Usage of reaction kinetics data stored in databases - A modeler's point of view

In Silico Biology

Volumn 7, Issue SUPPL. 2, 2007, Pages 65-71

  Kummer, Ursula ^a  

^a UNIVERSITY OF HEIDELBERG   (Germany)

Author keywords

Database use; Enzyme kinetics; Modeling; Simulation

Indexed keywords

BIOINFORMATICS; CHEMICAL REACTION KINETICS; COMPUTER MODEL; CONFERENCE PAPER; DATA BASE; ENZYME ACTIVITY; ENZYME KINETICS; INFORMATION PROCESSING; INFORMATION RETRIEVAL; MATHEMATICAL ANALYSIS;

COMPUTER SIMULATION; DATABASES, FACTUAL; ENZYMES; KINETICS; MODELS, BIOLOGICAL; SOFTWARE;

EID: 34249864409     PISSN: 13866338     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Conference Paper

References (5)

1. Kummer, U. and Sahle, S. (2007) Problems of Currently Published Enzyme Kinetic Data for Usage in Modeling and Simulation. In: Experimental Standard Conditions of Enzyme Characterizations, Hicks, M.G. and Kettner, C. (eds.), Beilstein Institute, Frankfurt, in press.
2. Gillespie, D. T. (1976). A general method for numerically simulating the stochastic time evolution of coupled chemical reactions. J. Comp. Phys. 22, 403-434.
3. Hoops, S., Sahle, S., Gauges, R., Lee, C., Pahle, J., Simus, N., Singhal, M., Xu, L., Mendes, P. and Kummer, U. (2006). COPASI - a COmplex PAthway SImulator. Bioinformatics 22, 3067-3074.
4. Pritchard, L. and Kell, D. B. (2002). Schemes of flux control in a model of Saccharomyces cerevisiae glycolysis. Eur. J. Biochem. 269 3894-3904.
5. Wittig, U., Golebiewski, M., Kania, R., Krebs, O., Mir, S., Weidemann, A., Anstein, S., Saric, J. and Rojas, I. (2006) SABIO-RK: Integration and curation of reaction kinetics data. Lecture Notes in Bioinformatics 4075, 94-103.