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Volumn 57, Issue 6, 2007, Pages 1243-1249

Halobacillus profundi sp. nov. and Halobacillus kuroshimensis sp. nov., moderately halophilic bacteria isolated from a deep-sea methane cold seep

Author keywords

[No Author keywords available]

Indexed keywords

ALCOHOL; CYCLOPROPANE; FATTY ACID; MENAQUINONE; METHANE; PEPTIDOGLYCAN; RNA 16S; UNSATURATED FATTY ACID;

EID: 34250697153     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.64817-0     Document Type: Article
Times cited : (36)

References (40)
  • 1
    • 0037343317 scopus 로고    scopus 로고
    • Production of amylase by newly isolated moderate halophile, Halobacillus sp. strain MA-2
    • Amoozegar, M. A., Malekzadeh, F. & Malik K. A. (2003a). Production of amylase by newly isolated moderate halophile, Halobacillus sp. strain MA-2. J Microbiol Methods 52, 353-359.
    • (2003) J Microbiol Methods , vol.52 , pp. 353-359
    • Amoozegar, M.A.1    Malekzadeh, F.2    Malik, K.A.3
  • 3
    • 0011090809 scopus 로고
    • Dot and slot blotting of DNA
    • 3rd edn, pp, Edited by F. M. Ausubel, R. Brent, R. E. Kingston, D. D. Moore, J. G. Seidman, J. A. Smith & K. Struhl. Chichester: Wiley
    • Brown, T. (1995). Dot and slot blotting of DNA. In Short Protocols in Molecular Biology, 3rd edn, pp. 2.33-2.35. Edited by F. M. Ausubel, R. Brent, R. E. Kingston, D. D. Moore, J. G. Seidman, J. A. Smith & K. Struhl. Chichester: Wiley.
    • (1995) Short Protocols in Molecular Biology
    • Brown, T.1
  • 5
    • 0000996639 scopus 로고
    • Sporosarcina halophila sp. nov., an obligate, slightly halophilic bacterium from salt marsh soils
    • Claus, D., Fahmy, F., Roff, H. & Tosunoglu, N. (1983). Sporosarcina halophila sp. nov., an obligate, slightly halophilic bacterium from salt marsh soils. Syst Appl Microbiol 4, 496-506.
    • (1983) Syst Appl Microbiol , vol.4 , pp. 496-506
    • Claus, D.1    Fahmy, F.2    Roff, H.3    Tosunoglu, N.4
  • 6
    • 0026755238 scopus 로고
    • Archaea in coastal marine environments
    • DeLong, E. F. (1992). Archaea in coastal marine environments. Proc Natl Acad Sci U S A 89, 5685-5689.
    • (1992) Proc Natl Acad Sci U S A , vol.89 , pp. 5685-5689
    • DeLong, E.F.1
  • 7
    • 0001991903 scopus 로고
    • Determinative methods of light microscopy
    • Edited by P. Gerhardt, R. G. E. Murray, R. N. Costilow, E. W. Nester, W. A. Wood, N. R. Krieg & G. B. Phillips. Washington, DC: American Society for Microbiology
    • Doetsch, R. N. (1981). Determinative methods of light microscopy. In Manual of Methods for General Bacteriology, pp. 21-33. Edited by P. Gerhardt, R. G. E. Murray, R. N. Costilow, E. W. Nester, W. A. Wood, N. R. Krieg & G. B. Phillips. Washington, DC: American Society for Microbiology.
    • (1981) Manual of Methods for General Bacteriology , pp. 21-33
    • Doetsch, R.N.1
  • 8
    • 34250732398 scopus 로고    scopus 로고
    • Felsenstein, J, 2004, PHYLIP, Phylogeny Inference Package, version 3.6. Distributed by the author. Department of Genome Sciences, University of Washington, Seattle, USA
    • Felsenstein, J. (2004). PHYLIP - Phylogeny Inference Package, version 3.6. Distributed by the author. Department of Genome Sciences, University of Washington, Seattle, USA.
  • 9
    • 0036301150 scopus 로고    scopus 로고
    • High-performance capillary electrophoretic method for the quantification of 5-methyl 2′-deoxycytidine in genomic DNA: Application to plant, animal and human cancer tissues
    • Fraga, M. F., Uriol, E., Diego, L. B., Berdasco, M., Esteller, M., Canal, M. J. & Rodriguez, R. (2002). High-performance capillary electrophoretic method for the quantification of 5-methyl 2′-deoxycytidine in genomic DNA: Application to plant, animal and human cancer tissues. Electrophoresis 23, 1677-1681.
