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Volumn 370, Issue 5, 2007, Pages 837-845

Elastic Behavior of RecA-DNA Helical Filaments

Author keywords

ATPase activity; conformational change; homologous recombination; RecA; single molecular experiments

Indexed keywords

ADENOSINE TRIPHOSPHATE; BUFFER; DEOXYADENOSINE TRIPHOSPHATE; FLUORESCENT DYE; RECA PROTEIN; SINGLE STRANDED DNA;

EID: 34250160539     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jmb.2007.05.044     Document Type: Article
Times cited : (17)

References (37)
  • 1
    • 0024360742 scopus 로고
    • Helical RecA nucleoprotein filaments mediate homologous pairing and strand exchange
    • Radding C.M. Helical RecA nucleoprotein filaments mediate homologous pairing and strand exchange. Biochim. Biophys. Acta 1008 (1989) 131-145
    • (1989) Biochim. Biophys. Acta , vol.1008 , pp. 131-145
    • Radding, C.M.1
  • 2
    • 0022707021 scopus 로고
    • RecA-DNA helical complexes in genetic recombination
    • Stasiak A., and Egelman E.H. RecA-DNA helical complexes in genetic recombination. Biochem. Soc. Trans. 14 (1986) 218-220
    • (1986) Biochem. Soc. Trans. , vol.14 , pp. 218-220
    • Stasiak, A.1    Egelman, E.H.2
  • 3
    • 0030633568 scopus 로고    scopus 로고
    • RecA protein: structure, function, and role in recombinational DNA repair
    • Roca A.I., and Cox M.M. RecA protein: structure, function, and role in recombinational DNA repair. Prog. Nucl. Acid Res. Mol. Biol. 56 (1997) 129-223
    • (1997) Prog. Nucl. Acid Res. Mol. Biol. , vol.56 , pp. 129-223
    • Roca, A.I.1    Cox, M.M.2
  • 4
    • 0001865832 scopus 로고    scopus 로고
    • DNA strand exchange proteins: a biochemical and physical comparison
    • Bianco P.R., Tracy R.B., and Kowalczykowski S.C. DNA strand exchange proteins: a biochemical and physical comparison. Front. Biosci. 3 (1998) D570-D603
    • (1998) Front. Biosci. , vol.3
    • Bianco, P.R.1    Tracy, R.B.2    Kowalczykowski, S.C.3
  • 5
  • 6
    • 0346660225 scopus 로고
    • Initiation of general recombination catalyzed in vitro by the recA protein of Escherichia coli
    • McEntee K., Weinstock G.M., and Lehman I.R. Initiation of general recombination catalyzed in vitro by the recA protein of Escherichia coli. Proc. Natl Acad. Sci. USA 76 (1979) 2615-2619
    • (1979) Proc. Natl Acad. Sci. USA , vol.76 , pp. 2615-2619
    • McEntee, K.1    Weinstock, G.M.2    Lehman, I.R.3
  • 7
    • 0019853508 scopus 로고
    • Directionality and polarity in recA protein-promoted branch migration
    • Cox M.M., and Lehman I.R. Directionality and polarity in recA protein-promoted branch migration. Proc. Natl Acad. Sci. USA 78 (1981) 6018-6022
    • (1981) Proc. Natl Acad. Sci. USA , vol.78 , pp. 6018-6022
    • Cox, M.M.1    Lehman, I.R.2
  • 8
    • 0019867784 scopus 로고
    • Polarity of heteroduplex formation promoted by Escherichia coli recA protein
    • Kahn R., Cunningham R.P., DasGupta C., and Radding C.M. Polarity of heteroduplex formation promoted by Escherichia coli recA protein. Proc. Natl Acad. Sci. USA 78 (1981) 4786-4790
    • (1981) Proc. Natl Acad. Sci. USA , vol.78 , pp. 4786-4790
    • Kahn, R.1    Cunningham, R.P.2    DasGupta, C.3    Radding, C.M.4
  • 9
    • 0019771908 scopus 로고
    • Heteroduplex formation by recA protein: polarity of strand exchanges
    • West S.C., Cassuto E., and Howard-Flanders P. Heteroduplex formation by recA protein: polarity of strand exchanges. Proc. Natl Acad. Sci. USA 78 (1981) 6149-6153
    • (1981) Proc. Natl Acad. Sci. USA , vol.78 , pp. 6149-6153
    • West, S.C.1    Cassuto, E.2    Howard-Flanders, P.3
  • 10
    • 0023069449 scopus 로고
