SCOPUS 정보 검색 플랫폼

Proceedings of the National Academy of Sciences of the United States of America

Volumn 104, Issue 20, 2007, Pages 8484-8489

Integrated network analysis identifies nitric oxide response networks and dihydroxyacid dehydratase as a crucial target in Escherichia coli

(5) Hyduke, Daniel R a Jarboe, Laura R a Tran, Linh M a Chou, Katherine J Y a Liao, James C a,b

a UNIVERSITY OF CALIFORNIA (United States)

b 5531 Boelter Hall ^* (United States)

Author keywords

Chemoinformatics; Systems biology

Indexed keywords

DIHYDROXYACID DEHYDRATASE; HYDROLYASE; NITRIC OXIDE; UNCLASSIFIED DRUG; IRON SULFUR PROTEIN; TRANSCRIPTION FACTOR;

AMINO ACID SYNTHESIS; ARTICLE; BACTERIAL GENE; BACTERIAL GROWTH; ESCHERICHIA COLI; GENE DELETION; GENE OVEREXPRESSION; NONHUMAN; PHENOTYPE; PRIORITY JOURNAL; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SYSTEMS BIOLOGY; ADAPTATION; BIOLOGICAL MODEL; DRUG EFFECT; ENZYMOLOGY; GENE EXPRESSION REGULATION; GENE REGULATORY NETWORK; GENETIC TRANSCRIPTION; GENETICS; METABOLISM;

BACTERIA (MICROORGANISMS); ESCHERICHIA COLI; MAMMALIA;

ADAPTATION, PHYSIOLOGICAL; ESCHERICHIA COLI; GENE EXPRESSION REGULATION, BACTERIAL; GENE REGULATORY NETWORKS; HYDRO-LYASES; IRON-SULFUR PROTEINS; MODELS, BIOLOGICAL; NITRIC OXIDE; PHENOTYPE; TRANSCRIPTION FACTORS; TRANSCRIPTION, GENETIC;

EID: 34347250494 PISSN: 00278424 EISSN: None Source Type: Journal
DOI: 10.1073/pnas.0610888104 Document Type: Article

Times cited : (127)

References (49)

1
- 0030937832
- MacMicking J, Xie QW, Nathan C (1997) Annu Rev Immunol 15:323-350.
- (1997) Annu Rev Immunol , vol.15 , pp. 323-350
- MacMicking, J.¹ Xie, Q.W.² Nathan, C.³

2
- 4844227764
- Fang FC (2004) Nat Rev Microbiol 2:820-832.
- (2004) Nat Rev Microbiol , vol.2 , pp. 820-832
- Fang, F.C.¹

3
- 0003764608
- Academic, San Diego
- Ignarro LJ (2000) Nitric Oxide: Biology and Pathobiology (Academic, San Diego).
- (2000) Nitric Oxide: Biology and Pathobiology
- Ignarro, L.J.¹

4
- 0037257199
- Soum E, Drapier JC (2003) J Biol Inorg Chem 8:226-232.
- (2003) J Biol Inorg Chem , vol.8 , pp. 226-232
- Soum, E.¹ Drapier, J.C.²

5
- 0036646484
- Cruz-Ramos H, Crack J, Wu G, Hughes MN, Scott C, Thomson AJ, Green J, Poole RK (2002) EMBO J 21:3235-3244.
- (2002) EMBO J , vol.21 , pp. 3235-3244
- Cruz-Ramos, H.¹ Crack, J.² Wu, G.³ Hughes, M.N.⁴ Scott, C.⁵ Thomson, A.J.⁶ Green, J.⁷ Poole, R.K.⁸

6
- 0034625165
- Ding H, Demple B (2000) Proc Natl Acad Sci USA 97:5146-5150.
- (2000) Proc Natl Acad Sci USA , vol.97 , pp. 5146-5150
- Ding, H.¹ Demple, B.²

7
- 0033526378
- Foster MW, Cowan JA (1999) J Am Chem Soc 121:4093-4100.
- (1999) J Am Chem Soc , vol.121 , pp. 4093-4100
- Foster, M.W.¹ Cowan, J.A.²

8
- 0022461970
- Drapier JC, Hibbs JB, Jr (1986) J Clin Invest 78:790-797.
- (1986) J Clin Invest , vol.78 , pp. 790-797
- Drapier, J.C.¹ Hibbs Jr, J.B.²

9
- 0024244657
- Hibbs JB, Jr, Taintor RR, Vavrin Z, Rachlin EM (1988) Biochem Biophys Res Commun 157:87-94.
- (1988) Biochem Biophys Res Commun , vol.157 , pp. 87-94
- Hibbs Jr, J.B.¹ Taintor, R.R.² Vavrin, Z.³ Rachlin, E.M.⁴

