Promoter analysis of iron-deficiency-inducible barley IDS3 gene in Arabidopsis and tobacco plants

Plant Physiology and Biochemistry

Volumn 45, Issue 5, 2007, Pages 262-269

  Kobayashi, Takanori ^a,b,c   Yoshihara, Toshihiro ^b   Itai, Reiko Nakanishi ^a,c   Nakanishi, Hiromi ^a   Takahashi, Michiko ^a   Mori, Satoshi ^a   Nishizawa, Naoko K ^a,c  

^a UNIVERSITY OF TOKYO   (Japan)

^b CENTRAL RESEARCH INSTITUTE OF ELECTRIC POWER INDUSTRY   (Japan)

^c JAPAN SCIENCE AND TECHNOLOGY AGENCY   (Japan)

Author keywords

cis acting elements; IDE; IDS3; Inducible gene expression; Iron deficiency; Promoter analysis; Root specific expression

Indexed keywords

IDS3 PROTEIN, HORDEUM VULGARE; IRON; MIXED FUNCTION OXIDASE; UNCLASSIFIED DRUG; VEGETABLE PROTEIN;

ARABIDOPSIS; ARTICLE; BARLEY; GENE DELETION; GENE EXPRESSION REGULATION; GENETICS; METABOLISM; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PLANT DISEASE; PLANT ROOT; PROMOTER REGION; TOBACCO; TRANSGENIC PLANT; UPREGULATION;

ARABIDOPSIS; BASE SEQUENCE; GENE DELETION; GENE EXPRESSION REGULATION, PLANT; HORDEUM; IRON; MIXED FUNCTION OXYGENASES; MOLECULAR SEQUENCE DATA; PLANT DISEASES; PLANT PROTEINS; PLANT ROOTS; PLANTS, GENETICALLY MODIFIED; PROMOTER REGIONS (GENETICS); TOBACCO; UP-REGULATION;

ARABIDOPSIS; ARABIDOPSIS THALIANA; HORDEUM; HORDEUM VULGARE SUBSP. VULGARE; NICOTIANA OBTUSIFOLIA; NICOTIANA TABACUM; VALERIANA EDULIS;

EID: 34249871107     PISSN: 09819428     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.plaphy.2007.03.007     Document Type: Article

References (34)

