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Volumn 68, Issue 2, 2007, Pages 438-445

Crystal structure of S. aureus YlaN, an essential leucine rich protein involved in the control of cell shape

Author keywords

Antibiotics; Cell shape; Coiled coil; Crystal structure; Essential gene; Leucine zipper; YlaN

Indexed keywords

ANTIBIOTIC AGENT; BACTERIAL PROTEIN; LEUCINE; PROTEIN SUBUNIT; PROTEIN YLAN; UNCLASSIFIED DRUG;

EID: 34250849031     PISSN: 08873585     EISSN: 10970134     Source Type: Journal    
DOI: 10.1002/prot.21377     Document Type: Article
Times cited : (8)

References (32)
  • 1
    • 0032014842 scopus 로고    scopus 로고
    • The challenge of antibiotic resistance
    • Levy SB. The challenge of antibiotic resistance. Sci Am 1998; 278:46-53.
    • (1998) Sci Am , vol.278 , pp. 46-53
    • Levy, S.B.1
  • 2
    • 0345668475 scopus 로고    scopus 로고
    • Kobayashi K, Ehrlich SD, Albertini A, Amati G, Andersen KK, Arnaud M, Asai K, Ashikaga S, Aymerich S, Bessieres P, Boland F, Brignell SC, Bron S, Bunai K, Chapuis J, Christiansen LC, Danchin A, Debarbouille M, Dervyn E, Deuerling E, Devine K, Devine SK, Dreesen O, Errington J, Fillinger S, Foster SJ, Fujita Y, Galizzi A, Gardan R, Eschevins C, Fukushima T, Haga K, Harwood CR, Hecker M, Hosoya D, Hullo MF, Kakeshita H, Karamata D, Kasahara Y, Kawamura F, Koga K, Koski P, Kuwana R, Imamura D, Ishimaru M, Ishikawa S, Ishio I, Le Coq D, Masson A, Mauel C, Meima R, Mellado RP, Moir A, Moriya S, Nagakawa E, Nanamiya H, Nakai S, Nygaard P, Ogura M, Ohanan T, O'Reilly M, O'Rourke M, Pragai Z, Pooley HM, Rapoport G, Rawlins JP, Rivas LA, Rivolta C, Sadaie A, Sadaie Y, Sarvas M, Sato T, Saxild HH, Scanlan E, Schumann W, Seegers J, Sekiguchi J, Sekowska A, Seror SJ, Simon M, Stragier P, Studer R, Takamatsu H, Tanaka T, Takeuchi M, Thomaides HB, Vagner V, van Dijl JM, Watabe K, Wipat A, Yamamoto H
    • Kobayashi K, Ehrlich SD, Albertini A, Amati G, Andersen KK, Arnaud M, Asai K, Ashikaga S, Aymerich S, Bessieres P, Boland F, Brignell SC, Bron S, Bunai K, Chapuis J, Christiansen LC, Danchin A, Debarbouille M, Dervyn E, Deuerling E, Devine K, Devine SK, Dreesen O, Errington J, Fillinger S, Foster SJ, Fujita Y, Galizzi A, Gardan R, Eschevins C, Fukushima T, Haga K, Harwood CR, Hecker M, Hosoya D, Hullo MF, Kakeshita H, Karamata D, Kasahara Y, Kawamura F, Koga K, Koski P, Kuwana R, Imamura D, Ishimaru M, Ishikawa S, Ishio I, Le Coq D, Masson A, Mauel C, Meima R, Mellado RP, Moir A, Moriya S, Nagakawa E, Nanamiya H, Nakai S, Nygaard P, Ogura M, Ohanan T, O'Reilly M, O'Rourke M, Pragai Z, Pooley HM, Rapoport G, Rawlins JP, Rivas LA, Rivolta C, Sadaie A, Sadaie Y, Sarvas M, Sato T, Saxild HH, Scanlan E, Schumann W, Seegers J, Sekiguchi J, Sekowska A, Seror SJ, Simon M, Stragier P, Studer R, Takamatsu H, Tanaka T, Takeuchi M, Thomaides HB, Vagner V, van Dijl JM, Watabe K, Wipat A, Yamamoto H, Yamamoto M, Yamamoto Y, Yamane K, Yata K, Yoshida K, Yoshikawa H, Zuber U, Ogasawara N. Essential Bacillus subtilis genes. Proc Nat Acad Sci USA 2003;100:4678-4683.
  • 3
    • 33747154724 scopus 로고    scopus 로고
    • Cloning, purification and preliminary crystallographic analysis of a conserved hypothetical protein, SA0961 (YlaN), from Staphylococcus aureus
    • Xu L, Sedelnikova SE, Baker PJ, Rice DW. Cloning, purification and preliminary crystallographic analysis of a conserved hypothetical protein, SA0961 (YlaN), from Staphylococcus aureus. Acta Crystallogr F-Struct Biol Cryst Commun 2006;62:778-780.
    • (2006) Acta Crystallogr F-Struct Biol Cryst Commun , vol.62 , pp. 778-780
    • Xu, L.1    Sedelnikova, S.E.2    Baker, P.J.3    Rice, D.W.4
  • 5
    • 33749645818 scopus 로고    scopus 로고
    • Functional analysis of 11 putative essential genes in Bacillus subtilis
    • Hunt A, Rawlins JP, Thomaides HB, Errington J. Functional analysis of 11 putative essential genes in Bacillus subtilis. Microbiology 2006;152(Part 10):2895-2907.
    • (2006) Microbiology , vol.152 , Issue.PART 10 , pp. 2895-2907
