An efficient procedure for isolating microsatellite DNAs from sea cucumber (Apostichopus japonicus)

Journal of Ocean University of China

Volumn 6, Issue 1, 2007, Pages 12-15

  Hu, Jingjie ^a   Zhan, Aibin ^a   Lu, Wei ^a   Hu, Xiaoli ^a   Bao, Zhenmin ^a  

^a OCEAN UNIVERSITY OF CHINA   (China)

Author keywords

Apostichopus japonicus; Enrichment; Sea cucumber; SSRs

Indexed keywords

APOSTICHOPUS JAPONICUS; HOLOTHUROIDEA;

EID: 34250632415     PISSN: 16725182     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11802-007-0012-y     Document Type: Article

References (16)

1. Brenig, B., and G. Brem, 1991. DNA cloning of sequence tagged microsatellite sites by DNA affinity chromatography. Nucleic Acids Res., 19: 5441.
2. Cordeiro, G. M., T. L. Maguire, K. J. Edwards, and R. Henry, 1999. Optimisation of a microsatellite enrichment technique in Saccharum spp. Plant Mol. Biol. Rep., 17: 225-229.
3. Edwards, K. J., J. H. Baker, A. Daly, C. Jones, and A. Karp, 1996. Microsatellite libraries enriched for several microsatellite sequences in plants. Biotechniques, 20: 758-760.
4. Hamilton, M. B., E. L. Pincus, A. Di-Fiore, and R.C. Fleischer, 1999. Universal linker and ligation procedures for construction of genomic DNA libraries enriched for microsatellites. Biotechniques, 27: 500-507.
5. Ito, T., C. L. Smith, and C. R. Cantor, 1992. Sequence-specific DNA purification by triplex affinity capture. P. Natl. Acad. Sci. USA, 89: 495-498.
6. Jakse, J., and B. Javornik, 2001. High throughput isolation of microsatellites in hop (Humulus lupulus L.). Plant Mol. Biol. Rep., 19: 217-226.
7. Karagyozov, L., I. D. Kalcheva, and V. M. Chapman, 1993. Construction of random small-insert genomic libraries highly enriched for simple sequences repeats. Nucleic Acids Res., 21: 3911-3912.
8. Kijas, J. M., J. C. Fowler, C. A. Garbett, and M. R. Thomas, 1994. Enrichment of microsatellites from the citrus genome using biotinylated oligonucleotide sequences bound to stretavidin-coated magnetic particles. Biotechniques, 16: 656-662.
9. Nishikawa, N., M. Oishi, and R. Kiyama, 1995. Construction of a human genomic library of clones containing poly (dGdA). poly (dTdC) tracts by Mg 2+ -dependent triplex affinity capture-DNA polymorphism associated with the tracts. J. Biol. Chem., 207: 9 258-9 264.
10. Ostrander, E. A., P. M. Jong, J. Rine, and G. Duyk, 1992. Construction of small-insert genomic DNA libraries highly enriched for microsatellite repeat sequences. P. Natl. Acad. Sci. USA, 89: 3 419-3 423.
11. Powell, W., G. C. Machray, and J. Provan, 1996. Polymorphism revealed by simple sequence repeats. Trends Plant Sci., 7: 215-222.
12. Ramsay, L., M. Macaulay, L. Cardle, M. Morgante, S. Degli Ivanissevich, et al., 1999. Intimate association of microsatellite repeats with retrotransposons and other dispersed repetitive elements in barley. Plant J., 17: 415-425.
13. Sambrook, J., E. F. Fritsch, and T. Maniatis, 1989. Molecular Cloning: A Laboratory Manual. Cold Spring Harbour Laboratory, Cold Spring Harbour, New York, 2222pp.
14. Sun, X., Z. Jia, D. Wei, C. Lu, and L. Liang, 2005. Comparison between magnetic beads enriched and small inserted fragment library for microsatellite sequences of common carp. J. Fishery Sci. Chin., 12: 126-132 (in Chinese with English abstract).
15. Takahashi, H., K. Nirasawa, and T. Furukawa, 1996. An efficient method to clone chicken microsatellite repeat sequences. Jpn. Poultry Sci., 33: 292-299.
16. Tohn, G., Z. Gaspari, and J. Jurka, 2000. Microsatellites in different eukaryotic genomes: Survey and analysis. Genome Res., 10: 967-981.