10
- 0025117611
- Lancaster JR, Jr, Hibbs JB, Jr (1990) Proc Natl Acad Sci USA 87:1223-1227.
- (1990) Proc Natl Acad Sci USA , vol.87 , pp. 1223-1227
- Lancaster Jr, J.R.¹ Hibbs Jr, J.B.²

11
- 0034680875
- Stevanin TM, Ioannidis N, Mills CE, Kim SO, Hughes MN, Poole RK (2000) J Biol Chem 275:35868-35875.
- (2000) J Biol Chem , vol.275 , pp. 35868-35875
- Stevanin, T.M.¹ Ioannidis, N.² Mills, C.E.³ Kim, S.O.⁴ Hughes, M.N.⁵ Poole, R.K.⁶

12
- 0036392146
- Butler C, Forte E, Maria Scandurra F, Arese M, Giuffre A, Greenwood C, Sarti P (2002) Biochem Biophys Res Commun 296:1272-1278.
- (2002) Biochem Biophys Res Commun , vol.296 , pp. 1272-1278
- Butler, C.¹ Forte, E.² Maria Scandurra, F.³ Arese, M.⁴ Giuffre, A.⁵ Greenwood, C.⁶ Sarti, P.⁷

13
- 4944233196
- Borisov VB, Forte E, Konstantinov AA, Poole RK, Sarti P, Giuffre A (2004) FEBS Lett 576:201-204.
- (2004) FEBS Lett , vol.576 , pp. 201-204
- Borisov, V.B.¹ Forte, E.² Konstantinov, A.A.³ Poole, R.K.⁴ Sarti, P.⁵ Giuffre, A.⁶

14
- 0037040921
- Gardner AM, Helmick RA, Gardner PR (2002) J Biol Chem 277:8172-8177.
- (2002) J Biol Chem , vol.277 , pp. 8172-8177
- Gardner, A.M.¹ Helmick, R.A.² Gardner, P.R.³

15
- 10644282612
- Gardner PR, Gardner AM (2001) Free Radic Biol Med 31:S78-S78.
- (2001) Free Radic Biol Med , vol.31
- Gardner, P.R.¹ Gardner, A.M.²

16
- 14644387541
- Poole RK (2005) Biochem Soc Trans 33:176-180.
- (2005) Biochem Soc Trans , vol.33 , pp. 176-180
- Poole, R.K.¹

17
- 0037189546
- Poock SR, Leach ER, Moir JW, Cole JA, Richardson DJ (2002) J Biol Chem 277:23664-23669.
- (2002) J Biol Chem , vol.277 , pp. 23664-23669
- Poock, S.R.¹ Leach, E.R.² Moir, J.W.³ Cole, J.A.⁴ Richardson, D.J.⁵

18
- 26944499456
- D'Autreaux B, Tucker NP, Dixon R, Spiro S (2005) Nature 437:769-772.
- (2005) Nature , vol.437 , pp. 769-772
- D'Autreaux, B.¹ Tucker, N.P.² Dixon, R.³ Spiro, S.⁴

19
- 31344459536
- Bodenmiller DM, Spiro S (2006) J Bacteriol 188:874-881.
- (2006) J Bacteriol , vol.188 , pp. 874-881
- Bodenmiller, D.M.¹ Spiro, S.²

20
- 85044710067
- Rodionov DA, Dubchak IL, Arkin AP, Aim EJ, Gelfand MS (2005) PLoS Comput Biol 1:415-431.
- (2005) PLoS Comput Biol , vol.1 , pp. 415-431
- Rodionov, D.A.¹ Dubchak, I.L.² Arkin, A.P.³ Aim, E.J.⁴ Gelfand, M.S.⁵

21
- 15444363634
- Flatley J, Barrett J, Pullan ST, Hughes MN, Green J, Poole RK (2005) J Biol Chem 280:10065-10072.
- (2005) J Biol Chem , vol.280 , pp. 10065-10072
- Flatley, J.¹ Barrett, J.² Pullan, S.T.³ Hughes, M.N.⁴ Green, J.⁵ Poole, R.K.⁶

22
- 13244299310
- Justino MC, Vicente JB, Teixeira M, Saraiva LM (2005) J Biol Chem 280:2636-2643.
- (2005) J Biol Chem , vol.280 , pp. 2636-2643
- Justino, M.C.¹ Vicente, J.B.² Teixeira, M.³ Saraiva, L.M.⁴

