Molecular phylogenetic analysis of the infraspecific taxa of Erigeron thunbergii A. Gray distributed in ultramafic rock sites

Plant Species Biology

Volumn 22, Issue 2, 2007, Pages 107-115

  Kawase, Daiju ^a   Yumoto, Takakazu ^b   Hayashi, Kazuhiko ^c   Sato, Ken ^d  

^a KYOTO UNIVERSITY   (Japan)

^b RESEARCH INSTITUTE FOR HUMANITY AND NATURE   (Japan)

^c OSAKA GAKUIN UNIVERSITY   (Japan)

^d HOKKAI GAKUEN UNIVERSITY   (Japan)

Author keywords

Erigeron thunbergii; Infraspecific variability; Internal transcribed spacer; Phylogeny; Serpentine plant

Indexed keywords

ERIGERON;

EID: 34347389220     PISSN: 0913557X     EISSN: 14421984     Source Type: Journal    
DOI: 10.1111/j.1442-1984.2007.00182.x     Document Type: Article

References (33)

1. Berglund A. B. N., Saura A. Westerbergh A. (2001) Genetic differentiation of a polyploid plant on ultramafic soils in Fennoscandia. South African Journal of Science 97 : 533 535.
2. Berglund A. B. N., Dahlgren S. Westerbergh A. (2004) Evidence for parallel evolution and site-specific selection of serpentine tolerance in Cerastium alpinum during the colonization of Scandinavia. New Phytologist 161 : 199 209.
3. Felsenstein J. (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39 : 783 791.
4. Fujii N., Ueda K., Watano Y. Shimizu T. (1995) Infraspecific sequence variation in chloroplast DNA of Primula cunefolia Ledeb. Journal of PhytoGeography and Taxonomy 43 : 15 24.
5. Fujii N., Ueda K. Shimizu T. (1996) Infraspecific sequence variation of chloroplast DNA in Japanese alpine plants. Journal of PhytoGeography and Taxonomy 44 : 72 81.
6. Fujii N., Ueda K., Watano Y. Shimizu T. (1997) Intraspecific sequence variation of chloroplast DNA in Pedicularis chamissonis Steven (Scrophulariaceae) and geographic structuring of the Japaneses 'Alpine' plants. Journal of Plant Research 110 : 195 207.
7. Horie K. (2000) Distribution of ultrabasicolous plants in Hokkaido (in Japansese). Journal of PhytoGeography and Taxonomy 48 : 79 85.
8. Johnston W. R. Proctor J. (1981) Growth of serpentine and non-ultramafic races of Festuca Rubra in solutions simulating the chemical conditions in a toxic serpentine soil. Journal of Ecology 69 : 855 869.
9. Kimura M. (1980) A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. Journal of Molecular Evolution 16 : 111 120.
10. Kitamura S. (1950) Adaptation and isolation on the serpentine areas. Acta Phytotaxonomica et Geobotanica 12 : 178 185. (In Japanese.)
11. Mengoni A., Baker A. J. M., Bazzicalupo M. et al. (2003) Evolutionary dynamics of nickel hyperaccumulation in Alyssum revealed by its nrDNA analysis. New Phytologist 159 : 601 699.
12. Mizuno N. Nosaka S. (1992) The distribution and extent of serpentinized areas in Japan. In: Roberts B. A. Proctor J. (eds). The Ecology of Areas with Serpentinized Rocks. A World View. Kluwer Academic Publishers, Dordrecht, pp. 271 311.
13. Nishikawa T. Sato K. (2003) Chromosome numbers of Erigeron miyabeanus Tatew. & Kitam. (Asteraceae) and the allied taxa from Hokkaido, northern Japan. Bulletin of the National Science Museum 29 : 145 148.
14. Noyes R. S. (2000) Biogeographical and evolutionary insights on Erigeron and allies (Asteraceae) from ITS sequence data. Plant Systematics and Evolution 220 : 93 114.
15. Proctor J. Woodell S. R. I. (1975) The ecology of serpentine soils. Advances in Ecological Research 9 : 255 366.
16. Robinson B. H., Brooks R. R., Kirkman J. H., Gregg P. E. H. Varela A. H. (1997) Edaphic influences on a New Zealand ultramafic (''serpentine'′) flora: a statistical approach. Plant and Soil 188 : 11 20.
17. Rune O. (1953) Plant life on serpentine and related rocks in north Sweden. Acta Phytotaxonomica et Geobotanica 31 : 1 139.
18. Sang T., Crawford D. J. Stuessy T. F. (1997) Chloroplast DNA phylogeny, reticulate evolution, and biogeography of Paeonia (Paeoniaceae). American Journal of Botany 84 : 1120 1136.
19. Stevanović V., Tan K. Itarou G. (2003) Distribution of the endemic Balkan flora on serpentine I - obligate serpentine endemics. Plant Systematics and Evolution 242 : 149 170.
20. Swofford D. L. (2000) Paup. Phylogenetic Analysis Using Parsimony (and Other Methods), Version 4. Sinauer Associates, Sunderland.
21. Taberlet P., Gielly L., Pautou G. Bouvet J. (1991) Universal primers for amplification of three non-coding regions of chloroplast DNA. Plant Molecular Biology 17 : 1105 1109.
22. Takahashi H. (1996) Material for phytogeography of vascular plants in the Kuril Islands. Acta Phytotaxonomica et Geobotanica 47 : 271 283.
23. Takahashi H. (2005) Migration routes of northern plants - Sakhalin and the Kuris. Bunrui 5 : 89 97. (In Japanese.)
24. Takahashi H., Barkalov V. Y., Gage S. Zhuravlev Y. N. (1997) A preliminary study of the flora of Chirpoi, Kuril Islands. Acta Phytotaxonomica et Geobotanica 48 : 31 42.
25. Tatewaki M. (1933) Alipine flora of Mt. Horo-nupuri, Kitakami range, Hokkaido, Japan. Acta Phytotaxonomica et Geobotanica 2 : 86 92.
26. Tatewaki M. (1963) Alpine plants in Hokkaido. Science Reports of the Tohoku University, Series 4. Biology 29 : 165 188.
27. Tatewaki M. (1967) Distribution of alpine plants in northern Japan. In: Wright H. E. Osburn W. H. (eds). Arctic and Alpine Environments. Indiana University Press, Bloomington, pp. 119 136.
28. Thompson J. D., Higgins D. J. Gibson T. J. (1994) ClustalW: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Research 22 : 4673 4680.
29. Toyokuni H. (1955) On the ultrabasicosaxicolous flora of Hokkaido, Japan. Hokuriku Journal of Botany 4 : 97 101.
30. Watanabe S. (1971) Phytogeographical studies of alpine plants (vascular plants) on the Hidaki-Yubari Rangee. Memoirs of the National Science Museum 4 : 95 126. (In Japanese.)
31. Westerbergh A. (1994) Serpentine and non-serpentine Silene dioica plants do not differ in nickel tolerance. Plant and Soil 167 : 297 303.
32. Westerbergh A. Saura A. (1992) The effect of serpentine on the population structure of Silene dioica (Caryophyllaceae). Evolution 46 : 1537 1548.
33. White T. J., Bruns T., Lee S. Taylor J. (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis M. A., Gelfang D. H., Sninsky J. J. White T. J. (eds). PCR Protocols: A Guide to Methods and Applications. Academic Press, San Diego, pp. 315 322.