDNA units in Kengyilia
    • Baum BR, Bailey LG (2000) The 5S rDNA units in Kengyilia. Can J Bot 78:1571-1579
    • (2000) Can J Bot , vol.78 , pp. 1571-1579
    • Baum, B.R.1    Bailey, L.G.2
  • 7
    • 0034990236 scopus 로고    scopus 로고
    • The 5S rRNA gene sequence variation in wheats and polyploid wheat progenitors, and the information it conveys about genome constitution in Triticum L. (Poaceae: Triticeae)
    • Baum BR, Bailey LG (2001) The 5S rRNA gene sequence variation in wheats and polyploid wheat progenitors, and the information it conveys about genome constitution in Triticum L. (Poaceae: Triticeae). Genet Resour Crop Evol 48:35-51
    • (2001) Genetic Res Crop Evol , vol.48 , pp. 35-51
    • Baum, B.R.1    Bailey, L.G.2
  • 8
    • 0028676173 scopus 로고
    • The molecular diversity of the 5S rRNA gene in barley (Hordeum vulgare)
    • Baum BR, Johnson DA (1994) The molecular diversity of the 5S rRNA gene in barley (Hordeum vulgare). Genome 37:992-998
    • (1994) Genome , vol.37 , pp. 992-998
    • Baum, B.R.1    Johnson, D.A.2
  • 9
    • 0036372092 scopus 로고    scopus 로고
    • A comparison of the 5S rDNA diversity in the Hordeum brachyantherum- californicum complex with those of the eastern Asiatic Hordeum roshevitzii and the South American Hordeum cordobense (Triticeae: Poaceae)
    • Baum BR, Johnson DA (2002) A comparison of the 5S rDNA diversity in the Hordeum brachyantherum-californicum complex with those of the eastern Asiatic Hordeum roshevitzii and the South American Hordeum cordobense (Triticeae: Poaceae). Can J Bot 80:752-762
    • (2002) Can J Bot , vol.80 , pp. 752-762
    • Baum, B.R.1    Johnson, D.A.2
  • 10
    • 0036303420 scopus 로고    scopus 로고
    • Defining groups among multi-copy genes prior to inferring phylogeny, with special emphasis on the Triticeae (Poaceae)
    • Baum BR, Johnson DA, Bailey LG (2001) Defining groups among multi-copy genes prior to inferring phylogeny, with special emphasis on the Triticeae (Poaceae). Hereditas 135:123-138
    • (2001) Hereditas , vol.135 , pp. 123-138
    • Baum, B.R.1    Johnson, D.A.2    Bailey, L.G.3
  • 11
    • 0031153955 scopus 로고    scopus 로고
    • Distribution of highly repeated DNA sequences in species of the genus Secale
    • Cuadrado A, Jouve N (1997) Distribution of highly repeated DNA sequences in species of the genus Secale. Genome 40:309-317
    • (1997) Genome , vol.40 , pp. 309-317
    • Cuadrado, A.1    Jouve, N.2
  • 12
    • 0002594984 scopus 로고
    • A rapid DNA isolation procedure from small quantities of fresh leaf tissues
    • Doyle JJ, Doyle JL (1987) A rapid DNA isolation procedure from small quantities of fresh leaf tissues. Phytochem Bull 19:11-15
    • (1987) Phytochem Bull , vol.19 , pp. 11-15
    • Doyle, J.J.1    Doyle, J.L.2
  • 13
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: An approach using the bootstrap
    • Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783-791
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 14
    • 0031732203 scopus 로고    scopus 로고
    • A taxonomic revision of Secale (Triticeae, Poaceae)
    • Frederiksen S, Petersen G (1998) A taxonomic revision of Secale (Triticeae, Poaceae). Nord J Bot 18:399-420
    • (1998) Nord J Bot , vol.18 , pp. 399-420
    • Frederiksen, S.1    Petersen, G.2
  • 15
    • 34250104420 scopus 로고
    • Vorarbeiten zur monographischen Darstellung von Wildpfanzensortimenten: Secale L
    • Hammer K, Skolimowska E, Knüpffer H (1987) Vorarbeiten zur monographischen Darstellung von Wildplanzensortimenten: Secale L. Kulturpflanze 35:135-177
    • (1987) Kulturpflanze , vol.35 , pp. 135-177
    • Hammer, K.1    Skolimowska, E.2    Knüpffer, H.3
  • 16
    • 0022376704 scopus 로고
    • Dating the human-ape splitting by a molecular clock of mitochondrial DNA
    • Hasegawa M, Kishino K, Yano T (1985) Dating the human-ape splitting by a molecular clock of mitochondrial DNA. J Mol Evol 22:160-174
    • (1985) J Mol Evol , vol.22 , pp. 160-174
    • Hasegawa, M.1    Kishino, K.2    Yano, T.3