    • (2002) Electrophoresis , vol.23 , pp. 1677-1681
    • Fraga, M.F.1    Uriol, E.2    Diego, L.B.3    Berdasco, M.4    Esteller, M.5    Canal, M.J.6    Rodriguez, R.7
  • 10
    • 34250763798 scopus 로고    scopus 로고
    • Fujikura, K., Aoki, M., Fujiwara, Y., Ichibayashi, S., Imamura, M., Ishibashi, J., Iwase, R., Kato, K., Kosaka, A. & other authors (2003 Report of investigation of vent and methane seep ecosystems by the crewed submersible 'Shinkai 2000' and the ROV 'Dolphin 3K' on the Hatoma and the Kuroshima Knolls, the Nansei-shoto area. JAMSTEC J Deep Sea Res 22, 21-30 (in Japanese with English abstract).
    • Fujikura, K., Aoki, M., Fujiwara, Y., Ichibayashi, S., Imamura, M., Ishibashi, J., Iwase, R., Kato, K., Kosaka, A. & other authors (2003 Report of investigation of vent and methane seep ecosystems by the crewed submersible 'Shinkai 2000' and the ROV 'Dolphin 3K' on the Hatoma and the Kuroshima Knolls, the Nansei-shoto area. JAMSTEC J Deep Sea Res 22, 21-30 (in Japanese with English abstract).
  • 11
    • 0029661576 scopus 로고    scopus 로고
    • Analytical approaches to the characterization of samples of microbial community using patterns of potential C source utilization
    • Garland, J. L. (1996). Analytical approaches to the characterization of samples of microbial community using patterns of potential C source utilization. Soil Biol Biochem 28, 213-221.
    • (1996) Soil Biol Biochem , vol.28 , pp. 213-221
    • Garland, J.L.1
  • 12
    • 0842287956 scopus 로고    scopus 로고
    • Potential and limitation of BIOLOG for microbial community analysis
    • Edited by C. R. Bell, M. Brylinsky & P. Johnson-Green. Halifax, Nova Scotia: Atlantic Canada Society for Microbial Ecology
    • Garland, J. L. (1999). Potential and limitation of BIOLOG for microbial community analysis. In Microbial Biosystems: New Frontiers. Proceedings of the 8th International Symposium on Microbial Ecology. Edited by C. R. Bell, M. Brylinsky & P. Johnson-Green. Halifax, Nova Scotia: Atlantic Canada Society for Microbial Ecology.
    • (1999) Microbial Biosystems: New Frontiers. Proceedings of the 8th International Symposium on Microbial Ecology
    • Garland, J.L.1
  • 13
    • 0025919424 scopus 로고
    • Classification and characterization of heterotrophic microbial communities on the basis of patterns of community-level sole-carbon-source utilization
    • Garland, J. L. & Mills, A. L. (1991). Classification and characterization of heterotrophic microbial communities on the basis of patterns of community-level sole-carbon-source utilization. Appl Environ Microbiol 57, 2351-2359.
    • (1991) Appl Environ Microbiol , vol.57 , pp. 2351-2359
    • Garland, J.L.1    Mills, A.L.2
  • 14
    • 33846970557 scopus 로고    scopus 로고
    • Application of CE for determination of DNA base composition
    • Hua, N.-P. & Naganuma, T. (2007). Application of CE for determination of DNA base composition. Electrophoresis 28, 366-372.
    • (2007) Electrophoresis , vol.28 , pp. 366-372
    • Hua, N.-P.1    Naganuma, T.2
  • 15
    • 10444248885 scopus 로고    scopus 로고
    • Characterization of C1-metabolizing prokaryotic communities in methane seep habitats at the Kuroshima Knoll, southern Ryukyu Arc, by analyzing pmoA, mmoX, mxaF, mcrA, and 16S rRNA genes
    • Inagaki, F., Tsunogai, U., Suzuki, M., Kosaka, A., Machiyama, H., Takai, K, Nunoura, T., Nealson, K. H. & Hirokoshi, K. (2004). Characterization of C1-metabolizing prokaryotic communities in methane seep habitats at the Kuroshima Knoll, southern Ryukyu Arc, by analyzing pmoA, mmoX, mxaF, mcrA, and 16S rRNA genes. Appl Environ Microbiol 70, 7445-7455.
