Mitochondrial phylogeography and demographic history of the Vicũa: Implications for conservation

Heredity

Volumn 99, Issue 1, 2007, Pages 70-80

  Marin J C ^a,b   Casey, C S ^c   Kadwell, M ^c   Yaya, K ^d   Hoces, D ^d   Olazabal, J ^d,e   Rosadio, R ^d,e   Rodriguez, J ^f   Spotorno, A ^b   Bruford, M W ^c   Wheeler, J C ^d  

^a UNIVERSIDAD DEL BÍO BÍO   (Chile)

^b UNIVERSITY OF CHILE   (Chile)

^c CARDIFF UNIVERSITY   (United Kingdom)

^d c o CONOPA Instituto de Investigación y Desarrollo de Camélidos Sudamericanos   (Peru)

^e UNIVERSIDAD NACIONAL MAYOR DE SAN MARCOS   (Peru)

^f NONE

Author keywords

D loop; Dry diagonal; mtDNA; Populations; Subspecies; Vicugna vicugna

Indexed keywords

MITOCHONDRIAL DNA;

ANTHROPOGENIC EFFECT; DEMOGRAPHIC HISTORY; EVOLUTION; GENETIC VARIATION; MITOCHONDRIAL DNA; MITOCHONDRION; PHYLOGEOGRAPHY; PLEISTOCENE; POPULATION DISTRIBUTION; POPULATION STRUCTURE; RUMINANT;

ANIMAL; ARTICLE; ARTIODACTYLA; CLASSIFICATION; DNA SEQUENCE; GENETIC VARIABILITY; GENETICS; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHYLOGENY; SPECIES EXTINCTION;

ANIMALS; BASE SEQUENCE; CAMELIDS, NEW WORLD; DNA, MITOCHONDRIAL; EXTINCTION, BIOLOGICAL; MOLECULAR SEQUENCE DATA; PHYLOGENY; SEQUENCE ANALYSIS, DNA; VARIATION (GENETICS);

ANDES; ARGENTINA; CHILE; PERU; SOUTH AMERICA;

VICUGNA VICUGNA; VICUGNA VICUGNA MENSALIS; VICUGNA VICUGNA VICUGNA;

EID: 34347358519     PISSN: 0018067X     EISSN: 13652540     Source Type: Journal    
DOI: 10.1038/sj.hdy.6800966     Document Type: Article

References (52)