1. Bent A.F., Kunkel B.N., Dahlbeck D., Brown K.L., Schmidt R., Giraudat J., Leung J., and Staskawicz B.J. RPS2 of Arabidopsis thaliana: a leucine-rich repeat class of plant disease resistance genes. Science 265 (1994) 1856-1860
2. Colangelo E.P., and Guerinot M.L. The essential basic helix-loop-helix protein FIT1 is required for the iron deficiency response. Plant Cell 16 (2004) 3400-3412
3. Connolly E.L., Fett J.P., and Guerinot M.L. Expression of the IRT1 metal transporter is controlled by metals at the levels of transcript and protein accumulation. Plant Cell 14 (2002) 1347-1357
4. Connolly E.L., Campbell N.H., Grotz N., Prichard C.L., and Guerinot M.L. Overexpression of the FRO2 ferric chelate reductase confers tolerance to growth on low iron and uncovers posttranscriptional control. Plant Physiol 133 (2003) 1102-1110
5. Curie C., Panaviene Z., Loulergue C., Dellaporta S.L., Briat J.F., and Walker E.L. Maize yellow stripe 1 encodes a membrane protein directly involved in Fe(III) uptake. Nature 409 (2001) 346-349
6. Eide D., Broderius M., Fett J., and Guerinot M.L. A novel iron-regulated metal transporter from plants identified by functional expression in yeast. Proc. Natl. Acad. Sci. U.S.A. 93 (1996) 5624-5628
7. Hell R., and Stephan U.W. Iron uptake, trafficking and homeostasis in plants. Planta 216 (2003) 541-551
8. Helmer G., Casadaban M., Bevan M., Kayes L., and Chilton M.D. A new chimeric gene as a marker for plant transformation: the expression of Escherichia coli beta-galactosidase in sunflower and tobacco cells. Bio/Technology 2 (1984) 520-527
9. Higuchi K., Suzuki K., Nakanishi H., Yamaguchi H., Nishizawa N.K., and Mori S. Cloning of nicotianamine synthase genes, novel genes involved in the biosynthesis of phytosiderophores. Plant Physiol 119 (1999) 471-479
10. Higuchi K., Watanabe S., Takahashi M., Kawasaki S., Nakanishi H., Nishizawa N.K., and Mori S. Nicotianamine synthase gene expression differs in barley and rice under Fe-deficient conditions. Plant J 25 (2001) 159-167
11. Ito S., Inoue H., Kobayashi T., Yoshiba M., Mori S., Nishizawa N.K., and Higuchi K. Interspecies compatibility of the NAS1 gene promoters, Plant Physiol. Biochem 45 (2007) 270-276
12. Jakoby M., Wang H.Y., Reidt W., Weisshaar B., and Bauer P. FRU (BHLH029) is required for induction of iron mobilization genes in Arabidopsis thaliana. FEBS Lett. 577 (2004) 528-534
13. Kobayashi T., Nakanishi H., Takahashi M., Kawasaki S., Nishizawa N.K., and Mori S. In vivo evidence that Ids3 from Hordeum vulgare encodes a dioxygenase that converts 2′-deoxymugineic acid to mugineic acid in transgenic rice. Planta 212 (2001) 864-871
14. Kobayashi T., Nakayama Y., Itai R.N., Nakanishi H., Yoshihara T., Mori S., and Nishizawa N.K. Identification of novel cis-acting elements, IDE1 and IDE2, of the barley IDS2 gene promoter conferring iron-deficiency-inducible, root-specific expression in heterogeneous tobacco plants. Plant J 36 (2003) 780-793
15. Kobayashi T., Nakayama Y., Takahashi M., Inoue H., Nakanishi H., Yoshihara T., Mori S., and Nishizawa N.K. Construction of artificial promoters highly responsive to iron deficiency. Soil Sci. Plant Nutr 50 (2004) 1167-1175
16. Kobayashi T., Suzuki M., Inoue H., Itai R.N., Takahashi M., Nakanishi H., Mori S., and Nishizawa N.K. Expression of iron-acquisition-related genes in iron-deficient rice is co-ordinately induced by partially conserved iron-deficiency-responsive elements. J. Exp. Bot 56 (2005) 1305-1316
17. Koike S., Inoue H., Mizuno D., Takahashi M., Nakanishi H., Mori S., and Nishizawa N.K. OsYSL2 is a rice metal-nicotianamine transporter that is regulated by iron and expressed in the phloem. Plant J 39 (2004) 415-424
18. Ling H.Q., Bauer P., Bereczky Z., Keller B., and Ganal M. The tomato fer gene encoding a bHLH protein controls iron-uptake responses in roots. Proc. Natl. Acad. Sci. U.S.A. 99 (2002) 13938-13943
19. Ma J.F., Taketa S., Chang Y.C., Iwashita T., Matsumoto H., Takeda K., and Nomoto K. Genes controlling hydroxylations of phytosiderophores are located on different chromosomes in barley (Hordeum vulgare L.). Planta 207 (1999) 590-596
20. Mori S. Iron acquisition by plants. Curr. Opin. Plant Biol. 2 (1999) 250-253
21. Murata Y., Ma J.F., Yamaji N., Ueno D., Nomoto K., and Iwashita T. A specific transporter for iron(III)-phytosiderophore in barley roots. Plant J 46 (2006) 563-572
22. Nakanishi H., Okumura N., Umehara Y., Nishizawa N.K., Chino M., and Mori S. Expression of a gene specific for iron deficiency (Ids3) in the roots of Hordeum vulgare. Plant Cell Physiol 34 (1993) 401-410
23. Nakanishi H., Yamaguchi H., Sasakuma T., Nishizawa N.K., and Mori S. Two dioxygenase genes, Ids3 and Ids2, from Hordeum vulgare are involved in the biosynthesis of mugineic acid family phytosiderophores. Plant Mol. Biol. 44 (2000) 199-207
24. Negishi T., Nakanishi H., Yazaki J., Kishimoto N., Fujii F., Shimbo K., Yamamoto K., Sakata K., Sasaki T., Kikuchi S., Mori S., and Nishizawa N.K. cDNA microarray analysis of gene expression during Fe-deficiency stress in barley suggests that polar transport of vesicles is implicated in phytosiderophore secretion in Fe-deficient barley roots. Plant J 30 (2002) 83-94
25. Ogo Y., Itai R.N., Nakanishi H., Inoue H., Kobayashi T., Suzuki M., Takahashi M., Mori S., and Nishizawa N.K. Isolation and characterization of IRO2, a novel iron-regulated bHLH transcription factor in graminaceous plants. J. Exp. Bot 57 (2006) 2867-2878
26. Okumura N., Nishizawa N.K., Umehara Y., Ohata T., Nakanishi H., Yamaguchi H., Chino M., and Mori S. A dioxygenase gene (Ids2) expressed under iron deficiency conditions in the roots of Hordeum vulgare. Plant Mol. Biol. 25 (1994) 705-719
27. Robinson N.J., Procter C.M., Connolly E.L., and Guerinot M.L. A ferric-chelate reductase for iron uptake from soils. Nature 397 (1999) 694-697
28. Römheld V., and Marschner H. Evidence for a specific uptake system for iron phytosiderophore in roots of grasses. Plant Physiol 80 (1986) 175-180
29. Takagi S. Naturally occurring iron-chelating compounds in oat- and rice-root washing. I. Activity measurement and preliminary characterization. Soil Sci. Plant Nutr 22 (1976) 423-433
30. Takahashi M., Yamaguchi H., Nakanishi H., Shioiri T., Nishizawa N.K., and Mori S. Cloning two genes for nicotianamine aminotransferase, a critical enzyme in iron acquisition (Strategy II) in graminaceous plants. Plant Physiol 121 (1999) 947-956
31. Toledo-Ortiz G., Huq E., and Quail P.H. The Arabidopsis basic/helix-loop-helix transcription factor family. Plant Cell 15 (2003) 1749-1770
32. Vert G., Briat J.F., and Curie C. Dual regulation of the Arabidopsis high-affinity root iron uptake system by local and long-distance signals. Plant Physiol 132 (2003) 796-804
33. Yoshihara T., Kobayashi T., Goto F., Masuda T., Higuchi K., Nakanishi H., Nishizawa N.K., and Mori S. Regulation of the iron-deficiency responsive gene, Ids2, of barley in tobacco. Plant Biotechnol 20 (2003) 33-41
34. Yuan Y.X., Zhang J., Wang D.W., and Ling H.Q. AtbHLH29 of Arabidopsis thaliana is a functional ortholog of tomato FER involved in controlling iron acquisition in strategy I plants. Cell Res. 15 (2005) 613-621