23
- 1642514907
- Mukhopadhyay P, Zheng M, Bedzyk LA, LaRossa RA, Storz G (2004) Proc Natl Acad Sci USA 101:745-750.
- (2004) Proc Natl Acad Sci USA , vol.101 , pp. 745-750
- Mukhopadhyay, P.¹ Zheng, M.² Bedzyk, L.A.³ LaRossa, R.A.⁴ Storz, G.⁵

24
- 33947420458
- Pullan ST, Gidley MD, Jones RA, Barrett J, Stevanin TM, Read RC, Green J, Poole RK (2007) J Bacteriol 189:1845-1855.
- (2007) J Bacteriol , vol.189 , pp. 1845-1855
- Pullan, S.T.¹ Gidley, M.D.² Jones, R.A.³ Barrett, J.⁴ Stevanin, T.M.⁵ Read, R.C.⁶ Green, J.⁷ Poole, R.K.⁸

25
- 0345824737
- Liao JC, Boscolo R, Yang YL, Tran LM, Sabatti C, Roychowdhury VP (2003) Proc Natl Acad Sci USA 100:15522-15527.
- (2003) Proc Natl Acad Sci USA , vol.100 , pp. 15522-15527
- Liao, J.C.¹ Boscolo, R.² Yang, Y.L.³ Tran, L.M.⁴ Sabatti, C.⁵ Roychowdhury, V.P.⁶

26
- 15244338624
- Tran LM, Brynildsen MP, Kao KC, Suen JK, Liao JC (2005) Metab Eng 7:128-141.
- (2005) Metab Eng , vol.7 , pp. 128-141
- Tran, L.M.¹ Brynildsen, M.P.² Kao, K.C.³ Suen, J.K.⁴ Liao, J.C.⁵

27
- 24044458903
- Yang YL, Liao JC (2005) Metab Eng 7:280-290.
- (2005) Metab Eng , vol.7 , pp. 280-290
- Yang, Y.L.¹ Liao, J.C.²

28
- 34547439452
- Kao KC, Yang YL, Liao JC, Boscolo R, Sabatti C, Roychowdhury V (2004) Abstr Pap Am Chem Soc 227:U216-U217.
- (2004) Abstr Pap Am Chem Soc , vol.227
- Kao, K.C.¹ Yang, Y.L.² Liao, J.C.³ Boscolo, R.⁴ Sabatti, C.⁵ Roychowdhury, V.⁶

29
- 0029821342
- Keefer LK, Nims RW, Davies KM, Wink DA (1996) Methods Enzymol 268:281-293.
- (1996) Methods Enzymol , vol.268 , pp. 281-293
- Keefer, L.K.¹ Nims, R.W.² Davies, K.M.³ Wink, D.A.⁴

30
- 0142042997
- Hyduke DR, Rohlin L, Kao KC, Liao JC (2003) OMICS 7:227-234.
- (2003) OMICS , vol.7 , pp. 227-234
- Hyduke, D.R.¹ Rohlin, L.² Kao, K.C.³ Liao, J.C.⁴

31
- 9144270496
- Salgado H, Gama-Castro S, Martinez-Antonio A, Diaz-Peredo E, Sanchez-Solano F, Peralta-Gil M, Garcia-Alonso D, Jimenez-Jacinto V, Santos-Zavaleta A, Bonavides-Martinez C, et al. (2004) Nucleic Acids Res 32:D303-D306.
- (2004) Nucleic Acids Res , vol.32
- Salgado, H.¹ Gama-Castro, S.² Martinez-Antonio, A.³ Diaz-Peredo, E.⁴ Sanchez-Solano, F.⁵ Peralta-Gil, M.⁶ Garcia-Alonso, D.⁷ Jimenez-Jacinto, V.⁸ Santos-Zavaleta, A.⁹ Bonavides-Martinez, C.¹⁰

32
- 13444262374
- Keseler IM, Collado-Vides J, Gama-Castro S, Ingraham J, Paley S, Paulsen IT, Peralta-Gill M, Karp PD (2005) Nucleic Acids Res 33:D334-D337.
- (2005) Nucleic Acids Res , vol.33
- Keseler, I.M.¹ Collado-Vides, J.² Gama-Castro, S.³ Ingraham, J.⁴ Paley, S.⁵ Paulsen, I.T.⁶ Peralta-Gill, M.⁷ Karp, P.D.⁸

33
- 33646427470
- Giel JL, Rodionov D, Liu MZ, Blattner FR, Kiley PJ (2006) Mol Microbiol 60:1058-1075.
- (2006) Mol Microbiol , vol.60 , pp. 1058-1075
- Giel, J.L.¹ Rodionov, D.² Liu, M.Z.³ Blattner, F.R.⁴ Kiley, P.J.⁵

