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Volumn 52, Issue 10, 2007, Pages 1327-1337

Experimental validation of inter-subspecific genetic diversity in rice represented by the differences between the DNA sequences of 'Nipponbare' and '93-11'

Author keywords

Genetic diversity; InDels; Oryza sativa L.; Pedigree; SSRs; Subspecific polymorphism

Indexed keywords

JAPONICA; ORYZA SATIVA;

EID: 34347221562     PISSN: 10016538     EISSN: 18619541     Source Type: Journal    
DOI: 10.1007/s11434-007-0198-9     Document Type: Article
Times cited : (4)

References (33)
  • 1
    • 0037023349 scopus 로고    scopus 로고
    • A draft sequence of the rice genome (Oryza saliva L ssp japonica)
    • Goff S A, Ricke D, Lan T H, et al. A draft sequence of the rice genome (Oryza saliva L ssp japonica). Science, 2002, 296: 92-100
    • (2002) Science , vol.296 , pp. 92-100
    • Goff, S.A.1    Ricke, D.2    Lan, T.H.3
  • 2
    • 0037153127 scopus 로고    scopus 로고
    • Sequence and analysis of rice chromosome 4
    • Feng Q, Zhang Y, Hao P, et al. Sequence and analysis of rice chromosome 4. Nature, 2002, 420: 316-320
    • (2002) Nature , vol.420 , pp. 316-320
    • Feng, Q.1    Zhang, Y.2    Hao, P.3
  • 3
    • 0037153190 scopus 로고    scopus 로고
    • The genome sequence and structure of rice chromosome 1
    • Sasaki T, Matsumoto T, Yamamoto K, et al. The genome sequence and structure of rice chromosome 1. Nature, 2002, 420: 312-316
    • (2002) Nature , vol.420 , pp. 312-316
    • Sasaki, T.1    Matsumoto, T.2    Yamamoto, K.3
  • 4
    • 0037023384 scopus 로고    scopus 로고
    • A draft sequence of the rice genome (Oryza sativa L ssp indica)
    • Yu J, Hu S, Wang J, et al. A draft sequence of the rice genome (Oryza sativa L ssp indica). Science, 2002, 296: 79-92
    • (2002) Science , vol.296 , pp. 79-92
    • Yu, J.1    Hu, S.2    Wang, J.3
  • 5
    • 0038581538 scopus 로고    scopus 로고
    • In-depth view of structure, activity, and evolution of rice chromosome 10
    • The Rice Chromosome 10 Sequencing Consortium
    • The Rice Chromosome 10 Sequencing Consortium. In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003, 300: 1566-1569
    • (2003) Science , vol.300 , pp. 1566-1569
  • 6
    • 0036112441 scopus 로고    scopus 로고
    • A fine physical map of the rice chromosome-4
    • Zhao Q, Zhang Y, Cheng Z, et al. A fine physical map of the rice chromosome-4. Genome Res, 2002, 12: 817-823
    • (2002) Genome Res , vol.12 , pp. 817-823
    • Zhao, Q.1    Zhang, Y.2    Cheng, Z.3
  • 7
    • 0037394626 scopus 로고    scopus 로고
    • Genome-wide intraspecific DNA-sequence variations in rice
    • Han B, Xue Y B. Genome-wide intraspecific DNA-sequence variations in rice. Curr Opin in Plant Bio, 2003, 6: 134-138
    • (2003) Curr Opin in Plant Bio , vol.6 , pp. 134-138
    • Han, B.1    Xue, Y.B.2
  • 8
    • 0036928794 scopus 로고    scopus 로고
    • Search for and analysis of single nucleotide polymorphisms SNPs) in rice (Oryza sativa, O. rufipogori) and establishment of SNP markers
    • Nasu S, Suzuki J, Ohta R, et al. Search for and analysis of single nucleotide polymorphisms SNPs) in rice (Oryza sativa, O. rufipogori) and establishment of SNP markers. DNA Res, 2002, 9: 163-171
    • (2002) DNA Res , vol.9 , pp. 163-171
    • Nasu, S.1    Suzuki, J.2    Ohta, R.3
  • 9
    • 4644353880 scopus 로고    scopus 로고
    • An SNP resource for rice genetic and breeding based on subspecies indica and japonica genome alignments
    • Feltus F A, Wan J, Schulze S R, et al. An SNP resource for rice genetic and breeding based on subspecies indica and japonica genome alignments. Genome Res, 2004, 14: 1812-1819
    • (2004) Genome Res , vol.14 , pp. 1812-1819
    • Feltus, F.A.1    Wan, J.2    Schulze, S.R.3
  • 10
    • 3543034045 scopus 로고    scopus 로고
    • Development of genome-wide DNA polymorphism database for map-based cloning of rice genes
    • Shen Y J, Jiang H, Jin J P, et al. Development of genome-wide DNA polymorphism database for map-based cloning of rice genes. Plant Physiol, 2004, 135: 1198-1205
    • (2004) Plant Physiol , vol.135 , pp. 1198-1205
    • Shen, Y.J.1    Jiang, H.2    Jin, J.P.3