    • (2004) Appl Environ Microbiol , vol.70 , pp. 7445-7455
    • Inagaki, F.1    Tsunogai, U.2    Suzuki, M.3    Kosaka, A.4    Machiyama, H.5    Takai, K.6    Nunoura, T.7    Nealson, K.H.8    Hirokoshi, K.9
  • 16
    • 77956800518 scopus 로고
    • Lipid and cell wall analysis in bacterial systematics
    • Komagata, K. & Suzuki, K. (1987). Lipid and cell wall analysis in bacterial systematics. Methods Microbiol 19, 161-207.
    • (1987) Methods Microbiol , vol.19 , pp. 161-207
    • Komagata, K.1    Suzuki, K.2
  • 17
    • 3242810318 scopus 로고    scopus 로고
    • MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment
    • Kumar, S., Tamura, K. & Nei, M. (2004). MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5, 150-163.
    • (2004) Brief Bioinform , vol.5 , pp. 150-163
    • Kumar, S.1    Tamura, K.2    Nei, M.3
  • 18
    • 26244446953 scopus 로고    scopus 로고
    • Halobacillus dabanensis sp. nov. and Halobacillus aidingensis sp. nov., isolated from salt lakes in Xinjiang, China
    • Liu, W. Y., Zeng, J., Wang, L,. Dou, Y. T. & Yang, S. S. (2005 . Halobacillus dabanensis sp. nov. and Halobacillus aidingensis sp. nov., isolated from salt lakes in Xinjiang, China. Int J Syst Evol Microbiol 55, 1991-1996.
    • (2005) Int J Syst Evol Microbiol , vol.55 , pp. 1991-1996
    • Liu, W.Y.1    Zeng, J.2    Wang, L.3    Dou, Y.T.4    Yang, S.S.5
  • 19
    • 0033972849 scopus 로고    scopus 로고
    • Changes in protein synthesis during the adaptation of Bacillus subtilis to anaerobic conditions
    • Marino, M., Hoffmann, T., Schmid, R., Mobitz, H. & Jahn, D. (2000 Changes in protein synthesis during the adaptation of Bacillus subtilis to anaerobic conditions. Microbiology 146, 97-105.
    • (2000) Microbiology , vol.146 , pp. 97-105
    • Marino, M.1    Hoffmann, T.2    Schmid, R.3    Mobitz, H.4    Jahn, D.5
  • 20
    • 0035165629 scopus 로고    scopus 로고
    • Modulation of anaerobic energy metabolism of Bacillus subtilis by arfM (ywiD)
    • Marino, M., Ramos, H. C., Hoffmann, T., Glaser, P. & Jahn, D. (2001) Modulation of anaerobic energy metabolism of Bacillus subtilis by arfM (ywiD). J Bacteriol 183, 6815-6821.
    • (2001) J Bacteriol , vol.183 , pp. 6815-6821
    • Marino, M.1    Ramos, H.C.2    Hoffmann, T.3    Glaser, P.4    Jahn, D.5
  • 21
    • 0000198211 scopus 로고
    • Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography
    • Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39 159-167.
    • (1989) Int J Syst Bacteriol , vol.39 , pp. 159-167
    • Mesbah, M.1    Premachandran, U.2    Whitman, W.B.3
  • 22
    • 0031080294 scopus 로고    scopus 로고
    • Identification of isoprenoid quinones by frit-FAB liquid chromatography-mass spectrometry for the chemotaxonomy of microorganisms
    • Nishijima, M., Araki-Sakai, M. & Sano, H. (1997). Identification of isoprenoid quinones by frit-FAB liquid chromatography-mass spectrometry for the chemotaxonomy of microorganisms. J Microbiol Methods 28, 113-122.
    • (1997) J Microbiol Methods , vol.28 , pp. 113-122
    • Nishijima, M.1    Araki-Sakai, M.2    Sano, H.3
  • 24
    • 34250769041 scopus 로고    scopus 로고
    • Distribution of euryhaline halophilic microorganisms at non-hypersaline environments
    • 26-29 May, Chiba, Japan. Abstract B001-p005
    • Okamoto, T. & Naganuma, T. (2003). Distribution of euryhaline halophilic microorganisms at non-hypersaline environments. In Abstracts of the Earth and Planetary Science Joint Meeting, 26-29 May 2003, Chiba, Japan. Abstract B001-p005.