    • Enzymes of general recombination
    • Cox M.M., and Lehman I.R. Enzymes of general recombination. Annu. Rev. Biochem. 56 (1987) 229-262
    • (1987) Annu. Rev. Biochem. , vol.56 , pp. 229-262
    • Cox, M.M.1    Lehman, I.R.2
  • 11
    • 0024285049 scopus 로고
    • The mechanics of winding and unwinding helices in recombination: torsional stress associated with strand transfer promoted by RecA protein
    • Honigberg S.M., and Radding C.M. The mechanics of winding and unwinding helices in recombination: torsional stress associated with strand transfer promoted by RecA protein. Cell 54 (1988) 525-532
    • (1988) Cell , vol.54 , pp. 525-532
    • Honigberg, S.M.1    Radding, C.M.2
  • 12
    • 0026702293 scopus 로고
    • Torsional stress generated by RecA protein during DNA strand exchange separates strands of a heterologous insert
    • Jwang B., and Radding C.M. Torsional stress generated by RecA protein during DNA strand exchange separates strands of a heterologous insert. Proc. Natl Acad. Sci. USA 89 (1992) 7596-7600
    • (1992) Proc. Natl Acad. Sci. USA , vol.89 , pp. 7596-7600
    • Jwang, B.1    Radding, C.M.2
  • 13
    • 0029911725 scopus 로고    scopus 로고
    • Evidence for the coupling of ATP hydrolysis to the final (extension) phase of RecA protein-mediated DNA strand exchange
    • Bedale W.A., and Cox M.M. Evidence for the coupling of ATP hydrolysis to the final (extension) phase of RecA protein-mediated DNA strand exchange. J. Biol. Chem. 271 (1996) 5725-5732
    • (1996) J. Biol. Chem. , vol.271 , pp. 5725-5732
    • Bedale, W.A.1    Cox, M.M.2
  • 14
    • 0030794026 scopus 로고    scopus 로고
    • RecA as a motor protein. Testing models for the role of ATP hydrolysis in DNA strand exchange
    • MacFarland K.J., Shan Q., Inman R.B., and Cox M.M. RecA as a motor protein. Testing models for the role of ATP hydrolysis in DNA strand exchange. J. Biol. Chem. 272 (1997) 17675-17685
    • (1997) J. Biol. Chem. , vol.272 , pp. 17675-17685
    • MacFarland, K.J.1    Shan, Q.2    Inman, R.B.3    Cox, M.M.4
  • 15
    • 0242692609 scopus 로고    scopus 로고
    • The bacterial RecA protein as a motor protein
    • Cox M.M. The bacterial RecA protein as a motor protein. Annu. Rev. Microbiol. 57 (2003) 551-577
    • (2003) Annu. Rev. Microbiol. , vol.57 , pp. 551-577
    • Cox, M.M.1
  • 16
    • 0019955608 scopus 로고
    • Electron microscopic visualization of recA-DNA filaments: evidence for a cyclic extension of duplex DNA
    • Dunn K., Chrysogelos S., and Griffith J. Electron microscopic visualization of recA-DNA filaments: evidence for a cyclic extension of duplex DNA. Cell 28 (1982) 757-765
    • (1982) Cell , vol.28 , pp. 757-765
    • Dunn, K.1    Chrysogelos, S.2    Griffith, J.3
  • 17
    • 0025079221 scopus 로고
    • Complexes of RecA protein in solution. A study by small angle neutron scattering
    • DiCapua E., Schnarr M., Ruigrok R.W., Lindner P., and Timmins P.A. Complexes of RecA protein in solution. A study by small angle neutron scattering. J. Mol. Biol. 214 (1990) 557-570
    • (1990) J. Mol. Biol. , vol.214 , pp. 557-570
    • DiCapua, E.1    Schnarr, M.2    Ruigrok, R.W.3    Lindner, P.4    Timmins, P.A.5
  • 18
    • 0034671684 scopus 로고    scopus 로고
    • Crystal structures of Mycobacterium tuberculosis RecA and its complex with ADP-AlF(4): implications for decreased ATPase activity and molecular aggregation
    • Datta S., Prabu M.M., Vaze M.B., Ganesh N., Chandra N.R., Muniyappa K., and Vijayan M. Crystal structures of Mycobacterium tuberculosis RecA and its complex with ADP-AlF(4): implications for decreased ATPase activity and molecular aggregation. Nucl. Acids Res. 28 (2000) 4964-4973