  • 11
    • 33744902325 scopus 로고    scopus 로고
    • Genome-wide searching of single-nucleotide polymorphisms among eight distantly and closely related rice cultivars (Oryza sativa L.) and a wild accession (Oryza ruflpogon Griff.)
    • Monna L, Ohta R, Masuda H, et al. Genome-wide searching of single-nucleotide polymorphisms among eight distantly and closely related rice cultivars (Oryza sativa L.) and a wild accession (Oryza ruflpogon Griff.). DNA Res, 2006, 13: 43-51
    • (2006) DNA Res , vol.13 , pp. 43-51
    • Monna, L.1    Ohta, R.2    Masuda, H.3
  • 12
    • 0006044944 scopus 로고
    • A statistical evaluation of the classification of rice cultivars into hsien and keng subspecies
    • Cheng K S. A statistical evaluation of the classification of rice cultivars into hsien and keng subspecies. Rice Genetics Newsletter, 1985,2: 46-48
    • (1985) Rice Genetics Newsletter , vol.2 , pp. 46-48
    • Cheng, K.S.1
  • 13
    • 0019321718 scopus 로고
    • Rapid isolation of high molecular weight plant DNA
    • Murray M G, Thompson W F. Rapid isolation of high molecular weight plant DNA. Nuc Acid Res, 1980, 8: 4321-4325
    • (1980) Nuc Acid Res , vol.8 , pp. 4321-4325
    • Murray, M.G.1    Thompson, W.F.2
  • 14
    • 34347204487 scopus 로고    scopus 로고
    • Study on the classification of rice varieties with SSR molecular markers
    • Zhu Z F, Sun C Q, Li Z C, et al. Study on the classification of rice varieties with SSR molecular markers. Chin J Agri Biotech, 2001, 9: 58-61
    • (2001) Chin J Agri Biotech , vol.9 , pp. 58-61
    • Zhu, Z.F.1    Sun, C.Q.2    Li, Z.C.3
  • 15
    • 17444386263 scopus 로고    scopus 로고
    • Genetic structure and diversity in Oryza sativa L
    • Garris A J, Tai T H, Cobum J, et al. Genetic structure and diversity in Oryza sativa L. Genetics, 2005, 169: 1631-1638
    • (2005) Genetics , vol.169 , pp. 1631-1638
    • Garris, A.J.1    Tai, T.H.2    Cobum, J.3
  • 16
    • 34347209423 scopus 로고    scopus 로고
    • Rohlf F J. NTSYS-pc, numerical taxonomy and multivariate analysis system, ver 2.02. Exeter Software, New York: Setauket, 1998
    • Rohlf F J. NTSYS-pc, numerical taxonomy and multivariate analysis system, ver 2.02. Exeter Software, New York: Setauket, 1998
  • 17
    • 34347213421 scopus 로고    scopus 로고
    • Yeh F C, Yang R C, Boyle T. POPGENE Version 1.31, Microsoft Windows-based Freeware for Population Genetic Analysis. Edmonton: University of Alberta, 1999
    • Yeh F C, Yang R C, Boyle T. POPGENE Version 1.31, Microsoft Windows-based Freeware for Population Genetic Analysis. Edmonton: University of Alberta, 1999
  • 18
    • 75949146309 scopus 로고
    • The number of alleles that can be maintained in a finite population
    • Kimura M, Crow J F. The number of alleles that can be maintained in a finite population. Genetics, 1964, 49: 725-738
    • (1964) Genetics , vol.49 , pp. 725-738
    • Kimura, M.1    Crow, J.F.2
  • 19
    • 0006919926 scopus 로고
    • Analysis of gene diversity in subdivided populations
    • Nei M. Analysis of gene diversity in subdivided populations. Proc Natl Acad of Sci USA, 1973, 70: 3321-3323
    • (1973) Proc Natl Acad of Sci USA , vol.70 , pp. 3321-3323
    • Nei, M.1
  • 20
    • 0000244010 scopus 로고
    • The apportionment of human diversity
    • Lewontin R C. The apportionment of human diversity. Evo Bio, 1972, 6: 381-398
    • (1972) Evo Bio , vol.6 , pp. 381-398
    • Lewontin, R.C.1
  • 21
    • 34347240380 scopus 로고    scopus 로고
    • Schneider S, Roessi D, Excoffier L. Arlequin, a software for population genetics data analysis Ver 2.000. Genetics and Biometry Lab, Dept of Anthropology, University of Geneva, 2000
    • Schneider S, Roessi D, Excoffier L. Arlequin, a software for population genetics data analysis Ver 2.000. Genetics and Biometry Lab, Dept of Anthropology, University of Geneva, 2000
  • 22
    • 0002344931 scopus 로고
    • Algorithm 76, Hierarchical clustering using the minimum spanning tree
    • Rohlf F J. Algorithm 76, Hierarchical clustering using the minimum spanning tree. Comput J, 1973, 16: 93-95
    • (1973) Comput J , vol.16 , pp. 93-95
    • Rohlf, F.J.1
