메뉴 건너뛰기




Volumn 2, Issue 2, 2007, Pages 357-371

DNA base mismatch detection with bulky rhodium intercalators: Synthesis and applications

Author keywords

[No Author keywords available]

Indexed keywords

DNA BASE; DOUBLE STRANDED DNA; HETERODUPLEX; INTERCALATING AGENT; METAL COMPLEX; OLIGONUCLEOTIDE; PHOSPHORUS 32; RHODIUM;

EID: 34347204520     PISSN: 17542189     EISSN: 17502799     Source Type: Journal    
DOI: 10.1038/nprot.2007.22     Document Type: Article
Times cited : (55)

References (29)
  • 1
    • 33646965265 scopus 로고    scopus 로고
    • Recognition and reaction of metallointercalators with DNA
    • Erkkila, K.E., Odom, D.T. & Barton, J.K. Recognition and reaction of metallointercalators with DNA. Chem. Rev. 99, 2777-2796 (1999).
    • (1999) Chem. Rev , vol.99 , pp. 2777-2796
    • Erkkila, K.E.1    Odom, D.T.2    Barton, J.K.3
  • 3
    • 0001337642 scopus 로고    scopus 로고
    • Recognition of DNA base mismatches by a rhodium intercalator
    • Jackson, B.A. & Barton, J.K. Recognition of DNA base mismatches by a rhodium intercalator. J. Am. Chem. Soc. 119, 12986-12987 (1997).
    • (1997) J. Am. Chem. Soc , vol.119 , pp. 12986-12987
    • Jackson, B.A.1    Barton, J.K.2
  • 4
    • 17144436591 scopus 로고    scopus 로고
    • A versatile mismatch recognition agent: Specific cleavage of a plasmid DNA at a single base mispair
    • Jackson, B.A., Alekseyev, V.Y. & Barton, J.K. A versatile mismatch recognition agent: Specific cleavage of a plasmid DNA at a single base mispair. Biochemistry 38, 4655-4662 (1999).
    • (1999) Biochemistry , vol.38 , pp. 4655-4662
    • Jackson, B.A.1    Alekseyev, V.Y.2    Barton, J.K.3
  • 5
    • 0034705218 scopus 로고    scopus 로고
    • Recognition of base mismatches in DNA by 5,6-chrysenequinone diimine complexes of rhodium(III): A proposed mechanism for preferential binding in destabilized regions of the double helix
    • Jackson, B.A. & Barton, J.K. Recognition of base mismatches in DNA by 5,6-chrysenequinone diimine complexes of rhodium(III): A proposed mechanism for preferential binding in destabilized regions of the double helix. Biochemistry 39, 6176-6182 (2000).
    • (2000) Biochemistry , vol.39 , pp. 6176-6182
    • Jackson, B.A.1    Barton, J.K.2
  • 6
    • 0026355962 scopus 로고
    • Mechanisms and biological effects of mismatch repair
    • Modrich, P. Mechanisms and biological effects of mismatch repair. Annu. Rev. Genet. 25, 229-253 (1991).
    • (1991) Annu. Rev. Genet , vol.25 , pp. 229-253
    • Modrich, P.1
  • 7
    • 0029784320 scopus 로고    scopus 로고
    • Biochemistry and genetics of eukaryotic mismatch repair
    • Kolodner, R. Biochemistry and genetics of eukaryotic mismatch repair. Genes Dev. 10, 1433-1442 (1996).
    • (1996) Genes Dev , vol.10 , pp. 1433-1442
    • Kolodner, R.1
  • 8
    • 0034500024 scopus 로고    scopus 로고
    • DNA mismatch repair and genetic instability
    • Harfe, B.D. & Jinks-Robertson, S. DNA mismatch repair and genetic instability. Annu. Rev. Genet. 34, 359-399 (2000).
    • (2000) Annu. Rev. Genet , vol.34 , pp. 359-399
    • Harfe, B.D.1    Jinks-Robertson, S.2
  • 9
    • 33750083332 scopus 로고    scopus 로고
    • Mechanisms in eukaryotic mismatch repair
    • Modrich, P. Mechanisms in eukaryotic mismatch repair. J. Biol. Chem. 281, 30305-30309 (2006).
    • (2006) J. Biol. Chem , vol.281 , pp. 30305-30309
    • Modrich, P.1
  • 10
    • 0028867842 scopus 로고
    • Mismatch repair: Mechanisms and relationship to cancer susceptibility
    • Kolodner, R.D. Mismatch repair: Mechanisms and relationship to cancer susceptibility. Trends Biochem. Sci. 20, 397-401 (1995).
    • (1995) Trends Biochem. Sci , vol.20 , pp. 397-401
    • Kolodner, R.D.1
  • 11
    • 0032525214 scopus 로고    scopus 로고
    • Microsatellite instability in human solid tumors