    • (2003) Abstracts of the Earth and Planetary Science Joint Meeting
    • Okamoto, T.1    Naganuma, T.2
  • 25
    • 0012183368 scopus 로고    scopus 로고
    • Phylogenetic similarity of aerobic gram-negative halophilic bacteria from a deep-sea hydrothermal mound and Antarctic habitats
    • Okamoto, T., Fujioka, K. & Naganuma, T. (2001). Phylogenetic similarity of aerobic gram-negative halophilic bacteria from a deep-sea hydrothermal mound and Antarctic habitats. Polar Biosci 14, 1-9.
    • (2001) Polar Biosci , vol.14 , pp. 1-9
    • Okamoto, T.1    Fujioka, K.2    Naganuma, T.3
  • 26
    • 0023989064 scopus 로고
    • Improved tools for biological sequence comparison
    • Pearson, W. R. & Lipman, D. J. (1988). Improved tools for biological sequence comparison. Proc Natl Acad Sci U S A 85, 2444-2448.
    • (1988) Proc Natl Acad Sci U S A , vol.85 , pp. 2444-2448
    • Pearson, W.R.1    Lipman, D.J.2
  • 27
    • 0347081725 scopus 로고    scopus 로고
    • Detection of indigenous Halobacillus populations in damaged ancient wall painting and building materials: Molecular monitoring and cultivation
    • Pinar, G., Ramos, C., Rolleke, S., Schabereiter-Gurtner, C., Vybiral, D., Lubitz, W. & Danner, E. B. (2001). Detection of indigenous Halobacillus populations in damaged ancient wall painting and building materials: Molecular monitoring and cultivation. Appl Environ Microbiol 67, 4891-4895.
    • (2001) Appl Environ Microbiol , vol.67 , pp. 4891-4895
    • Pinar, G.1    Ramos, C.2    Rolleke, S.3    Schabereiter-Gurtner, C.4    Vybiral, D.5    Lubitz, W.6    Danner, E.B.7
  • 28
    • 1642307505 scopus 로고    scopus 로고
    • Biomineralization of carbonates by Halobacillus trueperi in solid and liquid media with different salinities
    • Rivadeneyra, M. A., Párraga, J., Delgado, R., Ramos-Cormenzana, A. & Delgado, G. (2004). Biomineralization of carbonates by Halobacillus trueperi in solid and liquid media with different salinities. FEMS Microbiol Ecol 48, 39-46.
    • (2004) FEMS Microbiol Ecol , vol.48 , pp. 39-46
    • Rivadeneyra, M.A.1    Párraga, J.2    Delgado, R.3    Ramos-Cormenzana, A.4    Delgado, G.5
  • 30
    • 0000221252 scopus 로고
    • General characterization
    • Edited by P. Gerhardt, R. G. E. Murray, R. N. Costilow, E. W. Nester, W. A. Wood, N. R. Krieg & G. B. Phillips. Washington, DC: American Society for Microbiology
    • Smibert, R. M. & Krieg, N. R. (1981). General characterization. In Manual of Methods for General Bacteriology, pp. 409-443. Edited by P. Gerhardt, R. G. E. Murray, R. N. Costilow, E. W. Nester, W. A. Wood, N. R. Krieg & G. B. Phillips. Washington, DC: American Society for Microbiology.
    • (1981) Manual of Methods for General Bacteriology , pp. 409-443
    • Smibert, R.M.1    Krieg, N.R.2
  • 31
    • 0029977615 scopus 로고    scopus 로고
    • Halobacillus gen. nov., with descriptions of Halobacillus litoralis sp. nov. and Halobacillus trueperi sp. nov., and transfer of Sporosarcina halophila to Halobacillus halophilus comb. nov
    • Spring, S., Ludwig, W., Marquez, M. C., Ventosa, A. & Schleifer, K. H. (1996). Halobacillus gen. nov., with descriptions of Halobacillus litoralis sp. nov. and Halobacillus trueperi sp. nov., and transfer of Sporosarcina halophila to Halobacillus halophilus comb. nov. Int J Syst Bacteriol 46, 492-496.
