-
1
-
-
0037340834
-
Real value prediction of solvent accessibility from amino acid sequence
-
Ahmad S, Gromiha MM, Sarai A. Real value prediction of solvent accessibility from amino acid sequence. Proteins 2003;50:629-635.
-
(2003)
Proteins
, vol.50
, pp. 629-635
-
-
Ahmad, S.1
Gromiha, M.M.2
Sarai, A.3
-
2
-
-
6344258643
-
Prediction of protein accessible surface areas by support vector regression
-
Yuan Z, Huang B. Prediction of protein accessible surface areas by support vector regression. Proteins 2004;57:558-564.
-
(2004)
Proteins
, vol.57
, pp. 558-564
-
-
Yuan, Z.1
Huang, B.2
-
3
-
-
4043052866
-
Accurate prediction of solvent accessibility using neural networks-based regression
-
Adamczak R, Porollo A, Meller J. Accurate prediction of solvent accessibility using neural networks-based regression. Proteins 2004;56:753-767.
-
(2004)
Proteins
, vol.56
, pp. 753-767
-
-
Adamczak, R.1
Porollo, A.2
Meller, J.3
-
4
-
-
26444473604
-
Real value prediction of solvent accessibility in proteins using multiple sequence alignment and secondary structure
-
Garg A, Kaur H, Raghava G. Real value prediction of solvent accessibility in proteins using multiple sequence alignment and secondary structure. Proteins 2005;61:318-324.
-
(2005)
Proteins
, vol.61
, pp. 318-324
-
-
Garg, A.1
Kaur, H.2
Raghava, G.3
-
5
-
-
27544475311
-
Prediction and evolutionary information analysis of protein solvent accessibility using multiple linear regression
-
Wang J, Lee H, Ahmad S. Prediction and evolutionary information analysis of protein solvent accessibility using multiple linear regression. Proteins 2005;61:481-491.
-
(2005)
Proteins
, vol.61
, pp. 481-491
-
-
Wang, J.1
Lee, H.2
Ahmad, S.3
-
6
-
-
33646864744
-
QBES: Predicting real values of solvent accessibility from sequences by efficient, constrained energy optimization
-
Xu Z, Zhang C, Liu S, Zhou Y. QBES: predicting real values of solvent accessibility from sequences by efficient, constrained energy optimization. Proteins 2006;63:961-966.
-
(2006)
Proteins
, vol.63
, pp. 961-966
-
-
Xu, Z.1
Zhang, C.2
Liu, S.3
Zhou, Y.4
-
7
-
-
17844373552
-
Protein secondary structure prediction with dihedral angles
-
Wood MJ, Hirst JD. Protein secondary structure prediction with dihedral angles. Proteins 2005;59:476-481.
-
(2005)
Proteins
, vol.59
, pp. 476-481
-
-
Wood, M.J.1
Hirst, J.D.2
-
8
-
-
0043180474
-
PISCES: A protein sequence culling server
-
Wang G, Dunbrack RLJ. PISCES: a protein sequence culling server. Bioinformatics 2003;19:1589-1591.
-
(2003)
Bioinformatics
, vol.19
, pp. 1589-1591
-
-
Wang, G.1
Dunbrack, R.L.J.2
-
9
-
-
0020997912
-
Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features
-
Kabsch W, Sander C. Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features. Biopolymers 1983;22:2577-2637.
-
(1983)
Biopolymers
, vol.22
, pp. 2577-2637
-
-
Kabsch, W.1
Sander, C.2
-
10
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acid Res 1997;25:3389-3402.
-
(1997)
Nucleic Acid Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schäffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
11
-
-
0033578684
-
Protein secondary structure prediction based on position-specific scoring matrices
-
Jones DT. Protein secondary structure prediction based on position-specific scoring matrices. J Mol Biol 1999;292:195-202.