    • Arzimanoglou, I.I., Gilbert, F. & Barber, H.R. Microsatellite instability in human solid tumors. Cancer 82, 1808-1820 (1998).
    • (1998) Cancer , vol.82 , pp. 1808-1820
    • Arzimanoglou, I.I.1    Gilbert, F.2    Barber, H.R.3
  • 13
    • 0037388071 scopus 로고    scopus 로고
    • A rhodium(III) complex for high-affinity DNA base-pair mismatch recognition
    • Junicke, H. et al. A rhodium(III) complex for high-affinity DNA base-pair mismatch recognition. Proc. Natl. Acad. Sci. USA 100 3737-3742 (2003).
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 3737-3742
    • Junicke, H.1
  • 14
    • 0035654137 scopus 로고    scopus 로고
    • Acessing genetic variation: Genotyping single nucleotide polymorphisms
    • Syvänen, A. Acessing genetic variation: Genotyping single nucleotide polymorphisms. Nat. Rev. Genet. 2, 930-942 (2001).
    • (2001) Nat. Rev. Genet , vol.2 , pp. 930-942
    • Syvänen, A.1
  • 15
    • 4644274416 scopus 로고    scopus 로고
    • Single-nucleotide polymorphism discovery by targeted DNA photocleavage
    • Hart, J.R., Johnson, M.D. & Barton, J.K. Single-nucleotide polymorphism discovery by targeted DNA photocleavage. Proc. Natl. Acad. Sci. USA 101, 14040-14044 (2004).
    • (2004) Proc. Natl. Acad. Sci. USA , vol.101 , pp. 14040-14044
    • Hart, J.R.1    Johnson, M.D.2    Barton, J.K.3
  • 16
    • 33846270649 scopus 로고    scopus 로고
    • Insights into finding a mismatch through the structure of a mispaired DNA bound by a rhodium intercalator
    • Pierre, V.C., Kaiser, J.T. & Barton, J.K. Insights into finding a mismatch through the structure of a mispaired DNA bound by a rhodium intercalator. Proc. Natl. Acad. Sci. USA 104, 429-434 (2007).
    • (2007) Proc. Natl. Acad. Sci. USA , vol.104 , pp. 429-434
    • Pierre, V.C.1    Kaiser, J.T.2    Barton, J.K.3
  • 17
    • 0040684389 scopus 로고    scopus 로고
    • A versatile synthetic approach to rhodium(III) diimine metallointercalators: Condensation of o-quinones with coordinated cis-ammines
    • Mürner, H., Jackson, B.A. & Barton, J.K. A versatile synthetic approach to rhodium(III) diimine metallointercalators: Condensation of o-quinones with coordinated cis-ammines. Inorg. Chem. 37, 3007-3012 (1998).
    • (1998) Inorg. Chem , vol.37 , pp. 3007-3012
    • Mürner, H.1    Jackson, B.A.2    Barton, J.K.3
  • 18
    • 33751385003 scopus 로고
    • Metallointercalators: Syntheses, structures, and photochemical characterizations of phenanthrenequinone diimine complexes of rhodium(III)
    • Krotz, A.H., Kuo, L.Y. & Barton, J.K. Metallointercalators: Syntheses, structures, and photochemical characterizations of phenanthrenequinone diimine complexes of rhodium(III). Inorg. Chem. 32, 5963-5974 (1993).
    • (1993) Inorg. Chem , vol.32 , pp. 5963-5974
    • Krotz, A.H.1    Kuo, L.Y.2    Barton, J.K.3
  • 19
    • 0039452718 scopus 로고    scopus 로고
    • Different approaches of molecular scanning of point mutations in genetic diseases
    • Ferrari, M., Carrera, P. & Cremonesi, L. Different approaches of molecular scanning of point mutations in genetic diseases. Pure Appl. Chem. 68, 1913-1918 (1996).
    • (1996) Pure Appl. Chem , vol.68 , pp. 1913-1918
    • Ferrari, M.1    Carrera, P.2    Cremonesi, L.3
  • 20
    • 0030021312 scopus 로고    scopus 로고
    • Increasing the information content of STS-based genome maps: Identifying polymorphisms in mapped STSs
    • Kwok, P.Y., Deng, Q., Zakeri, H., Taylor, S.L. & Nickerson, D.A. Increasing the information content of STS-based genome maps: Identifying polymorphisms in mapped STSs. Genomics 31, 123-126 (1996).
    • (1996) Genomics , vol.31 , pp. 123-126
    • Kwok, P.Y.1    Deng, Q.2    Zakeri, H.3    Taylor, S.L.4    Nickerson, D.A.5
  • 21
    • 0033042156 scopus 로고    scopus 로고
    • Efficient approach to unique single-nucleotide polymorphism discovery
