Analysis of genetic diversity in the endangered tropical tree species Hagenia abyssinica using ISSR markers

Genetic Resources and Crop Evolution

Volumn 54, Issue 5, 2007, Pages 947-958

  Feyissa, Tileye ^a,b   Nybom, Hilde ^b   Bartish, Igor V ^c   Welander, Margareta ^b  

^a ADDIS ABABA UNIVERSITY   (Ethiopia)

^b SWEDISH UNIVERSITY OF AGRICULTURAL SCIENCES   (Sweden)

^c SWEDISH MUSEUM OF NATURAL HISTORY   (Sweden)

Author keywords

DNA marker; Genetic diversity; Hagenia abyssinica; ISSR; Kosso

Indexed keywords

ANGIOSPERM; AUTOCORRELATION; CLUSTER ANALYSIS; DICOTYLEDON; ENDANGERED SPECIES; GENE FLOW; GENETIC MARKER; GENETIC VARIATION; POLYMORPHISM; PRINCIPAL COMPONENT ANALYSIS; RELATEDNESS; SPECIES CONSERVATION; SPECIES DIVERSITY;

AFRICA; EAST AFRICA; ETHIOPIA; SUB-SAHARAN AFRICA;

HAGENIA ABYSSINICA;

EID: 34447128797     PISSN: 09259864     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10722-006-9155-8     Document Type: Article

References (40)

