Responding to Directional Cues: A Tale of Two Cells

IEEE Control Systems

Volumn 24, Issue 4, 2004, Pages 77-90

  Paliwal, Saurabh ^a   Ma, Lan ^b   Krishnan, J ^a   Levchenko, Andre ^a   Iglesias, Pablo A ^a  

^a JOHNS HOPKINS UNIVERSITY   (United States)

^b IBM T J WATSON RESEARCH CENTER   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BIOCHEMISTRY; BIOLOGY; CELLS; MATHEMATICAL MODELS; MICROORGANISMS; SIGNAL PROCESSING;

BIOCHEMICAL SIGNALING PATHWAYS; CHEMOTAXIS; GRADIENT SENSING;

SYSTEMS SCIENCE;

EID: 3442879827     PISSN: 1066033X     EISSN: None     Source Type: Journal    
DOI: 10.1109/MCS.2004.1316655     Document Type: Article

References (16)

1. H. Ma and A.-P. Zeng, “Reconstruction of metabolic networks from genome data and analysis oftheir global structure for various organisms,” Bioinformatics, vol. 19, no. 2, pp. 270-277, 2003.
2. I. Famili and B. Palsson, “Systemic metabolic reactions are obtained by singular value decomposition of genome-scale stoichiometric matrices,” J. Theoret. Biol., vol. 224, no. 1, pp. 87-96, 2003.
3. J. Edwards and P. Palsson, “The E. colimg1655 in silico metabolic genotype: Its definition, characteristics, and capabilities,” Proc. Nat. Acad. Sci., vol. 97, no. 10, pp. 5528-5533, 2000.
4. A. Goldbeter, “Computational approaches to cellular rhythms,” Nature, vol. 420, no. 6912, pp. 238-245, 2002.
5. J. Ferrell, “Self-perpetuating states in signal transduction: Positive feedback, double-negative feedback and bistability,” Current Opin. Chem. Biol., vol. 6, no. 2, pp. 140-148, 2002.
6. A. Goldbeter, “A minimal cascade model for the mitotic oscillator involving cyclin and cdc2 kinase,” Proc. Nat. Acad. Sci., vol. 88, no. 20, pp. 9107-9111, 1991.
7. M. Borisuk and J. Tyson, “Bifurcation analysis of a model of mitotic control in frog eggs,” J. Theoret. Biol., vol. 195, no. 1, pp. 69-85, 1998.
8. M. Morohashi, A. Winn, M. Borisuk, H. Bolouri, J. Doyle, and H. Kitano, “Robustness as a measure of plausibility of biochemical networks,” J. Theoret. Biol., vol. 216, no. 1, pp. 19-30, 2002.
9. J. Pomerening, E. Sontag, and J. Ferrell, “Building a cell cycle oscillator: Hysteresis and bistability in the activation of cdc2,” Nat. Cell Biol., vol. 5, no. 4, pp. 346-351, 2003.
10. B. Novak and J. Tyson, “Modeling the controls of the eukaryotic cell cycle,” Biochem. Soc. Trans., vol. 31, no. 6, pp. 1526-1529, 2003.
11. E. Bristol, “On a new measure of interactions for multivariable process control,” IEEE Trans. Automat. Contr., vol. AC-11, no. 1, pp. 133-134, 1966.
12. M. Hovd and S. Skogestad, “Simple frequency dependent tools for control system analysis, structure selection and design,” Automatica, vol. 28, no. 5, pp. 989-996, 1992.
13. W. Shah, J. Moore, K. Chen, A. Lassaletta, C. Yi, J. Tyson, and J.C. Sible, “Hysteresis drives cell cycle transitions in xenopus laevis egg extracts,” Proc. Nat. Acad. Sci., vol. 100, no. 3, pp. 975-980, 2003.
14. B. Hess and A. Boiteux, “Oscillations in biochemical systems,” Ber. Bunsenges. Phys. Chem., vol. 84, no. 4, pp. 346-351, 1980.
15. D. Lang, D. Matthews, J. Peto, and R. Turner, “Cyclic oscillations of basal plasma glucose and insulin concentrations in human beings,” New Eng. J. Med., vol. 301, no. 19, pp. 1023-1027, 1979.
16. J. Wolf, J. Passarge, O. Somsen, J. Snoep, R. Heinrich, and H. Westerhoff, “Transduction of intracellular and intercellular dynamics in yeast glycolytic oscillations,” Biophys. J., vol. 78, no. 3, pp. 1145-1153, 2000.