    • Taillon-Miller, P., Piernot, E.E. & Kwok, P.Y. Efficient approach to unique single-nucleotide polymorphism discovery. Genome Res. 9 499-505 (1999).
    • (1999) Genome Res , vol.9 , pp. 499-505
    • Taillon-Miller, P.1    Piernot, E.E.2    Kwok, P.Y.3
  • 22
    • 0037252593 scopus 로고    scopus 로고
    • Mapping genetic alterations in tumors with single nucleotide polymorphisms
    • Zhou, W. Mapping genetic alterations in tumors with single nucleotide polymorphisms. Curr. Opin. Oncol. 15, 50-54 (2003).
    • (2003) Curr. Opin. Oncol , vol.15 , pp. 50-54
    • Zhou, W.1
  • 23
    • 0033810469 scopus 로고    scopus 로고
    • Single nucleotide polymorphisms and the future of genetic epidemiology
    • Schork, N.J., Fallin, D. & Lanchbury, J.S. Single nucleotide polymorphisms and the future of genetic epidemiology. Clin. Genet. 58, 250-264 (2000).
    • (2000) Clin. Genet , vol.58 , pp. 250-264
    • Schork, N.J.1    Fallin, D.2    Lanchbury, J.S.3
  • 24
    • 0032519307 scopus 로고    scopus 로고
    • Automating the identification of DNA variations using quality-based fluorescence re-sequencing: Analysis of the human mitochondrial genome
    • Rieder, M.J., Taylor, S.L., Tobe, V.O. & Nickerson, D.A. Automating the identification of DNA variations using quality-based fluorescence re-sequencing: Analysis of the human mitochondrial genome. Nucleic Acids Res. 26, 967-973 (1998).
    • (1998) Nucleic Acids Res , vol.26 , pp. 967-973
    • Rieder, M.J.1    Taylor, S.L.2    Tobe, V.O.3    Nickerson, D.A.4
  • 25
    • 8844234926 scopus 로고    scopus 로고
    • Tuning the DNA reactivity of cis platinum: Conjugation to a mismatch-specific metallointercalator
    • Petitjean, A. & Barton, J.K. Tuning the DNA reactivity of cis platinum: Conjugation to a mismatch-specific metallointercalator. J. Am. Chem. Soc. 126, 14728-14729 (2004).
    • (2004) J. Am. Chem. Soc , vol.126 , pp. 14728-14729
    • Petitjean, A.1    Barton, J.K.2
  • 26
    • 3242684962 scopus 로고    scopus 로고
    • Bifunctional rhodium intercalator conjugates as mismatch-directing DNA alkylating agents
    • Schatzschneider, U. & Barton, J.K. Bifunctional rhodium intercalator conjugates as mismatch-directing DNA alkylating agents. J. Am. Chem. Soc. 126, 8630-8631 (2004).
    • (2004) J. Am. Chem. Soc , vol.126 , pp. 8630-8631
    • Schatzschneider, U.1    Barton, J.K.2
  • 27
    • 33646592546 scopus 로고    scopus 로고
    • A mismatch-selective bifunctional rhodium-oregon green conjugate: A fluorescent probe for mismatched DNA
    • Zeglis, B.M. & Barton, J.K. A mismatch-selective bifunctional rhodium-oregon green conjugate: A fluorescent probe for mismatched DNA. J. Am. Chem. Soc. 128, 5654-5655 (2006).
    • (2006) J. Am. Chem. Soc , vol.128 , pp. 5654-5655
    • Zeglis, B.M.1    Barton, J.K.2
  • 28
    • 33749537683 scopus 로고    scopus 로고
    • Targeting DNA mismatches with rhodium intercalators functionalized with a cell-penetrating peptide
    • Brunner, J. & Barton, J.K. Targeting DNA mismatches with rhodium intercalators functionalized with a cell-penetrating peptide. Biochemistry 45, 12295-12302 (2006).
    • (2006) Biochemistry , vol.45 , pp. 12295-12302
    • Brunner, J.1    Barton, J.K.2
  • 29
    • 33750349226 scopus 로고    scopus 로고
    • DNA mismatch-specific targeting and hypersensitivity ofmismatch-repair-deficient cells to bulky rhodium(III) intercalators
    • Hart, J.R., Glebov, O., Ernst, R.J., Kirsch, I.R. & Barton, J.K. DNA mismatch-specific targeting and hypersensitivity ofmismatch-repair-deficient cells to bulky rhodium(III) intercalators. Proc. Natl. Acad. Sci. USA 103, 15359-15363 (2006)
    • (2006) Proc. Natl. Acad. Sci. USA , vol.103 , pp. 15359-15363
    • Hart, J.R.1    Glebov, O.2    Ernst, R.J.3    Kirsch, I.R.4    Barton, J.K.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.