    • (2000) Nucl. Acids Res. , vol.28 , pp. 4964-4973
    • Datta, S.1    Prabu, M.M.2    Vaze, M.B.3    Ganesh, N.4    Chandra, N.R.5    Muniyappa, K.6    Vijayan, M.7
  • 20
    • 0006704537 scopus 로고
    • Isolation and visualization of active presynaptic filaments of recA protein and single-stranded DNA
    • Flory J., Tsang S.S., and Muniyappa K. Isolation and visualization of active presynaptic filaments of recA protein and single-stranded DNA. Proc. Natl Acad. Sci. USA 81 (1984) 7026-7030
    • (1984) Proc. Natl Acad. Sci. USA , vol.81 , pp. 7026-7030
    • Flory, J.1    Tsang, S.S.2    Muniyappa, K.3
  • 21
    • 0023008741 scopus 로고
    • Structure of helical RecA-DNA complexes. Complexes formed in the presence of ATP-gamma-S or ATP
    • Egelman E.H., and Stasiak A. Structure of helical RecA-DNA complexes. Complexes formed in the presence of ATP-gamma-S or ATP. J. Mol. Biol. 191 (1986) 677-697
    • (1986) J. Mol. Biol. , vol.191 , pp. 677-697
    • Egelman, E.H.1    Stasiak, A.2
  • 22
    • 0023041833 scopus 로고
    • Fibers of RecA protein and complexes of RecA protein and single-stranded φX174 DNA as visualized by negative-stain electron microscopy
    • Williams R.C., and Spengler S.J. Fibers of RecA protein and complexes of RecA protein and single-stranded φX174 DNA as visualized by negative-stain electron microscopy. J. Mol. Biol. 187 (1986) 109-118
    • (1986) J. Mol. Biol. , vol.187 , pp. 109-118
    • Williams, R.C.1    Spengler, S.J.2
  • 23
    • 0026666652 scopus 로고
    • Structural data suggest that the active and inactive forms of the RecA filament are not simply interconvertible
    • Yu X., and Egelman E.H. Structural data suggest that the active and inactive forms of the RecA filament are not simply interconvertible. J. Mol. Biol. 227 (1992) 334-346
    • (1992) J. Mol. Biol. , vol.227 , pp. 334-346
    • Yu, X.1    Egelman, E.H.2
  • 25
    • 0346850027 scopus 로고    scopus 로고
    • Direct evaluation of a mechanism for activation of the RecA nucleoprotein filament
    • Roca A.I., and Singleton S.F. Direct evaluation of a mechanism for activation of the RecA nucleoprotein filament. J. Am. Chem. Soc. 125 (2003) 15366-15375
    • (2003) J. Am. Chem. Soc. , vol.125 , pp. 15366-15375
    • Roca, A.I.1    Singleton, S.F.2
  • 26
    • 0024999088 scopus 로고
    • Inhibition of recA protein promoted ATP hydrolysis. 1. ATP gamma S and ADP are antagonistic inhibitors
    • Lee J.W., and Cox M.M. Inhibition of recA protein promoted ATP hydrolysis. 1. ATP gamma S and ADP are antagonistic inhibitors. Biochemistry 29 (1990) 7666-7676
    • (1990) Biochemistry , vol.29 , pp. 7666-7676
    • Lee, J.W.1    Cox, M.M.2
  • 27
    • 0026500416 scopus 로고
    • The structure of the E. coli recA protein monomer and polymer
    • Story R.M., Weber I.T., and Steitz T.A. The structure of the E. coli recA protein monomer and polymer. Nature 355 (1992) 318-325
    • (1992) Nature , vol.355 , pp. 318-325
    • Story, R.M.1    Weber, I.T.2    Steitz, T.A.3
  • 28
    • 0024843435 scopus 로고
    • Visualization of RecA protein and its complexes with DNA by quick-freeze/deep-etch electron microscopy
    • Heuser J., and Griffith J. Visualization of RecA protein and its complexes with DNA by quick-freeze/deep-etch electron microscopy. J. Mol. Biol. 210 (1989) 473-484
    • (1989) J. Mol. Biol. , vol.210 , pp. 473-484
    • Heuser, J.1    Griffith, J.2
  • 29
    • 0035902614 scopus 로고    scopus 로고
    • Domain structure and dynamics in the helical filaments formed by RecA and Rad51 on DNA