    • Hunt, A.1    Rawlins, J.P.2    Thomaides, H.B.3    Errington, J.4
  • 6
    • 15944399775 scopus 로고    scopus 로고
    • A magnesium-dependent mreB null mutant: Implications for the role of mreB in Bacillus subtilis
    • Formstone A, Errington J. A magnesium-dependent mreB null mutant: implications for the role of mreB in Bacillus subtilis. Mol Microbiol 2005;55:1646-1657.
    • (2005) Mol Microbiol , vol.55 , pp. 1646-1657
    • Formstone, A.1    Errington, J.2
  • 7
    • 23844444807 scopus 로고    scopus 로고
    • Roles for MreC and MreD proteins in helical growth of the cylindrical cell wall in Bacillus subtilis
    • Leaver M, Errington J. Roles for MreC and MreD proteins in helical growth of the cylindrical cell wall in Bacillus subtilis. Mol Microbiol 2005;57:1196-1209.
    • (2005) Mol Microbiol , vol.57 , pp. 1196-1209
    • Leaver, M.1    Errington, J.2
  • 8
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson JD, Higgins DG, Gibson TJ. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 1994;22:4673-4680.
    • (1994) Nucleic Acids Res , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 9
    • 0032961270 scopus 로고    scopus 로고
    • ESPript: Analysis of multiple sequence alignments in PostScript
    • Gouet P, Courcelle E, Stuart DI, Metoz F. ESPript: analysis of multiple sequence alignments in PostScript. Bioinformatics 1999;15:305-308.
    • (1999) Bioinformatics , vol.15 , pp. 305-308
    • Gouet, P.1    Courcelle, E.2    Stuart, D.I.3    Metoz, F.4
  • 11
    • 4644366388 scopus 로고    scopus 로고
    • HKL2MAP: A graphical user interface for macromolecular phasing with SHELX programs
    • Pape T, Schneider TR. HKL2MAP: a graphical user interface for macromolecular phasing with SHELX programs. J Appl Crystallogr 2004;37:843-844.
    • (2004) J Appl Crystallogr , vol.37 , pp. 843-844
    • Pape, T.1    Schneider, T.R.2
  • 12
    • 0033229885 scopus 로고    scopus 로고
    • Evaluation of macromolecular electron-density map quality using the correlation of local r.m.s. density
    • Terwilliger TC, Berendzen J. Evaluation of macromolecular electron-density map quality using the correlation of local r.m.s. density. Acta Crystallogr D Biol Crystallogr 1999;55: 1872-1877.
    • (1999) Acta Crystallogr D Biol Crystallogr , vol.55 , pp. 1872-1877
    • Terwilliger, T.C.1    Berendzen, J.2
  • 13
    • 0242460576 scopus 로고    scopus 로고
    • Generation, representation and flow of phase information in structure determination: Recent developments in and around SHARP 2.0
    • Bricogne G, Vonrhein C, Flensburg C, Schiltz M, Paciorek W. Generation, representation and flow of phase information in structure determination: recent developments in and around SHARP 2.0. Acta Crystallogr D Biol Crystallogr 2003;59:2023-2030.
    • (2003) Acta Crystallogr D Biol Crystallogr , vol.59 , pp. 2023-2030
    • Bricogne, G.1    Vonrhein, C.2    Flensburg, C.3    Schiltz, M.4    Paciorek, W.5
  • 14
    • 0002583957 scopus 로고
    • DM': An automated procedure for phase improvement by density modification
    • Cowtan K. 'DM': An automated procedure for phase improvement by density modification. Joint CCP4 and ESF-EACBM Newsl Protein Crystallogr 1994;31:34-38.
    • (1994) Joint CCP4 and ESF-EACBM Newsl Protein Crystallogr , vol.31 , pp. 34-38
    • Cowtan, K.1
  • 16
  • 18
    • 0028103275 scopus 로고
    • The Ccp4 Suite - programs for protein crystallography
    • Bailey S. The Ccp4 Suite - programs for protein crystallography. Acta Crystallogr D Biol Crystallogr 1994;50:760-763.
    • (1994) Acta Crystallogr D Biol Crystallogr , vol.50 , pp. 760-763
    • Bailey, S.1
  • 19
    • 0015222647 scopus 로고
    • Interpretation of protein structures-estimation of static accessibility
    • Lee B, Richards FM. Interpretation of protein structures-estimation of static accessibility. J Mol Biol 1971;55:379-400.
    • (1971) J Mol Biol , vol.55 , pp. 379-400
    • Lee, B.1    Richards, F.M.2
  • 22
    • 0029109468 scopus 로고
    • Protein-protein interactions - a review of protein dimer structures
