메뉴 건너뛰기




Volumn 8, Issue SUPPL. 2, 2007, Pages

Learning causal networks from systems biology time course data: An effective model selection procedure for the vector autoregressive process

Author keywords

[No Author keywords available]

Indexed keywords

ARABIDOPSIS THALIANA; AUTO REGRESSIVE PROCESS; HIGH DIMENSIONALITY; MODEL SELECTION PROCEDURES; PARTIAL CORRELATION; REGRESSION COEFFICIENT; REGULATORY INTERACTIONS; STATISTICAL LEARNING;

EID: 34249862287     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-8-S2-S3     Document Type: Article
Times cited : (122)

References (21)
  • 1
    • 0000997472 scopus 로고
    • Macroeconomics and Reality
    • 10.2307/1912017
    • Sims CA Macroeconomics and Reality Econometrica 1980, 48(1):48 10.2307/ 1912017
    • (1980) Econometrica , vol.48 , Issue.1 , pp. 1-48
    • Sims, C.A.1
  • 2
    • 8444245968 scopus 로고    scopus 로고
    • Temporal Aggregation Bias and Inference of Causal Regulatory Networks
    • 10.1089/cmb.2004.11.971 15700412
    • Bay SD Chrisman L Pohorille A Shrager J Temporal Aggregation Bias and Inference of Causal Regulatory Networks J Comput Biol 2004, 11:971-985 10.1089/cmb.2004.11.971 15700412
    • (2004) J Comput Biol , vol.11 , pp. 971-985
    • Bay, S.D.1    Chrisman, L.2    Pohorille, A.3    Shrager, J.4
  • 4
    • 12344330368 scopus 로고    scopus 로고
    • Bayesian estimates for vector autoregressive models
    • 10.1198/073500104000000622
    • Ni S Sun D Bayesian estimates for vector autoregressive models J Business Economic Statist 2005, 23:105-117 10.1198/073500104000000622
    • (2005) J Business Economic Statist , vol.23 , pp. 105-117
    • Ni, S.1    Sun, D.2
  • 5
    • 84949161149 scopus 로고
    • Stein's estimation rule and its competitors-an empirical Bayes approach
    • 10.2307/2284155
    • Efron B Morris CN Stein's estimation rule and its competitors-an empirical Bayes approach J Amer Statist Assoc 1973, 68:117-130 10.2307/ 2284155
    • (1973) J Amer Statist Assoc , vol.68 , pp. 117-130
    • Efron, B.1    Morris, C.N.2
  • 6
    • 33847302479 scopus 로고    scopus 로고
    • Accurate ranking of differentially expressed genes by a distribution-free shrinkage approach
    • Opgen-Rhein R Strimmer K Accurate ranking of differentially expressed genes by a distribution-free shrinkage approach Stat Appl Genet Mol Biol 2007, 6:9
    • (2007) Stat Appl Genet Mol Biol , vol.6 , pp. 9
    • Opgen-Rhein, R.1    Strimmer, K.2
  • 7
    • 27844521293 scopus 로고    scopus 로고
    • A shrinkage approach to large-scale covariance matrix estimation and implications for functional genomics
    • Schäfer J Strimmer K A shrinkage approach to large-scale covariance matrix estimation and implications for functional genomics Stat Appl Genet Mol Biol 2005, 4:32
    • (2005) Stat Appl Genet Mol Biol , vol.4 , pp. 32
    • Schäfer, J.1    Strimmer, K.2
  • 8
    • 0011046885 scopus 로고
    • Testing for causality, a personal viewpoint
    • 10.1016/0165-1889(80)90069-X
    • Granger CWJ Testing for causality, a personal viewpoint J Econom Dyn Control 1980 2 329 352 10.1016/0165-1889(80)90069-X
    • (1980) J Econom Dyn Control , vol.2 , pp. 329-352
    • Granger, C.W.J.1
  • 9
    • 15944364151 scopus 로고    scopus 로고
    • An empirical Bayes approach to inferring large-scale gene association networks
    • 10.1093/bioinformatics/bti062 15479708
    • Schäfer J Strimmer K An empirical Bayes approach to inferring large-scale gene association networks Bioinformatics 2005, 21:754-764 10.1093/bioinformatics/bti062 15479708
    • (2005) Bioinformatics , vol.21 , pp. 754-764
    • Schäfer, J.1    Strimmer, K.2
  • 11
    • 27844581857 scopus 로고    scopus 로고
    • Local false discovery rates
    • Department of Statistics, Stanford University