  • 17
    • 0020286044 scopus 로고
    • Branch and bound algorithms to determine minimal evolutionary trees
    • Hendy MD, Penny D (1982) Branch and bound algorithms to determine minimal evolutionary trees. Math. Biosci. 59:277-290
    • (1982) Math Biosci , vol.59 , pp. 277-290
    • Hendy, M.D.1    Penny, D.2
  • 18
    • 0029278663 scopus 로고
    • Phylogenetic relationships of the monogenomic species of the wheat tribe, Triticeae (Poaceae), inferred from nuclear rDNA (internal transcribed spacer) sequences
    • Hsiao C, Chatterton NJ, Asay KH, Jensen KB (1995) Phylogenetic relationships of the monogenomic species of the wheat tribe, Triticeae (Poaceae), inferred from nuclear rDNA (internal transcribed spacer) sequences. Genome 38:211-23
    • (1995) Genome , vol.38 , pp. 211-223
    • Hsiao, C.1    Chatterton, N.J.2    Asay, K.H.3    Jensen, K.B.4
  • 19
    • 0034849408 scopus 로고    scopus 로고
    • MRBAYES: Bayesian inference of phylogenetic trees
    • Huelsenbeck JP, Ronquist F (2001) MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17:754-755
    • (2001) Bioinformatics , vol.17 , pp. 754-755
    • Huelsenbeck, J.P.1    Ronquist, F.2
  • 20
    • 0010765287 scopus 로고
    • Tools for studying the chloroplast genome in the Triticeae (Gramineae): An EcoRI map, a diagnostic deletion, and support for Bromus as an outgroup
    • Kellog EA (1992) Tools for studying the chloroplast genome in the Triticeae (Gramineae): an EcoRI map, a diagnostic deletion, and support for Bromus as an outgroup. Am J Bot 79:186-197
    • (1992) Am J Bot , vol.79 , pp. 186-197
    • Kellog, E.A.1
  • 21
    • 0030425120 scopus 로고    scopus 로고
    • When genes tell different stories : tthe diploid genera of Triticeae (Gramineae)
    • Kellogg EA, Appels R, Mason-Gamer RJ (1996) When genes tell different stories : the diploid genera of Triticeae (Gramineae). Syst Bot 21:321-347
    • (1996) Syst Bot , vol.21 , pp. 321-347
    • Kellogg, E.A.1    Appels, R.2    Mason-Gamer, R.J.3
  • 22
    • 0001079372 scopus 로고
    • Cytogenetic and evolutionary studies in Secale. II. Interrelationships of the wild species
    • Khush GS (1962) Cytogenetic and evolutionary studies in Secale. II. Interrelationships of the wild species. Evolution 16:484-496
    • (1962) Evolution , vol.16 , pp. 484-496
    • Khush, G.S.1
  • 23
    • 0012564839 scopus 로고
    • Cytogenetic and evolutionary studies in Secale. I. Some new data on the ancestry of Secale
    • Khush GS, Stebbins GL (1961) Cytogenetic and evolutionary studies in Secale. I. Some new data on the ancestry of Secale. Am J Bot 48:723-730
    • (1961) Am J Bot , vol.48 , pp. 723-730
    • Khush, G.S.1    Stebbins, G.L.2
  • 25
    • 0000764225 scopus 로고
    • Conspectus of the Triticeae
    • Löve Á (1984) Conspectus of the Triticeae. Feddes Repert 95:425-521
    • (1984) Feddes Repert , vol.95 , pp. 425-521
    • Löve A.́1
  • 26
    • 1642401473 scopus 로고    scopus 로고
    • Reticulate evolution, introgression, and intertribal gene capture in an allohexaploid grass
    • Mason-Gamer RJ (2004) Reticulate evolution, introgression, and intertribal gene capture in an allohexaploid grass. Syst Biol 53:25-37
    • (2004) Syst Biol , vol.53 , pp. 25-37
    • Mason-Gamer, R.J.1
  • 27
    • 34447329079 scopus 로고
    • Conspectus specierum generic Secale. Schedae ad Herbarium Florae Asiae Mediae ab Universitate Asiae Mediae editum
    • Nevski SA (1934a) Conspectus specierum generic Secale. Schedae ad Herbarium Florae Asiae Mediae ab Universitate Asiae Mediae editum. Acta Univ Asiae Mediae Ser VIII b Botanica Taschkent, Fasc 22:47-48
    • (1934) Acta Univ Asiae Mediae Ser VIII B Botanica Taschkent, Fasc , vol.22 , pp. 47-48
    • Nevski, S.A.1
  • 28
    • 34447309391 scopus 로고
    • Genus 200
    • Komarov VL (ed) [Translated from Russian, National Science Foundation, Washington]
    • Nevski SA (1934b) Genus 200. In: Komarov VL (ed) Secale L. Flora of the U.S.S.R. [Translated from Russian, National Science Foundation, Washington], vol 2, pp 530-533
