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Volumn 68, Issue 1, 2007, Pages 34-38

A simple way to compute protein dynamics without a mechanical model

Author keywords

Molecular dynamics; Normal mode analysis; Protein dynamics; Thermal fluctuations

Indexed keywords

PROTEIN;

EID: 34249881654     PISSN: 08873585     EISSN: 10970134     Source Type: Journal    
DOI: 10.1002/prot.21430     Document Type: Article
Times cited : (12)

References (11)
  • 1
    • 0016610491 scopus 로고
    • Computer simulation of protein folding
    • Levitt M, Warshel A. Computer simulation of protein folding. Nature 1975;253:694-698.
    • (1975) Nature , vol.253 , pp. 694-698
    • Levitt, M.1    Warshel, A.2
  • 2
    • 0017251977 scopus 로고
    • Bicycle-pedal model for the first step in the vision process
    • Warshel A. Bicycle-pedal model for the first step in the vision process. Nature 1976;260:679-683.
    • (1976) Nature , vol.260 , pp. 679-683
    • Warshel, A.1
  • 4
    • 0000197372 scopus 로고    scopus 로고
    • Large amplitude elastic motions in proteins from a single-parameter, atomic analysis
    • Tirion MM. Large amplitude elastic motions in proteins from a single-parameter, atomic analysis. Phys Rev Lett 1996;77:1905-1908.
    • (1996) Phys Rev Lett , vol.77 , pp. 1905-1908
    • Tirion, M.M.1
  • 5
    • 0030623823 scopus 로고    scopus 로고
    • Direct evaluation of thermal fluctuations in proteins using a single-parameter harmonic potential
    • Bahar I, Atilgan AR, Erman B. Direct evaluation of thermal fluctuations in proteins using a single-parameter harmonic potential. Fold Des 1997;2:173-181.
    • (1997) Fold Des , vol.2 , pp. 173-181
    • Bahar, I.1    Atilgan, A.R.2    Erman, B.3
  • 6
    • 0037173062 scopus 로고    scopus 로고
    • How to describe protein motion without amino acid sequence and atomic coordinates
    • Ming D, Kong Y, Lambert MA, Huang Z, Ma J. How to describe protein motion without amino acid sequence and atomic coordinates. Proc Natl Acad Sci USA 2002;99:8620-8625.
    • (2002) Proc Natl Acad Sci USA , vol.99 , pp. 8620-8625
    • Ming, D.1    Kong, Y.2    Lambert, M.A.3    Huang, Z.4    Ma, J.5
  • 7
    • 0000991642 scopus 로고
    • Harmonic dynamics of proteins: Normal modes and fluctuations in bovine pancreatic trypsin inhibitor
    • Brooks B, Karplus M. Harmonic dynamics of proteins: normal modes and fluctuations in bovine pancreatic trypsin inhibitor. Proc Natl Acad Sci USA 1983;80:6571-6575.
    • (1983) Proc Natl Acad Sci USA , vol.80 , pp. 6571-6575
    • Brooks, B.1    Karplus, M.2
  • 8
    • 0022419152 scopus 로고
    • Protein normal-mode dynamics: Trypsin inhibitor, crambin, ribonuclease and lysozyme
    • Levitt M, Sander C, Stern PS. Protein normal-mode dynamics: trypsin inhibitor, crambin, ribonuclease and lysozyme. J Mol Biol 1985;181:423-447.
    • (1985) J Mol Biol , vol.181 , pp. 423-447
    • Levitt, M.1    Sander, C.2    Stern, P.S.3
  • 9
    • 0026663419 scopus 로고
    • Normal mode refinement: Crystallographic refinement of protein dynamic structure. I. Theory and test by simulated diffraction data
    • Kidera A, Go N. Normal mode refinement: crystallographic refinement of protein dynamic structure. I. Theory and test by simulated diffraction data. J Mol Biol 1992;225:457-475.
    • (1992) J Mol Biol , vol.225 , pp. 457-475
    • Kidera, A.1    Go, N.2
  • 10
    • 0000728542 scopus 로고
    • Microscopic and semimicroscopic calculations of electrostatic energies in proteins by the Polaris and Enzymix programs
    • Lee FS, Chu ZT, Warshel A. Microscopic and semimicroscopic calculations of electrostatic energies in proteins by the Polaris and Enzymix programs. J Comput Chem 1993;14:161-185.
    • (1993) J Comput Chem , vol.14 , pp. 161-185
    • Lee, F.S.1    Chu, Z.T.2    Warshel, A.3
  • 11
    • 0021104775 scopus 로고
    • Molecular dynamics of native protein. I. Computer simulation of trajectories
    • Levitt M. Molecular dynamics of native protein. I. Computer simulation of trajectories. J Mol Biol 1983;168:595-617.
    • (1983) J Mol Biol , vol.168 , pp. 595-617
    • Levitt, M.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.