The significance of spoligotyping method in epidemiological investigations of tuberculosis;Znaczenie melody spoligotyping w epidemiologicznych dochodzeniach gruźlicy

Pneumonologia i Alergologia Polska

Volumn 75, Issue 1, 2007, Pages 22-31

  Augustynowicz Kopeć, Ewa ^a   Jagielski, Tomasz ^a   Kozińska, Monika ^a   Zabost, Anna ^a   Zwolska, Zofia ^a  

^a Immun Inst Gruzlicy i Chorob Pluc   (Poland)

Author keywords

Isoniazid resistance; Molecular epidemiology; Mycobacterium tuberculosis; Spoligotyping; Tuberculosis

Indexed keywords

ISONIAZID; TUBERCULOSTATIC AGENT;

ADULT; AGED; ARTICLE; BACTERIUM IDENTIFICATION; CLASSIFICATION; CLUSTER ANALYSIS; CONTACT EXAMINATION; DNA FINGERPRINTING; DRUG EFFECT; EPIDEMIOLOGY; EVALUATION; FACTUAL DATABASE; FEMALE; GENETIC MARKER; GENETICS; HUMAN; INTERSPERSED REPEAT; LUNG TUBERCULOSIS; MALE; METHODOLOGY; MICROBIOLOGY; MIDDLE AGED; MYCOBACTERIUM TUBERCULOSIS; POLAND; POLYMERASE CHAIN REACTION; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; SENSITIVITY AND SPECIFICITY; TUBERCULOSIS;

ADULT; AGED; AGED, 80 AND OVER; ANTITUBERCULAR AGENTS; BACTERIAL TYPING TECHNIQUES; CLUSTER ANALYSIS; CONTACT TRACING; DATABASES, FACTUAL; DNA FINGERPRINTING; EPIDEMIOLOGY, MOLECULAR; FEMALE; GENETIC MARKERS; HUMANS; INTERSPERSED REPETITIVE SEQUENCES; ISONIAZID; MALE; MIDDLE AGED; MYCOBACTERIUM TUBERCULOSIS; POLAND; POLYMERASE CHAIN REACTION; POLYMORPHISM, RESTRICTION FRAGMENT LENGTH; SENSITIVITY AND SPECIFICITY; TUBERCULOSIS, MULTIDRUG-RESISTANT; TUBERCULOSIS, PULMONARY;

EID: 34347347102     PISSN: 08677077     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (20)

1. Small P.M., Hopewell P.C., Singh S.P. i wsp. The epidemiology of tuberculosis in San Francisco: a population-based study using conventional and molecular methods. N. Engl. J. Med. 1994;330:1703-1709.
2. Weis S.E., Pogoda J.M., Yang Z. i wsp. Transmission dynamics of tuberculosis in Tarrant County, Teras. Am. J. Respir. Grit. Care Med. 2002; 166: 36-42.
3. Braden C.R., Templeton G.L., Stad W.W. i wsp. Retrospective detection of laboratory cross-contamination of Mycobacterium tuberculosis cultures with use of DNA fingerprint analysis. Clin. Infect. Dis. 1997; 24: 35-40.
4. Shafer R.W., Singh S.P., Larkin C., Small P.M. Exogenous reinfection with multidrug-resistant Mycobacterium tuberculosis in an immunocompetent patient. Tuber. Lung Dis. 1995; 76: 575-577.
5. Moström P., Gordon M., Sola C. i wsp. Methods used in molecular epidemiology of tuberculosis. Clin. Microbiol. Infect. 2002; 8: 694-704.
6. Hermans P.W.M., van Soolingen D., Bik E.M. i wsp. The insertion element IS987 from M. oovis BCG is located in a hot spot integration region for insertion elements in M. tuberculosis complex strains. Infect. Immun. 1991; 59: 2695-2705.
7. Kamerbeek J., Schouls L.M., Kolk A. i wsp. Simultaneous detection and strain differentiation of Mycobacterium tuberculosis for diagnosis and epidemiology. J. Clin. Microbiol. 1997; 35: 907-914.
8. Butler W.R., Floyd M.M., Silcox V. i wsp. (red.). Steering Committee, HPLC Users Group. Standardized method for HPLC identification of mycobacteria. Washington, D.C., U.S. Department of Health and Human Services 1996.
9. Zwolska Z., Augustynowicz-Kopec E., Klatt M. Pierwotna i nabyta lekoopornoéć pra̧tków gruźlicy w Polsce. Pneumonol. Alergol. Pol. 1999; 67: 536-545.
10. van Embden J.D.A., Cave M.D., Crawford J.T. i wsp. Strain identification of Mycobacterium tuberculosis by DNA finger-printing: recommendations for a standardized methodology. J. Clin. Microbiol. 1993; 31; 406-409.
11. Kotlowski R., Shamputa I.e., El Alla N.A. i wsp. PCR-basad genotyping of Mycobacterium tuberculosis with new GC-rich repeated sequences and IS6110 inverted repeats used as primers. J. Clin. Microbiol. 2004; 42: 372-377.
12. Gruft H., Johnson R., Claflin R., Loder A. Phage-typing and drug-resistance patterns as tools in mycobacterial epidemiology. Am. Rev. Respir. Dis. 1984; 130: 96-97.
13. Barnes P.F., Cave M.D. Molecular epidemiology of tuberculosis. N. Engl. J. Med. 2003; 349:1149-1136.
14. Niemann S., Richter E., Rüsch-Gerdes S. Stability of Mycobacterium tuberculosis IS6110 restriction fragment length polymorphism patterns and spoligotypes determined by analyzing serial isolates from patients with drug-resistant tuberculosis. J. Clin. Microbiol. 1999; 37: 409-412.
15. Kulkarni S., Sola Ch., Filliol I. i wsp. Spoligotyplng of Mycobacterium tuberculosis isolates from patients with pulmonary tuberculosis in Mumbai, India. Res. Microbiol. 2005; 156: 588-596.
16. Dale J.W., Brittain D., Cataldi A.A. i wsp, Spacer oligonucleotide typing of bacteria of the Mycobacterium tuberculosis complex: recommendations for standardised nomenclature. Int. J. Tuberc. Lung Dis. 2001; 3: 216-219.
17. Brudey K., Driscoll J.R., Rlgouts L. i wsp. Mycobacterium tuberculosis complex genetic diversity: mining the fourth International spoligotyping database (SpolDB4) for classification, population genetics and epidemiology. BMC Microbiology 2006; 6-23.
18. Gori A., Degli Esposti A., Bandera A. i wsp. Comparison between spoligotyping and IS6110 restriction fragment length polymorphisms in molecular genotyping analysis of Mycobacterium tuberculosis strains. Mol. Cell. Probes. 2005; 19: 236-244.
19. Kremer K., van Soolingen D., Frothingham R. i wsp. Comparison of methods based on different molecular epidemiological markers for typing of Mycobacterium tuberculosis complex strains: interlaboratory study of discriminatory power and reproducibility, J. Clin. Microbiol. 1999; 37: 2607-2618.
20. van Soolingen D. Molecular epidemiology of tuberculosis and other mycobacterial infections: main methodologies and achievements. J. Intern. Med. 2001: 249: 1-26.