1. Ammann C, Jenny B, Kammer K, Messerli B (2001). Late Quaternary Glacier response to humidity changes in the arid Andes of Chile (18-29°S). Palaeogeogr Palaeoclimatol Palaeoecol 172: 313-326.
2. Bruford MW, Hanotte O, Brookfield JFY, Burke T (1998). Single and multilocus DNA fingerprinting. In: AR Hoelzel (ed). Molecular Genetic Analysis of Populations: A Practical Approach, 2nd edn. Oxford University Press: Oxford.
3. Clapperton CM (1993). The Quaternary Geology and Geomorphology of South America. Elsevier: Amsterdam.
4. Clayton JD, Clapperton CM (1997). Broad synchrony of a late glacial glacier advance and the highstrand of paleolake Tauca in the Bolivian Altiplano. J Quaternary Sci 12: 159-182.
5. Clement M, Posada D, Crandall K (2000). TCS: a computer program to estimate gene genealogies. Mol Ecol 9: 1657-1659.
6. Dillehay TD (2000). The Settlement of the Americas. Basic Books, Perseus Book Group: New York.
7. Excoffier L (2004). Patterns of DNA sequence diversity and genetic structure after a range expansion: lessons from the infinite-island model. Mol Ecol 13: 853-864.
8. Excoffier L, Laval G, Schneider S (2005). Arlequin ver. 3.0: an integrated software package for population genetics data analysis. Evolutionary Bioinformatics Online 1: 47-50.
9. Fu YX (1996). New statistical tests of neutrality of mutations. Genetics 143: 557-570.
10. Grimwood IR (1969). Notes on the distribution and status of some Peruvian mammals 1968. American Committee for International Wildlife Protection. New York Zoological Society Special Publication No. 21: New York.
11. Harrison JA (1979). Revision of the Camelinae (Artiodactyla Tylopoda) and description of the new genus alforjas. Paleontol Contributions Univ Kansas 95: 1-20.
12. Hoffstetter R (1986). High Andean mammalian faunas during the Plio-Pleistocene. In: Vuilleumier F, Monasterio M (eds). High Altitude Tropical Biogeography. Oxford University Press: Oxford. pp 218-245.
13. Jungius H (1971). The Vicuña in Bolivia: the status of an endangered species and recommendations for its conservation. Zeitschrift für Säugetierkunde 36: 129-146.
14. Kadwell M, Fernández M, Stanley HF, Baldi R, Wheeler JC, Rosadio R et al. (2001). Genetic analysis reveals the wild ancestors of the llama and alpaca. Proc Royal Soc London B 268: 2575-2584.
15. Koford CB (1957). The Vicuña and the Puna. Ecol Monogr 27: 153-219.
16. Kuhner MK, Yamato J, Felsenstein J (1998). Maximum likelihood estimation of population growth rates based on the coalescent. Genetics 149: 429-434.
17. Kull C, Grosjean M, Veit H (2002). Modeling modern and late Pleistocene glacio-climatological conditions in the North Chilean Andes (29-30°S). Climatic Change 52: 359-381.
18. Lin Z, Nomura O, Hayashi T, Wada Y, Yasue H (2001). Characterization of a SINE species from vicuna and its distribution in animal species including the family Camelidae. Mamm Genome 12: 305-308.
19. MacFadden BJ, Siles O, Zeitler P, Johnson NM, Campbell KE. (1983). Magnetic polarity stratigraphy of the middle Pleistocene (Ensenadan) Tarija formation of Southern Bolivia. Quat Res 19: 172-187.
20. Madison WP, Knowles LL (2006). Inferring phylogeny despite incomplete lineage sorting. Syst Biol 55: 21-30.
21. Marín JC (2004) Filogenia molecular, filogeografía y domesticación de camelidos sudamericanos (ARTIODACTYLA: CAMELIDAE). PhD thesis, Universidad de Chile, Santiago.
22. Menegaz AN, Goin FJ, Ortiz Jaureguizar E (1989). Analisis morfologico y morfometrico multivariado de los representantes follies y viventes del genero Lama (Artiodactyla, Camelidae). Sus implicancias sistematicas, biogeograficas, ecologicas y biocronologicas. Ameghiniana 26: 153-172.
23. Maté ML, Di Rocco F, Zambelli A, Vidal-Rioja L (2004). Mitochondrial DNA structure and organization of the control region of South American camelids. Mol Ecol Notes 4: 765-767.
24. Miller Jr GS (1924). A second instance of the development of rodent-like incisors in an artiodactyl. Proc United States Natl Museum 66: 1-4.
25. Molina GI (1782). Saggio Sulla Storia Naturale del Chile. Bologna, Tommaso d'Aquino, p 367.
26. Nami HG, Menegaz AN (1991). Cueva del Medio: aportes para el conocimiento de la diversidad faunística hacia el Pleistoceno-Holoceno en la Patagonia austral. Anales Instituto Patagónico Serie Ciencies Historicas 20: 117-132.
27. Norambuena MC, Paredes M (2003). Variabilidad y estructura genetica en dos poblaciones de Vicugna vicugna (Camelidae) from northern Chile. Rev Chil Hist Nat 76: 99-104.