    • (1934) Secale L. Flora of the U.S.S.R. , vol.2 , pp. 530-533
    • Nevski, S.A.1
  • 29
    • 0027957393 scopus 로고
    • FastDNAml: A tool for construction of phylogenetic trees of DNA sequences using maximum likelihood
    • Olsen GJ, Matsuda H, Hagstrom R, Overbeek R (1994) FastDNAml: A tool for construction of phylogenetic trees of DNA sequences using maximum likelihood. Comput Appl Biosci 10:41-48
    • (1994) Comput Appl Biosci , vol.10 , pp. 41-48
    • Olsen, G.J.1    Matsuda, H.2    Hagstrom, R.3    Overbeek, R.4
  • 30
    • 0027130805 scopus 로고
    • Chloroplast DNA variation in the genus Secale (Poaceae)
    • Petersen G, Doebley JF (1993) Chloroplast DNA variation in the genus Secale (Poaceae). Plant Syst. Evol. 187:115-125
    • (1993) Plant Syst Evol , vol.187 , pp. 115-125
    • Petersen, G.1    Doebley, J.F.2
  • 31
    • 0031773680 scopus 로고    scopus 로고
    • Modeltest: Testing the model of DNA substitution
    • Posada D, Crandall KA (1998) Modeltest: testing the model of DNA substitution. Bioinformatics 14:817-818
    • (1998) Bioinformatics , vol.14 , pp. 817-818
    • Posada, D.1    Crandall, K.A.2
  • 33
    • 0024688771 scopus 로고
    • A second locus for the 5S multigene family in Secale L.: Sequence divergence in two lineages of the family
    • Reddy P, Appels R (1988) A second locus for the 5S multigene family in Secale L.: sequence divergence in two lineages of the family. Genome 32:457-467
    • (1988) Genome , vol.32 , pp. 457-467
    • Reddy, P.1    Appels, R.2
  • 34
    • 33751431237 scopus 로고
    • Ribosomal DNA spacer-length variation in Secale spp. (Poaceae)
    • Reddy P, Baum BR, Appels R (1990) Ribosomal DNA spacer-length variation in Secale spp. (Poaceae). Plant Syst Evol 171:205-220
    • (1990) Plant Syst Evol , vol.171 , pp. 205-220
    • Reddy, P.1    Baum, B.R.2    Appels, R.3
  • 35
    • 0023375195 scopus 로고
    • The neighbour-joining method: A new method for reconstructing phylogenetic trees
    • Saitou N, Nei M (1987) The neighbour-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406-425
    • (1987) Mol Biol Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 37
    • 0027968068 scopus 로고
    • CLUSTALW: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTALW: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673-4680
    • (1994) Nucleic Acids Res , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 38
    • 0344293497 scopus 로고
    • Diploid perennial intergeneric hybrids in the tribe Triticeae. III. Hybrids among Secale montanum, Pseudoroegneria spicata, and Agropyron mongolicum
    • Wang RRC (1987) Diploid perennial intergeneric hybrids in the tribe Triticeae. III. Hybrids among Secale montanum, Pseudoroegneria spicata, and Agropyron mongolicum. Genome 29:80-84
    • (1987) Genome , vol.29 , pp. 80-84
    • Wang, R.R.C.1
  • 39
    • 0035339920 scopus 로고    scopus 로고
    • Molecular phylogenetics: State-of-the-art methods for looking into the past
    • Whelan S, Liò P, Goldman N (2001) Molecular phylogenetics: state-of-the-art methods for looking into the past. Trends Genet 17:262-272
    • (2001) Trends Genet , vol.17 , pp. 262-272
    • Whelan, S.1    Liò, P.2    Goldman, N.3
  • 40
    • 0028064845 scopus 로고
    • Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: Approximate methods
    • Yang Z (1994) Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximate methods. J Mol Evol 39:306-314
    • (1994) J Mol Evol , vol.39 , pp. 306-314
    • Yang, Z.1
  • 41
    • 0021943518 scopus 로고
    • Improved M13 phage cloning vectors and host strains; Nucleotide sequence of M13mp18 and pUC19 vectors
    • Yanisch-Perron C, Vieira J, Messing J (1985) Improved M13 phage cloning vectors and host strains; nucleotide sequence of M13mp18 and pUC19 vectors. Gene 33:103-119
    • (1985) Gene , vol.33 , pp. 103-119
    • Yanisch-Perron, C.1    Vieira, J.2    Messing, J.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.