Phylogeography of Homalothecium sericeum (Hedw.) Br. Eur.; toward a reconstruction of glacial survival and postglacial migration

Journal of Bryology

Volumn 28, Issue 4, 2006, Pages 283-292

  Hedderson, Terry A ^a   Nowell, Tracey L ^a  

^a UNIVERSITY OF CAPE TOWN   (South Africa)

Author keywords

Homalothecium; ITS; Phylogeography; Postglacial recolonization; Recombination; Refugia

Indexed keywords

BACTERIA (MICROORGANISMS); BRYOPHYTA; HOMALOTHECIUM; HOMALOTHECIUM LUTESCENS; HOMALOTHECIUM SERICEUM;

EID: 34447294877     PISSN: 03736687     EISSN: None     Source Type: Journal    
DOI: 10.1179/174328206X136287     Document Type: Article

References (67)

1. Bakker FT, Olsen JJ, Stam WT. 1995. Evolution of rDNA ITS sequences in the Cladophora albidalsericea clade (Chlorophyta). Journal of Molecular Evolution 40: 640-651.
2. Baldwin GB. 1992. Phylogenetic utility of the Internal Transcribed Spacers of nuclear ribosomal DNA in plants: an example from the Compositae. Molecular Phylogenetics and Evolution 1: 3-16.
3. Barton NH, I Wilson. 1996. Genealogies and geography. In: Harvey, PH, Leigh Brown AJ, Maynard Smith J, Nee S, eds. New uses for new phylogenies. Oxford: Oxford University Press, 23-56.
4. Belland RJ 1987. The moss flora of the Gulf of St. Lawrence region: ecology and phytogeography. Journal of the Hattori Botanical Laboratory 62: 205-267.
5. Bennett KD 1990. Milankovitch cycles and their effects on species in ecological and evolutionary time. Paleobiology 16: 11-21.
6. Birks HH, Ammann B. 2000. Two terrestrial records of rapid climate change during the glacial-Holocene transition (14,000-9,000 calendar years BP) for Europe. Proceedings of the National Academy of Science of the USA 97: 1390-1394.
7. Birks HJB. 1989. Holocene isochrone maps and patterns of tree-spreading in the British Isles. Journal of Biogeography 18: 103-115.
8. Bromham L, Penny D. 2003. The modern molecular clock. Nature Reviews Genetics 4: 216-224.
9. Buckler ES, Ippolito A, Holtsford TP. 1997. The evolution of ribosomal DNA: divergent paralogues and phylogenetic implications. Genetics 145: 821-832.
10. Campbell CS, Wojciechowski MF, Baldwin BG, Alice LA, Donoghue MJ. 1997. Persistent nuclear ribosomal DNA polymorphism in the agamic Amelanchier complex (Rosaceae). Molecular Biology and Evolution 14: 81-90.
11. Chiang TY, Schaal BA. 1999. Phylogeography of North American populations of the moss species Hylocomium splendens based on the nucleotide sequence of internal transcribed spacer 2 of nuclear ribosomal DNA. Molecular Ecology 8: 1037-1042.
12. Clement M, Posada D, Crandall KA. 2000. TCS: a computer program to estimate gene genealogies. Molecular Ecology 9: 1657-1660.
13. Crum HA. 1972. The geographic origins of the mosses of North America's eastern deciduous forests. Journal of the Hattori Botanical Laboratory 35: 269-298.
14. Donnelly P, Tavaré S. 1995. Coalescents and genealogical structure under neutrality. Annual Review of Genetics 29: 410-421.
15. Doyle JJ, Doyle JL. 1987. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochemical Bulletin 19: 11-15.
16. Dyke AS, Andrews JT, Clarke PU, England JH, Miller GH, Shaw J, Veillette JJ. 2002. The Laurentide and Innuitian ice sheets during the Last Glacial Maximum. Quaternary Science Review 21: 9-31.
17. Dyke AS, Prest VK. 1987. Late Wisconsinan and Holocene history of the Laurentide Ice Sheet. Géographie Physique et Quaternaire 41: 237-263.
18. Faegri K, Iversen, J. 1989. Textbook of pollen analysis. Chichester: John Wiley & Sons.
19. Fernald ML. 1925. Persistence of plants in non-glaciated areas of boreal America. Memoirs of the American Acadamy of Arts, new series 15: 239-342.