1. Abegaz BM, Ngadjui BT, Bezabih M, Mdee LK (1999) Novel natural products from marketed plants of eastern and southern Africa. Pure Appl Chem 71:919-926
2. Aga E, Bryngelsson T, Bekele E, Salomon B (2003) Genetic diversity of forest arabica coffee trees (Coffea arabica L.) in Ethiopia as revealed by random amplified polymorphic DNA (RAPD) analysis. Hereditas 138:36-46
3. Allaye Kelly B, Hardy OJ, Bouvet J-M (2004) Temporal and spatial genetic structure in Vitellaria paradoxa (shea tree) in an agroforestry system in southern Mali. Mol Ecol 13:1231-1240
4. Bartish IV, Jeppsson N, Bartish GI, Lu R, Nybom H (2000) Inter- and intraspecific genetic variation in Hippophae (Elaeagnaceae) investigated by RAPD markers. Plant Syst Evol 225:85-101
5. Bhat KV, Babrekar PP, Lakhanpaul S (1999) Study of genetic diversity in Indian and exotic sesame (Sesamum indicum L.) germplasm using random amplified polymorphic DNA (RAPD) markers. Eupytica 110:21-33
6. Birmeta G, Nybom H, Bekele E (2004) Distinction between wild and cultivated enset (Ensete ventricosum) gene pools in Ethiopia using RAPD markers. Hereditas 140:139-148
7. Chase MW, Hills HH (1991) Silica gel: an ideal material for field preservation of leaf samples for DNA studies. Taxon 40:215-220
8. 13C natural abundance of soils. Ambio 29:83-89
9. Feyissa T, Welander M, Negash L (2005a) Micropropagation of Hagenia abyssinica: a multipurpose tree. Plant Cell Tissue Organ Cult 80:119-127
10. Feyissa T, Welander M, Negash L (2005b) In vitro regeneration of Hagenia abyssinica (Bruce) JF Gmel. (Rosaceae) from leaf explants. Plant Cell Rep 24:392-400
11. Friis I (1992) Forest and forest trees of northeast tropical Africa. Their natural habitats and distribution patterns in Ethiopia, Djibouti and Somalia. Her Majesty's Stationary Office, London
12. Gupta M, Chyi Y-S, Romero-Severson J, Owen JL (1994) Amplification of DNA markers from evolutionarily diverse genomes using single primers of simple-sequence repeats. Theor Appl Genet 89:998-1006
13. Gupta PK, Varshney RK (2000) The development and use of microsatellite markers for genetic analysis and plant breeding with emphasis on bread wheat. Euphytica 113:163-185
14. Hamrick JL, Godt MJW (1989) Allozyme diversity in plant species. In: Brown HD, Clegg MT, Kahler AL, Weir BS (eds) Plant population genetics, breeding, and genetic resources. Sinauer Associates Inc., Sunderland, pp 43-63
15. Hedberg O (1989) Flora of Ethiopia, Pittosporaceae to Araliaceae. In: Hedberg I, Edwards S (eds) Rosaceae, vol. 3. Addis Ababa University, Addis Ababa, pp 1-659
16. Hollingsworth PM, Dawson IK, Goodall-Copestake WP, Richardson JE, Weber JC, Sotelo Montes C, Pennington T (2005) Do farmers reduce genetic diversity when they domesticate tropical trees? A case study from Amazonia. Mol Ecol 14:497-501
17. King LM, Schaal BA (1989) Ribosomal-DNA variation and distribution in Rudbeckia missouriensis. Evolution 43:1117-1119
18. Lounasmaa M, Widen C-J, Huhtikangas A (1973) Phloroglucinol derivatives of Hagenia abyssinica. Phytochemistry 12:2017-2025
19. Lounasmaa M, Widen C-J, Huhtikangas A (1974) Phloroglucinol derivatives of Hagenia abyssinica II. The structure determination of kosotoxin and protokosin. Acta Chem Scand B 28:1200-1208
20. Lowe AJ, Boshier D, Ward M, Bacles CFE, Navarro C (2005) Genetic resource impacts of habitat loss and degradation; reconciling empirical evidence and predicted theory for neotropical trees. Heredity 95:255-273
21. Moreno S, Martin JP, Ortiz JM (1998) Inter-simple sequence repeats PCR for characterization of closely related grapevine germplasm. Euphytica 101:117-125
22. Negash L (1995) Indigenous trees of Ethiopia: Biology, uses and propagation techniques. SLU Reprocentralen, Umeå
23. Nei M (1973) Analysis of genetic diversity in subdivided populations (population structure/genetic variability/heterozygosity/gene differentiation). Proc Natl Acad Sci USA 70:3321-3323
24. Nei M (1977) F-statistics and analysis of gene diversity in subdivided populations. Ann Hum Genet 41:225-233
25. Nybom H (2004) Comparison of different nuclear DNA markers for estimating intraspecific genetic diversity in plants. Mol Ecol 13:1143-1155
26. Nybom H, Bartish IV (2000) Effects of life history traits and sampling strategies on genetic diversity estimates obtained with RAPD markers in plants. Persp Plant Ecol Evol Syst 3:93-114
27. Nybom H, Werlemark G, Olsson ÅME (2001) Between- and within population diversity in dogrose species. Acta Hort 546:139-144
28. Oden NL, Sokal RR (1986) Directional autocorrelation: an extension of spatial correlograms to two dimensions. Syst Zool 35: 608-617
29. Reddy MP, Sarla N, Siddiq EA (2002) Inter simple sequence repeat (ISSR) polymorphism and its application in plant breeding. Euphytica 128:9-17
30. Rohlf FJ (2000) NTSYS-pc, Numerical Taxonomy and Multivariate Analysis System, Version 2.1. Exeter Software, New York
31. Semagn K, Stedje B, Björnstad A (2001) Analysis of genetic diversity and structure in Ethiopean populations of Phytolacca dodecandra using RAPD. Hereditas 135:51-60
32. Slatkin M (1993) Isolation by distance in equilibrium and non-equilibrium populations. Evolution 47:264-279
33. Staub JE, Serquen FC, Gupta M (1996) Genetic markers, map construction, and their application in plant breeding. HortScience 31:729-739
34. Taddese G (2001) Land degradation: a challenge to Ethiopia. Env Manag 27:815-824
35. Wang M, Oppedijk BJ, Lu X, Duijn BV, Schilperoort RA (1996) Apoptosis in barley aleurone during germination and its inhibition by abscisic acid. Plant Mol Biol 32: 1125-1134
36. Wang Z, Weber JL, Zhong G, Tanksley SD (1994) Survey of plant short tandem DNA repeats. Theor Appl Genet 88:1-6
37. Weising K, Nybom H, Wolf K, Kahl G (2005) DNA fingerprinting in plants: principles, methods and applications. CRC Press, Boca Raton USA
38. Woldemariam TZ, Fell AF, Linley PA, Bibby MC, Phillips RM (1992) Evaluation of the anti-tumour action and acute toxicity of kosins from Hagenia abyssinica. J Pharm Biomed Anal 10:555-560
39. Yeh FC, Yang RC, Boyle TJ, Ye ZH, Mao JX (1999) POPGENE 1.31, The user friendly Shareware for population genetic analysis. Molecular Biology and Biotechnology Centre University of Alberta, Edmonton
40. Zietkiewicz E, Rafalski A, Labuda D (1994) Genomic fingerprinting by simple sequence repeat (SSR)-anchored polymerase chain reaction amplification. Genomics 20:176-183