  • 23
    • 0030203863 scopus 로고    scopus 로고
    • An application to display phylogenetic trees on personal computers
    • Page RDM. TREEVIEW, An application to display phylogenetic trees on personal computers. Comput Appl Biosci, 1996, 12: 357-358
    • (1996) Comput Appl Biosci , vol.12 , pp. 357-358
    • Page, R.D.M.1    TREEVIEW2
  • 24
    • 34250103509 scopus 로고
    • Isozymes and classification of Asian rice
    • Glaszmann J C. Isozymes and classification of Asian rice. Theor Appl Genet, 1987, 74: 21-30
    • (1987) Theor Appl Genet , vol.74 , pp. 21-30
    • Glaszmann, J.C.1
  • 25
    • 1542380927 scopus 로고    scopus 로고
    • Sequence variation of simple sequence repeats on chromosome 4 in two subspecies of the Asian cultivated rice
    • Li C, Zhang Y, Ying K, et al. Sequence variation of simple sequence repeats on chromosome 4 in two subspecies of the Asian cultivated rice. Theor Appl Genet, 2004, 108: 392-400
    • (2004) Theor Appl Genet , vol.108 , pp. 392-400
    • Li, C.1    Zhang, Y.2    Ying, K.3
  • 26
    • 20444502606 scopus 로고    scopus 로고
    • Features of the expressed sequences revealed by a large-scale analysis of ESTs from a normalized cDNA library of the elite indica rice cultivar Minghui 63
    • Zhang J W, Feng Q, Jin C Q, et al. Features of the expressed sequences revealed by a large-scale analysis of ESTs from a normalized cDNA library of the elite indica rice cultivar Minghui 63. Plant J, 2005, 42: 772-780
    • (2005) Plant J , vol.42 , pp. 772-780
    • Zhang, J.W.1    Feng, Q.2    Jin, C.Q.3
  • 27
    • 0031239092 scopus 로고    scopus 로고
    • Origin, dispersal, cultivation and variation of rice
    • Khush G S. Origin, dispersal, cultivation and variation of rice. Plant Mol Bio, 1997, 35: 25-34
    • (1997) Plant Mol Bio , vol.35 , pp. 25-34
    • Khush, G.S.1
  • 28
  • 29
    • 85004247016 scopus 로고
    • Second G Origin of the genic diversity of cultivated rice (Oryza spp.), Study of the polymorphism scored at 40 isozyme loci
    • Second G Origin of the genic diversity of cultivated rice (Oryza spp.), Study of the polymorphism scored at 40 isozyme loci. Jap J Genet, 1982, 57: 25-57
    • (1982) Jap J Genet , vol.57 , pp. 25-57
  • 30
    • 0342360139 scopus 로고
    • Intraspecific variation and genetic differentiation based on restriction fragment length polymor-phism in Asian cultivated rice, Oryza sativa L
    • Manila: International Rice Research Institute
    • Kawase M, Kishimoto N, Tanaka T, et al. Intraspecific variation and genetic differentiation based on restriction fragment length polymor-phism in Asian cultivated rice, Oryza sativa L. In: Rice Genetics II. Manila: International Rice Research Institute, 1992. 467-473
    • (1992) Rice Genetics II , pp. 467-473
    • Kawase, M.1    Kishimoto, N.2    Tanaka, T.3
  • 31
    • 0000205632 scopus 로고
    • Genetic diversity and differentiation of indica and japonica rice detected by RFLP analysis
    • Zhang Q F, Maroof M A S, Lu T Y et al. Genetic diversity and differentiation of indica and japonica rice detected by RFLP analysis. Theor Appl Genet, 1992, 83: 495-499
    • (1992) Theor Appl Genet , vol.83 , pp. 495-499
    • Zhang, Q.F.1    Maroof, M.A.S.2    Lu, T.Y.3
  • 32
    • 0036302260 scopus 로고    scopus 로고
    • Evaluation of genetic diversity in rice subspecies using microsatellite markers
    • Ni J, Colowit P M, Mackill D J. Evaluation of genetic diversity in rice subspecies using microsatellite markers. Crop Sci, 2002, 42: 601-607
    • (2002) Crop Sci , vol.42 , pp. 601-607
    • Ni, J.1    Colowit, P.M.2    Mackill, D.J.3
  • 33
    • 23044461216 scopus 로고    scopus 로고
    • Genetic analysis of morphological index and its related taxonomic traits for classification of indica/japonica rice
    • Qian Q, He P, Zheng X, et al. Genetic analysis of morphological index and its related taxonomic traits for classification of indica/japonica rice. Sci China Ser C-Life Sci, 2000, 43(2): 113-119
    • (2000) Sci China Ser C-Life Sci , vol.43 , Issue.2 , pp. 113-119
    • Qian, Q.1    He, P.2    Zheng, X.3


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