    • Efron B Local false discovery rates Tech rep Department of Statistics, Stanford University 2005
    • (2005) Tech Rep
    • Efron, B.1
  • 12
    • 0347568442 scopus 로고    scopus 로고
    • Searching for the causal structure of a vector autoregression
    • 10.1046/j.0305-9049.2003.00087.x
    • Demiralp S Hoover KD Searching for the causal structure of a vector autoregression Oxford Bull Econom Statist 2003, 65:745-767 10.1046/ j.0305-9049.2003.00087.x
    • (2003) Oxford Bull Econom Statist , vol.65 , pp. 745-767
    • Demiralp, S.1    Hoover, K.D.2
  • 13
    • 15744379588 scopus 로고    scopus 로고
    • Graphical models for structural vector autoregressions
    • Sant' Anna School of Advanced Studies, Pisa
    • Moneta A Graphical models for structural vector autoregressions Technical Report Laboratory of Economics and Management, Sant' Anna School of Advanced Studies, Pisa 2004
    • (2004) Technical Report Laboratory of Economics and Management
    • Moneta, A.1
  • 14
    • 0001287271 scopus 로고    scopus 로고
    • Regression shrinkage and selection via the lasso
    • Tibshirani R Regression shrinkage and selection via the lasso J R Statist Soc B 1996, 58:267-288
    • (1996) J R Statist Soc B , vol.58 , pp. 267-288
    • Tibshirani, R.1
  • 15
    • 33747163541 scopus 로고    scopus 로고
    • High-dimensional graphs and variable selection with the Lasso
    • 10.1214/009053606000000281
    • Meinshausen N Bühlmann P High-dimensional graphs and variable selection with the Lasso Ann Statist 2006, 34:1436-1462 10.1214/ 009053606000000281
    • (2006) Ann Statist , vol.34 , pp. 1436-1462
    • Meinshausen, N.1    Bühlmann, P.2
  • 16
    • 32044449925 scopus 로고
    • Generalized cross-validation as a method for choosing a good ridge parameter
    • 10.2307/1268518
    • Golub G Heath M Wahba G Generalized cross-validation as a method for choosing a good ridge parameter Technometrics 1979, 21:215-223 10.2307/ 1268518
    • (1979) Technometrics , vol.21 , pp. 215-223
    • Golub, G.1    Heath, M.2    Wahba, G.3
  • 17
    • 14744275289 scopus 로고    scopus 로고
    • Diurnal changes in the transcriptom encoding enzymes of starch metabolism provide evidence for both transcriptionaland posttranscriptional regulation of starch metabolism inArabidopsis leaves
    • 523333 15347792 10.1104/pp.104.044347
    • Smith SM Fulton DC Chia T Thorneycroft D Chapple A Dunstan H Hylton C Smith SCZAM Diurnal changes in the transcriptom encoding enzymes of starch metabolism provide evidence for both transcriptionaland posttranscriptional regulation of starch metabolism inArabidopsis leaves Plant Physiol 2004, 136:2687-2699 523333 15347792 10.1104/pp.104.044347
    • (2004) Plant Physiol , vol.136 , pp. 2687-2699
    • Smith, S.M.1    Fulton, D.C.2    Chia, T.3    Thorneycroft, D.4    Chapple, A.5    Dunstan, H.6    Hylton, C.7    Smith, S.C.Z.A.M.8
  • 19
    • 0347093600 scopus 로고    scopus 로고
    • Identifying periodically expressed transcripts in microarray time series data
    • 10.1093/bioinformatics/btg364 14693803
    • Wichert S Fokianos K Strimmer K Identifying periodically expressed transcripts in microarray time series data Bioinformatics 2004, 20:5-20 10.1093/bioinformatics/btg364 14693803
    • (2004) Bioinformatics , vol.20 , pp. 5-20
    • Wichert, S.1    Fokianos, K.2    Strimmer, K.3
  • 20
    • 34548786620 scopus 로고    scopus 로고
    • Inferring gene dependency networks from genomic longitudinal data: A functional data approach
    • Opgen-Rhein R Strimmer K Inferring gene dependency networks from genomic longitudinal data: A functional data approach REVSTAT 2006, 4:53-65
    • (2006) REVSTAT , vol.4 , pp. 53-65
    • Opgen-Rhein, R.1    Strimmer, K.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.