    • (1996) Int J Syst Bacteriol , vol.46 , pp. 492-496
    • Spring, S.1    Ludwig, W.2    Marquez, M.C.3    Ventosa, A.4    Schleifer, K.H.5
  • 32
    • 0021715576 scopus 로고
    • Determination of DNA base composition by reversed-phase high-performance liquid chromatography
    • Tamaoka, J. & Komagata, K. (1984). Determination of DNA base composition by reversed-phase high-performance liquid chromatography. FEMS Microbiol Lett 25, 125-128.
    • (1984) FEMS Microbiol Lett , vol.25 , pp. 125-128
    • Tamaoka, J.1    Komagata, K.2
  • 33
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL_W windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_W windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
    • (1997) Nucleic Acids Res , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 35
    • 0001279038 scopus 로고
    • Preparation of genomic DNA from bacteria
    • 3rd edn, pp, Edited by F. M. Ausubel, R. Brent, R. E. Kingston, D. D. Moore, J. G. Seidman, J. A. Smith & K. Struhl. Chichester: Wiley
    • Wilson, K. (1995). Preparation of genomic DNA from bacteria. In Short Protocols in Molecular Biology, 3rd edn, pp. 2.11-2.13. Edited by F. M. Ausubel, R. Brent, R. E. Kingston, D. D. Moore, J. G. Seidman, J. A. Smith & K. Struhl. Chichester: Wiley.
    • (1995) Short Protocols in Molecular Biology
    • Wilson, K.1
  • 36
    • 0037048510 scopus 로고    scopus 로고
    • Antifungal cyclopeptides from Halobacillus litoralis YS3106 of marine origin
    • Yang, L., Tan, R.-X., Wang, Q., Huang, W.-Y. & Yin, Y.-X. (2002 . Antifungal cyclopeptides from Halobacillus litoralis YS3106 of marine origin. Tetrahedron Lett 43, 6545-6548.
    • (2002) Tetrahedron Lett , vol.43 , pp. 6545-6548
    • Yang, L.1    Tan, R.-X.2    Wang, Q.3    Huang, W.-Y.4    Yin, Y.-X.5
  • 37
    • 0033891425 scopus 로고    scopus 로고
    • Global gene expression profiles of Bacillus subtilis grown under anaerobic conditions
    • Ye, R. W., Tao, W., Bedzyk, L., Young, T., Chen, M. & Li, L. (2000) Global gene expression profiles of Bacillus subtilis grown under anaerobic conditions. J Bacteriol 182, 4458-4465.
    • (2000) J Bacteriol , vol.182 , pp. 4458-4465
    • Ye, R.W.1    Tao, W.2    Bedzyk, L.3    Young, T.4    Chen, M.5    Li, L.6
  • 38
    • 0038655233 scopus 로고    scopus 로고
    • Halobacillus salinus sp. nov., isolated from a salt lake on the coast of the East Sea in Korea
    • Yoon, J. H., Kang, K. H. & Park, Y. H. (2003). Halobacillus salinus sp. nov., isolated from a salt lake on the coast of the East Sea in Korea. Int J Syst Evol Microbiol 53, 687-693.
    • (2003) Int J Syst Evol Microbiol , vol.53 , pp. 687-693
    • Yoon, J.H.1    Kang, K.H.2    Park, Y.H.3
  • 39
    • 4644220227 scopus 로고    scopus 로고
    • Halobacillus locisalis sp. nov., a halophilic bacterium isolated from a marine solar saltern of the Yellow Sea in Korea
    • Yoon, J. H., Kang, K. H., Oh, T. K. & Park, Y. H. (2004). Halobacillus locisalis sp. nov., a halophilic bacterium isolated from a marine solar saltern of the Yellow Sea in Korea. Extremophiles 8, 23-28.
    • (2004) Extremophiles , vol.8 , pp. 23-28
    • Yoon, J.H.1    Kang, K.H.2    Oh, T.K.3    Park, Y.H.4
  • 40
    • 27844506504 scopus 로고    scopus 로고
    • Halobacillus yeomjeoni sp. nov., isolated from a marine solar saltern in Korea
    • Yoon, J.-H., Kang, S.-J., Lee, C.-H, Oh, H. W. & Oh, T.-K. (2005 . Halobacillus yeomjeoni sp. nov., isolated from a marine solar saltern in Korea. Int J Syst Evol Microbiol 55, 2413-2417.
    • (2005) Int J Syst Evol Microbiol , vol.55 , pp. 2413-2417
    • Yoon, J.-H.1    Kang, S.-J.2    Lee, C.-H.3    Oh, H.W.4    Oh, T.-K.5


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