    • Yu X., Jacobs S.A., West S.C., Ogawa T., and Egelman E.H. Domain structure and dynamics in the helical filaments formed by RecA and Rad51 on DNA. Proc. Natl Acad. Sci. USA 98 (2001) 8419-8424
    • (2001) Proc. Natl Acad. Sci. USA , vol.98 , pp. 8419-8424
    • Yu, X.1    Jacobs, S.A.2    West, S.C.3    Ogawa, T.4    Egelman, E.H.5
  • 31
    • 0343930711 scopus 로고    scopus 로고
    • RecA protein dynamics in the interior of RecA nucleoprotein filaments
    • Shan Q., and Cox M.M. RecA protein dynamics in the interior of RecA nucleoprotein filaments. J. Mol. Biol. 257 (1996) 756-774
    • (1996) J. Mol. Biol. , vol.257 , pp. 756-774
    • Shan, Q.1    Cox, M.M.2
  • 32
  • 33
    • 0021215606 scopus 로고
    • Mechanism of the concerted action of recA protein and helix- destabilizing proteins in homologous recombination
    • Muniyappa K., Shaner S.L., Tsang S.S., and Radding C.M. Mechanism of the concerted action of recA protein and helix- destabilizing proteins in homologous recombination. Proc. Natl Acad. Sci. USA 81 (1984) 2757-2761
    • (1984) Proc. Natl Acad. Sci. USA , vol.81 , pp. 2757-2761
    • Muniyappa, K.1    Shaner, S.L.2    Tsang, S.S.3    Radding, C.M.4
  • 34
    • 0022218737 scopus 로고
    • Intermediates in homologous pairing promoted by recA protein. Isolation and characterization of active presynaptic complexes
    • Tsang S.S., Muniyappa K., Azhderian E., Gonda D. K., Radding C.M., Flory J., and Chase J.W. Intermediates in homologous pairing promoted by recA protein. Isolation and characterization of active presynaptic complexes. J. Mol. Biol. 185 (1985) 295-309
    • (1985) J. Mol. Biol. , vol.185 , pp. 295-309
    • Tsang, S.S.1    Muniyappa, K.2    Azhderian, E.3    Gonda, D. K.4    Radding, C.M.5    Flory, J.6    Chase, J.W.7
  • 35
    • 0030998268 scopus 로고    scopus 로고
    • An extended DNA structure through deoxyribose-base stacking induced by RecA protein
    • Nishinaka T., Ito Y., Yokoyama S., and Shibata T. An extended DNA structure through deoxyribose-base stacking induced by RecA protein. Proc. Natl Acad. Sci. USA 94 (1997) 6623-6628
    • (1997) Proc. Natl Acad. Sci. USA , vol.94 , pp. 6623-6628
    • Nishinaka, T.1    Ito, Y.2    Yokoyama, S.3    Shibata, T.4
  • 36
    • 0032530848 scopus 로고    scopus 로고
    • Base pair switching by interconversion of sugar puckers in DNA extended by proteins of RecA-family: a model for homology search in homologous genetic recombination
    • Nishinaka T., Shinohara A., Ito Y., Yokoyama S., and Shibata T. Base pair switching by interconversion of sugar puckers in DNA extended by proteins of RecA-family: a model for homology search in homologous genetic recombination. Proc. Natl Acad. Sci. USA 95 (1998) 11071-11076
    • (1998) Proc. Natl Acad. Sci. USA , vol.95 , pp. 11071-11076
    • Nishinaka, T.1    Shinohara, A.2    Ito, Y.3    Yokoyama, S.4    Shibata, T.5
  • 37
    • 0035902468 scopus 로고    scopus 로고
    • Homologous genetic recombination as an intrinsic dynamic property of a DNA structure induced by RecA/Rad51-family proteins: a possible advantage of DNA over RNA as genomic material
    • Shibata T., Nishinaka T., Mikawa T., Aihara H., Kurumizaka H., Yokoyama S., and Ito Y. Homologous genetic recombination as an intrinsic dynamic property of a DNA structure induced by RecA/Rad51-family proteins: a possible advantage of DNA over RNA as genomic material. Proc. Natl Acad. Sci. USA 98 (2001) 8425-8432
    • (2001) Proc. Natl Acad. Sci. USA , vol.98 , pp. 8425-8432
    • Shibata, T.1    Nishinaka, T.2    Mikawa, T.3    Aihara, H.4    Kurumizaka, H.5    Yokoyama, S.6    Ito, Y.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.