20. Gangulee HC. 1978. Mosses of eastern India and adjacent regions, Vol. 3. Calcutta. Published by the author.
21. Gibbs MJ, Armstrong JS, Gibbs AJ. 2000. Sister-scanning: a Monte Carlo procedure for assessing signals in recombinant sequences. Bioinformatics 16: 573-582.
22. Griffiths RC. 1980. Lines of descent in the diffusion approximation of neutral Wright-Fisher models. Theoretical Population Biology 17: 37-50.
23. Harding RM 1996. New phylogenies: an introductory look at the coalescent. In: Harvey PH, Leigh Brown AJ, Maynard Smith J, Nee S, eds. New uses for new phylogenies. Oxford: Oxford University Press, 15-22.
24. Hewitt GM. 1989. The subdivision of species by hybrid zones. In: Otte D, Endler J. eds. Speciation and its consequences. Sunderland, MA: Sinauer, 85-110.
25. Hewitt GM. 1999. Post-glacial re-colonisation of European biota. Biological Journal of the Linnean Society 68: 87-112.
26. Hewitt GM. 2000. The genetic legacy of the Quaternary ice ages. Nature 405: 907-913.
27. Hofmann H. 1998. A monograph of the genus Homalothecium (Brachytheciaceae, Musci). Lindbergia 23: 119-159.
28. Holdregger R, Abbot RJ. 2003. Phylogeography of the arctic-alpine Saxifraga oppositifolia (Saxifragaceae) and some related taxa based on cpDNA and ITS sequence variation. American Journal of Botany 90: 931-936.
29. Hudson RR, Coyne, JA. 2002. Mathematical consequences of the genealogical species concept. Evolution 56: 1557-1565.
30. Hultén E. 1937. Outline of the history of arctic and boreal biota during the Quaternary period. New York: L.J. Cramer.
31. Ibrahim K, Nichols RA, Hewitt GM. 1996. Spatial pattern of genetic variation generated by different forms of dispersal during range expansion. Heredity 77: 282-291.
32. Ignatov MS, Huttunen S. 2002. Brachytheciaceae (Bryophyta) - a family of sibling genera. Arctoa 11: 245-296.
33. Jaarola M, Tegelstrom H, Fredga K. 1999. Colonization history in Fennoscandian rodents. Biological Journal of the Linnean Society 68: 113-127.
34. Kimura M. 1980. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. Journal of Molecular Evolution 10: 111-120.
35. King RA, Ferris C. 1998. Chloroplast DNA phylogeography of Alnus glutinosa (L.) Gaertn. Molecular Ecology 1: 1157-1161.
36. Knowles LL. 2004. The burgeoning field of statistical phylogeography. Journal of Evolutionary Biology 17: 1-10.
37. Kropf M, Kadereit JW, Comes HP. 2002. Late Quaternary distributional stasis of the submediterranean mountain plant Anthyllis montana L. (Fabaceae) inferred from ITS sequences and amplified fragment length polymorphism markers. Molecular Ecology 11: 447-463.
38. Lischke H, Lotter AF, Fischlin A. 2002. Untangling a Holocene pollen record with forest model simulations and independent climate data. Ecological Modelling 150: 1-21.
39. Lunt DH, Ibrahim KM, Hewitt GM. 1998. MtDNA and post-glacial patterns of subdivision in the meadow grasshopper Chorthippus parallelus. Heredity 80: 63-641.
40. Martin D, Rybicki E. 2000. RDP: detection of recombination amongst aligned sequences. Bioinformatics 16: 562-563.
41. Martin D, Williamson C, Posada D. 2005. RDP2: recombination detection and analysis from sequence alignments. Bioinformatics 21: 260-262.
42. McDaniel SF, Shaw AJ. 2003. Phylogeographic structure and cryptic speciation in the trans-Antarctic moss Pyrrhobryum mnioides. Evolution 57: 202-215.
43. Miles CJ, Longton RE. 1990. The role of spores in reproduction in mosses. Botanical Journal of the Linnean Society 104: 149-173.
44. Moore PD, Webb JA, Collinson ME. 1991. Pollen analysis. Oxford: Blackwell Scientific Publications.
45. Muñoz J. Felicisimo AM, Cabezas F, Burgaz AR, Martinez I. 2004. Wind as a long-distance dispersal vehicle in the Southern Hemisphere. Science 304: 1144-1147.