34
- 0037066704
- Yang W, Rogers PA, Ding H (2002) J Biol Chem 277:12868-12873.
- (2002) J Biol Chem , vol.277 , pp. 12868-12873
- Yang, W.¹ Rogers, P.A.² Ding, H.³

35
- 0030956929
- Stamler JS, Toone EJ, Lipton SA, Sucher NJ (1997) Neuron 18:691-696.
- (1997) Neuron , vol.18 , pp. 691-696
- Stamler, J.S.¹ Toone, E.J.² Lipton, S.A.³ Sucher, N.J.⁴

36
- 0035933597
- Georgellis D, Kwon O, Lin ECC (2001) Science 292:2314-2316.
- (2001) Science , vol.292 , pp. 2314-2316
- Georgellis, D.¹ Kwon, O.² Lin, E.C.C.³

37
- 33645226161
- Justino MC, Almeida CC, Goncalves VL, Teixeira M, Saraiva LM (2006) FEMS Microbiol Lett 257:278-284.
- (2006) FEMS Microbiol Lett , vol.257 , pp. 278-284
- Justino, M.C.¹ Almeida, C.C.² Goncalves, V.L.³ Teixeira, M.⁴ Saraiva, L.M.⁵

38
- 0017164717
- Boehm DE, Vincent K, Brown OR (1976) Nature 262:418-420.
- (1976) Nature , vol.262 , pp. 418-420
- Boehm, D.E.¹ Vincent, K.² Brown, O.R.³

39
- 0027491617
- Flint DH, Tuminello JF, Emptage MH (1993) J Biol Chem 268:22369-22376.
- (1993) J Biol Chem , vol.268 , pp. 22369-22376
- Flint, D.H.¹ Tuminello, J.F.² Emptage, M.H.³

40
- 0023178381
- Kuo CF, Mashino T, Fridovich I (1987) J Biol Chem 262:4724-4727.
- (1987) J Biol Chem , vol.262 , pp. 4724-4727
- Kuo, C.F.¹ Mashino, T.² Fridovich, I.³

41
- 7244239273
- Djaman O, Outten FW, Imlay JA (2004) J Biol Chem 279:44590-44599.
- (2004) J Biol Chem , vol.279 , pp. 44590-44599
- Djaman, O.¹ Outten, F.W.² Imlay, J.A.³

42
- 33646915688
- Roos V, Klemm P (2006) Infect Immun 74:3565-3575.
- (2006) Infect Immun , vol.74 , pp. 3565-3575
- Roos, V.¹ Klemm, P.²

43
- 0001669019
- ed Adolph KW Academic, Orlando, FL, pp
- Wanner BL (1994) in Methods in Molecular Genetics, ed Adolph KW (Academic, Orlando, FL), pp 291-310.
- (1994) Methods in Molecular Genetics , pp. 291-310
- Wanner, B.L.¹

44
- 0003506528
- Jones and Bartlett, Boston
- Maloy SR (1990) Experimental Techniques in Bacterial Genetics (Jones and Bartlett, Boston).
- (1990) Experimental Techniques in Bacterial Genetics
- Maloy, S.R.¹

45
- 33645958298
- Lee TJ, Pouliot Y, Wagner V, Gupta P, Stringer-Calvert DW, Tenenbaum JD, Karp PD (2006) BMC Bioinformatics 7:170.
- (2006) BMC Bioinformatics , vol.7 , pp. 170
- Lee, T.J.¹ Pouliot, Y.² Wagner, V.³ Gupta, P.⁴ Stringer-Calvert, D.W.⁵ Tenenbaum, J.D.⁶ Karp, P.D.⁷

46
- 0034612342
- Datsenko KA, Wanner BL (2000) Proc Natl Acad Sci USA 97:6640-6645.
- (2000) Proc Natl Acad Sci USA , vol.97 , pp. 6640-6645
- Datsenko, K.A.¹ Wanner, B.L.²

47
- 34547426567
- Kiritani K, Wagner RP (1970) Methods Enzymol 17:745-750.
- (1970) Methods Enzymol , vol.17 , pp. 745-750
- Kiritani, K.¹ Wagner, R.P.²

48
- 0019325397
- Cioffi EA, Shaw KJ, Bailey WF, Berg CM (1980) Anal Biochem 104:485-488.
- (1980) Anal Biochem , vol.104 , pp. 485-488
- Cioffi, E.A.¹ Shaw, K.J.² Bailey, W.F.³ Berg, C.M.⁴

49
- 0015092438
- Wixom RL, Garrett JL, Fetzek JP (1971) Anal Biochem 42:262-274.
- (1971) Anal Biochem , vol.42 , pp. 262-274
- Wixom, R.L.¹ Garrett, J.L.² Fetzek, J.P.³

* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.