A novel and ancient group of type l keratins with members in bichir, sturgeon and gar

Frontiers in Zoology

Volumn 4, Issue , 2007, Pages

  Schaffeld, Michael ^a   Haberkamp, Mark ^a   Schätzlein, Sonja ^b   Neumann, Sebastian ^a   Hunzinger, Christian ^c  

^a JOHANNES GUTENBERG UNIVERSITY   (Germany)

^b HANNOVER MEDICAL SCHOOL   (Germany)

^c MERCK KGAA   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

ACTINOPTERYGII; LAMPETRA AYRESII; PETROMYZONTIDAE; TELEOSTEI; VERTEBRATA;

EID: 34347257429     PISSN: None     EISSN: 17429994     Source Type: Journal    
DOI: 10.1186/1742-9994-4-16     Document Type: Article

References (40)

1. Hesse M, Magin TM, Weber K: Genes for intermediate filament proteins and the draft sequence of the human genome: novel keratin genes and a surprisingly high number of pseudogenes related to keratin genes 8 and 18. J Cell Sci 2001, 114:2569-2575.
2. Hesse M, Zimek A, Weber K, Magin TM: Comprehensive analysis of keratin gene clusters in humans and rodents. Eur J Cell Biol 2004, 83:19-26.
3. Rogers MA, Winter H, Langbein L, Bleiler R, Schweizer J: The human type I keratin gene family: characterization of new hair follicle specific members and evaluation of the chromosome 17q21.2 gene domain. Differentiation 2004, 72:527-540.
4. Rogers MA, Edler L, Winter H, Langbein L, Beckmann I, Schweizer J: Characterization of new members of the human type II keratin gene family and a general evaluation of the keratin gene domain on chromosome 1q13.13. J Invest Dermatol 2005, 124:536-544.
5. Zimek A, Stick R, Weber K: Genes coding for intermediate filament proteins: common features and unexpected differences in the genomes of humans and the teleost fish Fugu rubripes. J Cell Sci 2003, 116:2295-2302.
6. Zimek A, Weber K: Terrestrial vertebrates have two keratin gene clusters; striking differences in teleost fish. Eur J Cell Biol 2005, 84:623-635.
7. Krushna Padhi B, Akimenko MA, Ekker M: Independent expansion of the keratin gene family in teleostean fish and mammals: an insight from phylogenetic analysis and radiation hybrid mapping of keratin genes in zebrafish. Gene 2006, 368:37-45.
8. Schaffeld M, Markl J: Fish keratins. Methods Cell Biol 2004, 78:627-671.
9. Markl J, Franke WW: Localization of cytokeratins in tissues of the rainbow trout: fundamental differences in expression pattern between fish and higher vertebrates. Differentiation 1988, 39:97-122.
10. Markl J, Winter S, Franke WW: The catalog and the expression complexity of cytokeratins in a teleost fish, the rainbow trout. Eur J Cell Biol 1989, 50:1-16.
11. Markl J, Schechter N: Fish intermediate filament proteins in structure, function and evolution. Subcell Biochem 1998, 31:1-33.
12. Conrad M, Lemb K, Schubert T, Markl J: Biochemical identification and tissue-specific expression patterns of keratins in the zebrafish Danio rerio. Cell Tissue Res 1998, 293:195-205.
13. Schaffeld M, Löbbecke A, Lieb B, Markl J: Tracing keratin evolution: Catalog, expression patterns and primary structure of shark (Scyliorhinus stellaris) keratins. Eur J Cell Biol 1998, 77:69-80.
14. Schaffeld M, Haberkamp M, Braziulis E, Lieb B, Markl J: Type II keratin cDNAs from the rainbow trout: Implications for keratin evolution. Differentiation 2002, 70(6):292-299.
15. Schaffeld M, Höffling S, Haberkamp M, Conrad M, Markl J: Type I keratin cDNAs from the rainbow trout: independent radiation of keratins in fish. Differentiation 2002, 70(6):282-291.
16. Schaffeld M, Knappe M, Hunzinger C, Markl J: cDNA sequences of the authentic keratins 8 and 18 in zebrafish. Differentiation 2003, 71:73-82.
17. Schaffeld M, Höffling S, Markl J: Sequence, evolution and tissue expression patterns of an epidermal type I keratin from the shark Scyliorhinus stelloris. Eur J Cell Biol 2004, 83:359-368.
