A service-oriented grid infrastructure for biomedical data and compute services

IEEE Transactions on Nanobioscience

Volumn 6, Issue 2, 2007, Pages 136-141

  Arbona, Antonio ^a   Benkner, Siegfried ^b   Engelbrecht, Gerhard ^b   Fingberg, Jochen ^c   Hofmann, Martin ^d   Kumpf, Kai ^d   Lonsdale, Guy ^c   Woehrer, Alexander ^b  

^a GridSystems SA   (Spain)

^b UNIVERSITY OF VIENNA   (Austria)

^c NEC LABORATORIES EUROPE   (Germany)

^d FRAUNHOFER INSTITUTE FOR ALGORITHMS AND SCIENTIFIC COMPUTING SCAI   (Germany)

Author keywords

Data mediation; Grid computing; On demand supercomputing; Ontologies; Web services

Indexed keywords

COMPUTATIONAL METHODS; DISEASES; INFORMATION SERVICES; MANAGEMENT INFORMATION SYSTEMS; MEDICAL COMPUTING; MIDDLEWARE; ONTOLOGY; WEB SERVICES;

DATA MEDIATION; DATA REPOSITORIES; DATA SOURCES; ON DEMAND SUPERCOMPUTING;

GRID COMPUTING;

CLINICAL RESEARCH; COMPUTER ANALYSIS; COMPUTER ASSISTED DIAGNOSIS; COMPUTER INPUT DEVICE; COMPUTER INTERFACE; COMPUTER MODEL; COMPUTER PROGRAM; COMPUTER SIMULATION; INFORMATION SYSTEM; REFERENCE DATABASE; REVIEW; SEMANTICS;

COMPUTATIONAL BIOLOGY; DATABASE MANAGEMENT SYSTEMS; DATABASES, FACTUAL; INFORMATION STORAGE AND RETRIEVAL; INTERNET; MOLECULAR BIOLOGY; USER-COMPUTER INTERFACE;

EID: 34249990058     PISSN: 15361241     EISSN: None     Source Type: Journal    
DOI: 10.1109/TNB.2007.897438     Document Type: Review

References (33)

1. M. N. Alpdemir, A. Mukherjee, N. W. Paton, P. Watson, A. A. Fernandes, A. Gounaris, and J. Smith, "Service-based distributed querying on the grid," in Proc. 1st Int. Conf. Service Oriented Computing, 2003, pp. 467-482.
2. The @neurIST Project, Integrated biomedical informatics for the management of cerebral aneurysms EU Integrated Project IST-2004-027703 [Online]. Available: http://www.aneurist.org/
3. S. Benkner, G. Berti, G. Engelbrecht, J. Fingberg, G. Kohring, S. E. Middleton, and R. Schmidt, "GEMSS: Grid-infrastructure for medical service provision," Methods Inf. Med., vol. 44/4, 2005.
4. Biomedical Informatics Research Network [Online]. Available: http://www.nbirn.net
5. P. Brezany, I. Janciak, and A. M. Tjoa, "GridMiner: A fundamental infrastructure for building intelligent grid systems," in Proc. Int. Conf. Web Intelligence, 2005, pp. 150-156.
6. V. Breton et al., "The healthgrid white paper," Stud. Health Technol. Inform., vol. 112, pp. 249-321, 2005.
7. The BIOINFOMED Project [Online]. Available: http://bioinfomed.isciii.es/
8. S. Bowers, K. Lin, and B. Ludascher, "On integrating scientific resources through semantic registration," in Proc. 16th Int. Conf. Scientific and Statistical Database Management (SSDBM'04), 2004, pp. 349-352.
9. Cancer biomedical informatics grid [Online]. Available: http://cabig.cancer.gov
10. ENTREZ, Life sciences search engine [Online]. Available: http://www.ncbi.nlm.nih.gov/Entrez/
11. EBI Web Services [Online]. Available: http://www.ebi.ac.uk/Tools/ webservices/
12. Frauenhofer SCAI, Tool for universal annotations and mapping [Online]. Available: http://www.scai.fraunhofer.de/tuam0.html
13. I. Foster and R. L. Grossman, "Data integration in a bandwith-rich world," Commun. ACM, Nov 2003.
14. I. Foster et al., "The open grid services architecture, Version 1.5.," Open Grid Forum GFD-I.080, Jul. 2006 [Online]. Available: http://forge.gridforum.org/projects/ogsa-wg
15. The GEMSS Project: Grid-enabled medical simulation services EU IST Project, IST-2001-37153 [Online]. Available: http://www.gemss.de/
16. Globus Toolkit [Online]. Available: http://www.globus.org/toolkit/
17. C. Goble, C. Wroe, and R. Stevens, "The myGrid project: Services, architecture and demonstrator," in UK All Hands Meeting, 2003, pp. 595-603.
18. Health-e-Child Project [Online]. Available: http://www.health-e-child.org
19. IBM, Web service level agreement language specification [Online]. Available: http://www.research.ibm.com/wsla/WSLASpecV1-20030128.pdf 2003
20. InnerGrid, Architecture and services [Online]. Available: http://www.gridsystems.com/images/pdf/IGV_Architecture.pdf 2006
21. D. M. Jones, J. W. Fenner, G. Berti, F. Kruggel, R. A. Mehrem, W. Backfrieder, R. Moore, and A. Geltmeier, "The GEMSS grid: An evolving HPC environment for medical applications," presented at the HealthGrid 2004, Clermont-Ferrand, France.
22. E. Laure et al., Programming the Grid With gLite CERN, EGEE-TR-2006-001, 2006.
23. North Carolina BioGrid [Online]. Available: http://www.thebiogrid.org/
24. H. Matsuda, "A grid environment for data integration of scientific databases," presented at the 1st Int. Conf. eScience and Grid Computing, Melbourne, Australia, 2005.
25. Open Grid Services Architecture Data Access and Integration (OGSADAI) [Online]. Available: http://www.ogsadai.org
26. Open Middleware Infrastructure Institute [Online]. Available: http://www.omii.ac.uk/
27. S. Staab, A. Maedche, and S. Handschuh, "An annotation framework for the semantic Web," presented at the 1st Workshop Multimedia Annotation, Tokyo, Japan, 2001.
28. L. Sun and E. C. Ifeachor, "The impact of grid on healthcare," in Proc. 2nd Int. Conf. Computational Intelligence in Medicine and Healthcare (CIMED 2005), 2005, pp. 279-287.
29. Web Service Resource Framework [Online]. Available: http://www.globus. org/wsrf/
30. Web Services Security [Online]. Available: http://www.oasis-open.org/
31. H. Wache, T. Voegele, T. Visser, H. Stuckenschmidt, G. Schuster, H. Neumann, and S. Huebner, "Ontology-based integration of information - A survey of existing approaches," in Proc. IJCAI-01 Workshop: Ontologies and Information Sharing, H. Stuckenschmidt, Ed., 2001, pp. 108-117.
32. A. Woehrer, P. Brezany, and A. M. Tjoa, "Novel mediator architectures for grid information systems," Future Gener. Comput. Syst., vol. 21, no. 1, pp. 107-114, Jan 2005.
33. Web Services Interoperability [Online]. Available: http://www.ws-i.org