28. Palma RE, Marín JC, Spotorno AE, Galaz JL (2001). Phylogenetic relationships among south american subspecies of camelids based on secuences of cytochrome b mitochondrial genes. In: Raunelli MGA (ed). EEAP publication No. 105, Göttingen, Germany 27-29 May 1999 Progress in South American Camelids Research. Wageningen Press: Göttingen, Alemania. pp 44-52.
29. Paulo OS, Jordan WC, Bruford MW, Nichols RA (2002). Using nested clade analysis to assess the history of colonization and the persistence of populations of an Iberian lizard. Mol Ecol 11: 809-819.
30. Posada D, Crandall KA (1998). MODELTEST: testing the model of DNA substitution. Bioinformatics 14: 817-818.
31. Prieto A, Canto J (1997). Presencia de un lamoide atipico en Cueva Lago Sofia 4 (Ultima Esperanza) y Tres Arroyos (Tierra del Fuego) Region de Magallanes, Chile. Anales Instituto Patagónico Serie Ciencies Historicas 25: 147-150.
32. Ray N, Currat M, Excoffier L (2003). Intra-deme molecular diversity in spatially expanding populations. Mol Biol Evol 20: 76-86.
33. Rozas J, Rozas R (1999). DnaSP version 3: an integrated program for molecular population genetics and molecular evolution analysis. Bioinformatics 15: 174-175.
34. Sarno RJ, Villalba L, Bonacic C, Gonzalez B, Zapata B, Mac Donald DW et al (2004). Phylogeography and subspecies assessment of vicunas in Chile and Bolivia utilizing mtDNA and microsatellite markers: implications for vicuna conservation and management. Conserv Genet 5: 89-102.
35. Schaschl H, Kaulfus D, Hammer S, Suchentrunk F (2003). Spatial patterns of mitochondrial and nuclear gene pools in chamois (Rupicapra r. rupicapra) from the Eastern Alps. Heredity 91: 125-135.
36. Schneider S, Roessli D, Excoffier L (2000). Arlequin ver. 2000: A Software for Population Genetics Data Analysis. Genetics and Biomety Laboratory: University of Geneva, Switzerland.
37. Sharma P, Elmore D, Dunne A, DeSilva SL, Vogt S (1995). Application of 35Cl surface exposure age dating to Central Andean glaciology and volcanology. American Geophysical Union Fall Meeting 2005, Abstracts.
38. Stanley HF, Kadwell M, Wheeler JC (1994). Molecular evolution and genetic diversity of the Camelidae. Proc Royal Soc London B 256: 1-6.
39. Swofford DL (2001). PAUP*. Phylogenetic analysis using parsimony (* and other methods). Version 4. Sinauer Associates: Sunderland, MA.
40. Tajima F (1989). Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123: 585-595.
41. Templeton AR, Routman E, Phillips CA (1995). Separating population structure from population history: a cladistic analysis of the geographical distribution of mitochondrial DNA haplotypes in the tiger salamander, Ambystoma tigrinum. Genetics 140: 767-782.
42. Thomas O (1917). Preliminary diagnosis of new mammals obtained by the Yale National Society Peruvian Expedition. Smithsonian Misc C 68: 1-3.
43. Thornback J, Jenkins M (eds). (1982). The IUCN Mammal Red Data Book. Unwin Brothers - Greshman Press: Surrey.
44. Tolley KA, Burger M, Turner AA, Matthee CA (2006). Biogeographic patterns and phylogeography of dwarf chameleons (Bradypodion) in an African biodiversity hotspot. Mol Ecol 15: 781-793.
45. Tserenbataa T, Ramey RR, Ryder OA, Quinn TW, Reading RP (2004). A population genetic comparison of argali sheep (Ovis ammon) in Mongolia using the ND5 gene of mitochondrial DNA; implications for conservation. Molr Ecol 13: 1333-1339.
46. Ubilla M (2004). Mammalian biostratigraphy of Pleistocene fluvial deposits in northern Uruguay, South America. Proc Geologist Assoc 115: 347-357.
47. Watterson GA (1975). On the number of segregating sites. Theor Popul Biol 7: 256-276.
48. Webb SD (1974). Pleistocene Llamas of Florida, with a brief review of the Lamini. In: Webb SD (ed). Pleistocene Mammals of Florida. The University Presses of Florida: Gainesville, pp 170-213.
49. Wheeler JC (1995). Evolution and present situation of the South American Camelidae. Biol J Linn Soc 54: 271-295.
50. Wheeler JC (2006). Historia Natural de la Vicuña. In: Vilá B (ed). Investigacion Conservacion y Manejo de Vicuñas. Proyecto MACS: Buenos Aires, Argentina. pp 25-36.
51. Wheeler JC, Hoces Roque D (1997). Community participation, sustainable use and vicuña conservation in Peru. Mt Res Dev 17: 283-287.
52. Wheeler JC, Pires-Ferreira E, Kaulicke P (1976). Preceramic animal utilization in the Central Peruvian Andes. Science 194: 483-490.