18. Schaffeld M, Bremer M, Hunzinger C, Markl J: Evolution of tissue-specific keratins as deduced from novel cDNA sequences of the lungfish Protofrterus aethiopicus. Eur J Cell Biol 2005, 84:363-377.
19. García DM, Bauer H, Dietz T, Schubert T, Markl J, Schaffeld M: Identification of keratins and analysis of their expression in carp and goldfish: comparison with the zebrafish and trout keratin catalog. Cell Tissue Res 2005, 322(2):245-56.
20. Herrmann H, Fouquet B, Franke WW: Expression of intermediate filament proteins during development of Xenopus laevis . I. cDNA clones encoding different forms of vimentin. Development 1989, 105:279-298.
21. Lazarides E: Intermediate filaments: a chemically heterogeneous, developmentally regulated class of proteins. Annu Rev Biochem 1982, 51:219-250.
22. Schaffeld M, Herrmann H, Schultess J, Markl J: Vimentin and desmin of a cartilaginous fish, the shark Scyliorhinus stellaris: Sequence, expression patterns and in vitro assembly. Eur J Cell Biol 2001, 80:692-702.
23. Schultess J: Molekulare Evolution der Intermediärfilament- Proteine des Flussneunauges Lampetra fluviatilis. In Phd thesis University of Mainz, Faculty of Biology; 2001.
24. Schultess J, Schaffeld M, Markl J: Intermediate filament proteins type I to III in the lamprey Lampetra fluviatilis: Searching for the origin of the IF protein evolution in vertebrates. Zoology 2000, 103(Suppl.III):51.
25. Schultess J, Schaffeld M, Markl J: Intermediate filament protein sequences of the cyclostome Lampetra fluviatilis. Biol Cell 2001, 93:235. (First Joint French-German Congress on Cell Biology)
26. Schultess J, Schaffeld M, Scheinert I, Markl J: Intermediate filament protein sequences of the cyclostome Lampetra fluviatilis. Zoology 2001. 104(Suppl.IV):36.
27. Zardoya R, Meyer A: Recent advances in the (molecular) phylogeny of vertebrates. Annu Rev Ecol Syst 2003, 34:311-338.
28. Schaffeld M, Schultess J: Genes coding for intermediate filament proteins closely related to the hagfish "thread keratins (TK)" alpha and gamma also exist in lamprey, teleosts and amphibians. Exp Cell Res 2006, 312:1447-1462.
29. Schaffeld M, Schultess J, Haberkamp M, Bremer M, Markl J: Intermediate Filament Protein Evolution in Fish: Sequences from lamprey, shark, bichir, sturgeon and trout. Biol Cell 2001, 93:235. (First Joint French-German Congress on Cell Biology)
30. Haberkamp M: Zur Evolution des Cytoskeletts beim Sibirischen Stör Acipenser baeri. In Phd thesis University of Mainz, Faculty of Biology; 2002.
31. Delsuc F, Brinkmann H, Chourrout D, Philippe H: Tunicates and not cephalochordates are the closest living relatives of vertebrates. Nature 2006, 439:965-8.
32. Chirgwin JM, Przybyla AE, MacDonald RJ, Rutter WJ: Isolation of biologically active ribonucleic acid from sources enriched in ribonuclease. Biochemistry 1979, 18:5294-5299.
33. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ: Basic local alignment search tool. J Mol Biol 1990, 215:403-410.
34. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG: The CLUSTAL X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 1997, 25:4876-4882.
35. Jones DT, Taylor WR, Thornton JM: The rapid generation of mutation data matrices from protein sequences. Comput Appl Biosci 1992, 8:275-282.
36. Felsenstein J: PHYLIP (phytogeny inference package). Version 3.6b. Edited by:. Distributed by the author, Department of Genetics, University of Washington, Seattle; 2004.
37. Felsenstein J: Confidence limits on phylogenies: an approach using the bootstrap. Evolution 1985, 39:783-791.
38. Guindon S, Gascuel O: A simple, fast, and accurate algorithm to estimate large phytogenies by maximum likelihood. Syst Biol 2003, 52:696-704.
39. Huelsenbeck JP, Ronquist F: MRBAYES: Bayesian inference of phylogenetic trees, Bioinformotics 2001, 17:754-755.
40. Page RDM: TREEVIEW: an application to display phylogenetic trees on personal computers. Comput Appl Biosci 1996, 12:357-358.