46. Nee S, Holmes EC, Rambaut A, Harvey PH. 1996. Inferring population history from molecular phylogenies. In: Harvey PH, Leigh Brown AJ, Maynard Smith J, Nee S, eds. New uses for new phylogenies. Oxford: Oxford University Press, 66-80.
47. Nichols RA, Hewitt GM. 1994. The genetic consequences of long distance dispersal during colonisation. Heredity 72: 312-317.
48. Nordborg M. 2001. Coalescent theory. In: Balding, DJ, Bishop M, Cannings C, eds. Handbook of statistical genetics. Chichester: Wiley, 179-212.
49. Olsen JL, Stam WT, Coyer JA, Reusch TBH, Billingham M, Boström C, Calvert E, Christie H, Granger S, La Lumière R, Milchakova N, Oudot-Le Sec M, Procaccini G, Sanjabi B, Serrão E, Veldsink J, Widdicombe S, Wylie-Echeverria S. 2004. North Atlantic phylogeography and large-scale population differentiation of the seagrass Zostera marina L. Molecular Ecology 13: 1923-1941.
50. Posada D, Crandall KA. 1998. Modeltest: testing the model of DNA substitution. Bioinformatics 14: 817-818.
51. Redfearn P, Wu J, Wu PC. 1986. Catalogue of the mosses of China. Annals of the Missouri Botanical Garden 73: 177-208.
52. Rosenberg NA. 2003. The shapes of neutral gene genealogies in two species: probabilities of monophyly, paraphyly and polyphyly in a coalescent model. Evolution 57: 1465-1477.
53. Schierup MH, Hein J. 2000a. Consequences of recombination on traditional phylogenetic analysis. Genetics 156: 879-891.
54. Schierup MH, Hein J. 2000b. Recombination and the molecular clock. Molecular Biology and Evolution 17: 1578-1579.
55. Schuster RM. 1984. Phytogeography of the bryophyta. In: Schuster RM, ed. New manual of bryology. Nichinan: Hattori Botanical Laboratory, 463-636.
56. Shaw AJ. 2000a. Molecular phylogeography and cryptic speciation in the mosses Mielichhoferia elongata and M. mielichhoferiana (Bryaceae). Molecular Ecology 9: 595-608.
57. Shaw AJ. 2000b. Population ecology, population genetics and microevolution. In: Shaw AJ, Goffinet B, eds. Bryophyte biology. Cambridge: Cambridge University Press, 369-402.
58. Swofford, DL. 1998. PAUP*. Phylogenetic analysis using parsimony (and other methods), Version 4. Sunderland, MA: Sinauer.
59. Taberlet P, Fumagalli L, Wust-Saucy AJ, Cossons JF. 1998. Comparative phylogeography and post-glacial colonization routes in Europe. Molecular Ecology 7: 453-464.
60. Tajima F. 1983. Evolutionary relationships of DNA sequences in finite populations. Genetics 105: 437-460.
61. Tavaré S. 1984. Line-of-descent and genealogical processes, and their applications in population genetic models. Theoretical Population Biology 26: 119-164.
62. Vargas P. 2003. Molecular evidence for multiple diversification patterns of alpine plants in Mediterranean Europe. Taxon 52: 463-476.
63. Webb P, Bartlein PJ. 1992. Global changes during the last 3 million years: climate controls and biotic responses. Annual Review of Ecology and Systematics 23: 141-173.
64. Wei X-X, Wang X-Q, Hong D-Y. 2003. Marked intragenomic heterogeneity and geographical differentiation of nrDNA ITS in Larix potaninii (Pinaceae). Journal of Molecular Evolution 57: 623-635.
65. Williams JW, Post DM, Cwynar LC, Lotter AF, Levesque AJ. 2002. Rapid and widespread vegetation response to past climate change in the North Atlantic region. Geology 30: 971-974.
66. Wyatt R, Stoneburner A, Odrzykoski IJ. 1989. Bryophyte isozymes: systematic and evolutionary implications. In: Soltis DE, Soltis PM, eds. Isozymes in plant biology. Portland, OH: Dioscorides Press, 221-234.
67. Yu Z. 2003. Late Quaternary dynamics of tundra and forest vegetation in the southern Niagara escarpment, Ontario. New Phytologist 157: 365-390.