New insights into the binding mode of coenzymes: Structure of Thermus thermophilus Δ1-pyrroline-5-carboxylate dehydrogenase complexed with NADP+

Acta Crystallographica Section F: Structural Biology and Crystallization Communications

Volumn 63, Issue 6, 2007, Pages 462-465

  Inagaki, Eiji ^a   Ohshima, Noriyasu ^a   Sakamoto, Keiko ^a   Babayeva, Nigar D ^a,b   Kato, Hiroaki ^c   Yokoyama, Shigeyuki ^a,d,e   Tahirov, Tahir H ^a,b  

^a Harima Institute ^*  (Japan)

^b UNIVERSITY OF NEBRASKA MEDICAL CENTER   (United States)

^c KYOTO UNIVERSITY   (Japan)

^d UNIVERSITY OF TOKYO   (Japan)

^e RIKEN YOKOHAMA INSTITUTE   (Japan)

Author keywords

1 pyrroline 5 carboxylate dehydrogenase; Coenzyme binding mode; NAD(H); NADP(H); Proline metabolic pathway

Indexed keywords

BACTERIAL PROTEIN; GLUTAMATE DEHYDROGENASE (NADP); NICOTINAMIDE ADENINE DINUCLEOTIDE PHOSPHATE; PYRROLINE 5 CARBOXYLATE DEHYDROGENASE;

ARTICLE; BINDING SITE; CHEMISTRY; COENZYME; ENZYMOLOGY; METABOLISM; PHYSIOLOGY; THERMUS THERMOPHILUS; X RAY CRYSTALLOGRAPHY;

1-PYRROLINE-5-CARBOXYLATE DEHYDROGENASE; BACTERIAL PROTEINS; BINDING SITES; COENZYMES; CRYSTALLOGRAPHY, X-RAY; GLUTAMATE DEHYDROGENASE (NADP+); NADP; THERMUS THERMOPHILUS;

THERMUS THERMOPHILUS;

EID: 34249946589     PISSN: 17443091     EISSN: 17443091     Source Type: Journal    
DOI: 10.1107/S1744309107021422     Document Type: Article

References (16)

1. Collaborative Computational Project, Number 4 (1994). Acta Cryst. D50, 760-763.
2. Csonka, L. N. (1981). Mol. Gen. Genet. 182, 82-86.
3. DeLano, W. L. (2002). The PyMOL Molecular Graphics System. http:// www.pymol.org.
4. Delwing, D., Bavaresco, C. S., Chiarani, F., Wannmacher, C. M., Wajner, M., Dutra-Filho, C. S. & de Souza Wyse, A. T. (2003). Brain Res. 991, 180-186.
5. Emsley, P. & Cowtan, K. (2004). Acta Cryst. D60, 2126-2132.
6. Hu, C. A, Delauney, A. J. & Verma, D. P. (1992). Proc. Natl Acad. Sci. USA, 89, 9354-9358.
7. Inagaki, E., Ohshima, N., Takahashi, H., Kuroishi, C., Yokoyama, S. & Tahirov, T. H. (2006). J. Mol. Biol. 362, 490-501.
8. Inagaki, E., Takahashi, H., Kuroishi, C. & Tahirov, T. H. (2005). Acta Cryst. F61, 609-611.
9. Laskowski, R. A., MacArthur, M. W., Moss, D. S. & Thornton, J. M. (1993). J. Appl. Cryst. 26, 283-291.
10. Murshudov, G. N., Vagin, A. A. & Dodson, E. J. (1997). Acta Cryst. D53, 240-255.
11. Otwinowski, Z. (1993). Proceedings of the CCP4 Study Weekend. Data Collection and Processing, edited by L. Sawyer, N. Isaacs & S. Bailey, pp. 56-62. Warrington: Daresbury Laboratory.
12. Otwinowski, Z. & Minor, W. (1997). Methods Enzymol. 276, 307-326.
13. Phang, J. M., Hu, C. A. & Valle, D. (2001). The Metabolic and Molecular Bases of Inherited Disease, 8th ed., edited by C. R. Scriver, A. R. Beaudet, W. Sly & D. Valle, pp. 1821-1838. New York: McGraw-Hill.
14. Taylor, H. O. & Leslie, A. G. W. (1998). CCP4 Newsl. 35, 9.
15. Yeates, T. O. (1997). Methods Enzymol. 276, 344-358.
16. Yoon, K.-A., Nakamura, Y. & Arakawa, H. (2004). J. Hum. Genet. 49, 134-140.