-
(1999)
J Mol Biol
, vol.292
, pp. 195-202
-
-
Jones, D.T.1
-
12
-
-
0035789525
-
Generation and evaluation of dimension reduced amino acid parameter representations by artificial neural networks
-
Meiler J, Muller M, Zeidler A, Schmaschke F. Generation and evaluation of dimension reduced amino acid parameter representations by artificial neural networks. J Mol Model 2001;7:360-369.
-
(2001)
J Mol Model
, vol.7
, pp. 360-369
-
-
Meiler, J.1
Muller, M.2
Zeidler, A.3
Schmaschke, F.4
-
13
-
-
33847073796
-
Achieving 80% accuracy for secondary-structure prediction by large-scale neural-network training
-
Dor O, Zhou Y. Achieving 80% accuracy for secondary-structure prediction by large-scale neural-network training. Proteins 2007;66:838-845.
-
(2007)
Proteins
, vol.66
, pp. 838-845
-
-
Dor, O.1
Zhou, Y.2
-
14
-
-
1042268067
-
Prediction of protein relative solvent accessibility with support vector machines and long-range interaction 3D local descriptor
-
Kim H, Park H. Prediction of protein relative solvent accessibility with support vector machines and long-range interaction 3D local descriptor. Proteins 2004;54:557-562.
-
(2004)
Proteins
, vol.54
, pp. 557-562
-
-
Kim, H.1
Park, H.2
-
15
-
-
14644440766
-
Prediction of protein relative solvent accessibility with a two-stage svm approach
-
Nguyen M, Rajapakse J. Prediction of protein relative solvent accessibility with a two-stage svm approach. Proteins 2005;59:30-37.
-
(2005)
Proteins
, vol.59
, pp. 30-37
-
-
Nguyen, M.1
Rajapakse, J.2
-
16
-
-
33646036734
-
Two-stage support vector regression approach for predicting accessible surface areas of amino acids
-
Nguyen M, Rajapakse J. Two-stage support vector regression approach for predicting accessible surface areas of amino acids. Proteins 2006;63:542-550.
-
(2006)
Proteins
, vol.63
, pp. 542-550
-
-
Nguyen, M.1
Rajapakse, J.2
-
17
-
-
33745616114
-
A machine learning information retrieval approach to protein fold recognition
-
in press
-
Cheng J, Baldi P. A machine learning information retrieval approach to protein fold recognition. Bioinformatics 2006; in press.
-
(2006)
Bioinformatics
-
-
Cheng, J.1
Baldi, P.2
-
18
-
-
0029186289
-
TOPITS: Threading one-dimensional predictions into three-dimensional structures
-
AAAI Press Menlo Park, CA USA. pp
-
Rost B. TOPITS: threading one-dimensional predictions into three-dimensional structures. Third international conference on intelligent systems for molecular biology 1995; AAAI Press Menlo Park, CA USA. pp. 314-321.
-
(1995)
Third international conference on intelligent systems for molecular biology
, pp. 314-321
-
-
Rost, B.1
-
19
-
-
0031577260
-
Protein fold recognition by prediction-based threading
-
Rost B, Sander C. Protein fold recognition by prediction-based threading. J Mol Biol 1997;270:471-480.
-
(1997)
J Mol Biol
, vol.270
, pp. 471-480
-
-
Rost, B.1
Sander, C.2
-
20
-
-
3442901082
-
Improving fold recognition without folds
-
Przybylski D, Rost B. Improving fold recognition without folds. J Mol Biol 2004;341:255-269.
-
(2004)
J Mol Biol
, vol.341
, pp. 255-269
-
-
Przybylski, D.1
Rost, B.2
-
21
-
-
33644837197
-
SSALN: An alignment algorithm using structure-dependent substitution matrices and gap penalties learned from structurally aligned protein pairs
-
Qiu J, Elber R. SSALN: an alignment algorithm using structure-dependent substitution matrices and gap penalties learned from structurally aligned protein pairs. Proteins 2006;62:881-891.
-
(2006)
Proteins
, vol.62
, pp. 881-891
-
-
Qiu, J.1
Elber, R.2
|