    • Jones S, Thornton JM. Protein-protein interactions - a review of protein dimer structures. Prog Biophys Mol Biol 1995;63:31-65.
    • (1995) Prog Biophys Mol Biol , vol.63 , pp. 31-65
    • Jones, S.1    Thornton, J.M.2
  • 23
    • 0026319199 scopus 로고
    • Protein folding and association - insights from the interfacial and thermodynamic properties of hydrocarbons
    • Nicholls A, Sharp KA, Honig B. Protein folding and association - insights from the interfacial and thermodynamic properties of hydrocarbons. Proteins 1991;11:281-296.
    • (1991) Proteins , vol.11 , pp. 281-296
    • Nicholls, A.1    Sharp, K.A.2    Honig, B.3
  • 24
    • 0027440362 scopus 로고
    • Protein-structure comparison by alignment of distance matrices
    • Holm L, Sander C. Protein-structure comparison by alignment of distance matrices. J Mol Biol 1993;233:123-138.
    • (1993) J Mol Biol , vol.233 , pp. 123-138
    • Holm, L.1    Sander, C.2
  • 25
    • 0343618468 scopus 로고    scopus 로고
    • Crystal structure of the ribosome recycling factor from Escherichia coli
    • Kim KK, Min K, Suh SW. Crystal structure of the ribosome recycling factor from Escherichia coli. Embo J 2000;19:2362-2370.
    • (2000) Embo J , vol.19 , pp. 2362-2370
    • Kim, K.K.1    Min, K.2    Suh, S.W.3
  • 26
    • 0035936826 scopus 로고    scopus 로고
    • Structure of a Bag/Hsc70 complex: Convergent functional evolution of Hsp70 nucleotide exchange factors
    • Sondermann H, Scheufler C, Schneider C, Hohfeld J, Hartl FU, Moarefi I. Structure of a Bag/Hsc70 complex: convergent functional evolution of Hsp70 nucleotide exchange factors. Science 2001;291:1553-1557.
    • (2001) Science , vol.291 , pp. 1553-1557
    • Sondermann, H.1    Scheufler, C.2    Schneider, C.3    Hohfeld, J.4    Hartl, F.U.5    Moarefi, I.6
  • 27
    • 0024534241 scopus 로고
    • Evidence That the leucine zipper is a coiled coil
    • Oshea EK, Rutkowski R, Kim PS. Evidence That the leucine zipper is a coiled coil. Science 1989;243:538-542.
    • (1989) Science , vol.243 , pp. 538-542
    • Oshea, E.K.1    Rutkowski, R.2    Kim, P.S.3
  • 28
    • 0027756896 scopus 로고
    • A switch between 2-stranded, 3-stranded and 4-stranded coiled coils in gcn4 leucine-zipper mutants
    • Harbury PB, Zhang T, Kim PS, Alber T. A switch between 2-stranded, 3-stranded and 4-stranded coiled coils in gcn4 leucine-zipper mutants. Science 1993;262:1401-1407.
    • (1993) Science , vol.262 , pp. 1401-1407
    • Harbury, P.B.1    Zhang, T.2    Kim, P.S.3    Alber, T.4
  • 29
    • 0345864027 scopus 로고    scopus 로고
    • The catalytic site atlas: A resource of catalytic sites and residues identified in enzymes using structural data
    • Porter CT, Bartlett GJ, Thornton JM. The catalytic site atlas: a resource of catalytic sites and residues identified in enzymes using structural data. Nucleic Acids Res 2004;32:D129-D133.
    • (2004) Nucleic Acids Res , vol.32
    • Porter, C.T.1    Bartlett, G.J.2    Thornton, J.M.3
  • 30
    • 0033613813 scopus 로고    scopus 로고
    • Recognition of spatial motifs in protein structures
    • Kleywegt GJ. Recognition of spatial motifs in protein structures. J Mol Biol 1999;285:1887-1897.
    • (1999) J Mol Biol , vol.285 , pp. 1887-1897
    • Kleywegt, G.J.1
  • 31
    • 33646112903 scopus 로고    scopus 로고
    • Antibacterial drug discovery and structure-based design
    • Barker JJ. Antibacterial drug discovery and structure-based design. Drug Discov Today 2006;11:391-404.
    • (2006) Drug Discov Today , vol.11 , pp. 391-404
    • Barker, J.J.1
  • 32
    • 11844249860 scopus 로고    scopus 로고
    • Affinity capillary electrophoresis for the screening of novel antimicrobial targets
    • Lewis LM, Engle LJ, Pierceall WE, Hughes DE, Shaw KJ. Affinity capillary electrophoresis for the screening of novel antimicrobial targets. J Biomol Screen 2004;9:303-308.
    • (2004) J Biomol Screen , vol.9 , pp. 303-308
    • Lewis, L.M.1    Engle, L.J.2    Pierceall, W.E.3    Hughes, D.E.4    Shaw, K.J.5


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