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Volumn 168, Issue 5, 2007, Pages 709-717

Different fates of two mitochondrial gene spacers in early land plant evolution

Author keywords

Bryophytes; Mitochondrial DNA; Phylogeny; Spacer

Indexed keywords

CLADISTICS; EVOLUTIONARY BIOLOGY; GENE; GENETIC ANALYSIS; GENOMICS; LIVERWORT; MITOCHONDRIAL DNA; MOSS;

EID: 34249816157     PISSN: 10585893     EISSN: None     Source Type: Journal    
DOI: 10.1086/513472     Document Type: Article
Times cited : (16)

References (43)
  • 1
    • 0037162534 scopus 로고    scopus 로고
    • Punctuated evolution of mitochondrial gene content: High and variable rates of mitochondrial gene loss and transfer to the nucleus during angio-sperm evolution
    • Adams KL, YL Qiu, M Stoutemyer, JD Palmer 2002 Punctuated evolution of mitochondrial gene content: high and variable rates of mitochondrial gene loss and transfer to the nucleus during angio-sperm evolution. Proc Natl Acad Sci USA 99:9905-9912.
    • (2002) Proc Natl Acad Sci USA , vol.99 , pp. 9905-9912
    • Adams, K.L.1    Qiu, Y.L.2    Stoutemyer, M.3    Palmer, J.D.4
  • 2
    • 0033760831 scopus 로고    scopus 로고
    • Mitochondrial and chloroplast DNA-based phylogeny of Pelargonium (Geraniaceae)
    • Bakker FT, A Culham, CE Pankhurst, M Gibby 2000 Mitochondrial and chloroplast DNA-based phylogeny of Pelargonium (Geraniaceae). Am J Bot 87:727-734.
    • (2000) Am J Bot , vol.87 , pp. 727-734
    • Bakker, F.T.1    Culham, A.2    Pankhurst, C.E.3    Gibby, M.4
  • 3
    • 0035150954 scopus 로고    scopus 로고
    • The mitochondrial nad2 gene as a novel marker locus for phylogenetic analysis of early land plants: A comparative analysis in mosses
    • Beckert S, H Muhle, D Pruchner, V Knoop 2001 The mitochondrial nad2 gene as a novel marker locus for phylogenetic analysis of early land plants: a comparative analysis in mosses. Mol Phylogenet Evol 18:117-126.
    • (2001) Mol Phylogenet Evol , vol.18 , pp. 117-126
    • Beckert, S.1    Muhle, H.2    Pruchner, D.3    Knoop, V.4
  • 4
    • 0033428415 scopus 로고    scopus 로고
    • A molecular phylogeny of bryophytes based on nucleotide sequences of the mitochondrial nad5 gene
    • Beckert S, S Steinhauser, H Muhle, V Knoop 1999 A molecular phylogeny of bryophytes based on nucleotide sequences of the mitochondrial nad5 gene. Plant Syst Evol 218:179-192.
    • (1999) Plant Syst Evol , vol.218 , pp. 179-192
    • Beckert, S.1    Steinhauser, S.2    Muhle, H.3    Knoop, V.4
  • 5
    • 0034636023 scopus 로고    scopus 로고
    • Bowe LM, G Coat, CW dePamphilis 2000 Phylogeny of seed plants based on all three genomic compartments: extant gymnosperms are monophyletic and Gnetales' closest relatives are conifers. Proc Natl Acad Sci USA 97:4092-4097.
    • Bowe LM, G Coat, CW dePamphilis 2000 Phylogeny of seed plants based on all three genomic compartments: extant gymnosperms are monophyletic and Gnetales' closest relatives are conifers. Proc Natl Acad Sci USA 97:4092-4097.
  • 7
    • 20044382035 scopus 로고    scopus 로고
    • Evolutionary trends in the simple thalloid liverworts (Marchantiophyta, Jungermanniopsida subclass Metzgeriidae)
    • Crandall-Stotler B, LL Forrest, RE Stotler 2005 Evolutionary trends in the simple thalloid liverworts (Marchantiophyta, Jungermanniopsida subclass Metzgeriidae). Taxon 54:299-316.
    • (2005) Taxon , vol.54 , pp. 299-316
    • Crandall-Stotler, B.1    Forrest, L.L.2    Stotler, R.E.3
  • 8
    • 0002385504 scopus 로고    scopus 로고
    • Morphology and classification of the Marchantiophyta
    • AJ Shaw, B Goffinet, eds, biology. Cambridge University Press, Cambridge
    • Crandall-Stotler B, RE Stotler 2000 Morphology and classification of the Marchantiophyta. Pages 21-70 in AJ Shaw, B Goffinet, eds. Bryophyte biology. Cambridge University Press, Cambridge.
    • (2000) Bryophyte , pp. 21-70
    • Crandall-Stotler, B.1    Stotler, R.E.2
  • 9
    • 27644441993 scopus 로고    scopus 로고
    • A molecular phylogeny of leafy liverworts (Jungermanniidae: Marchantiophyta)
    • B Goffinet, V Hollowell, R Magill, eds, Missouri Botanical Garden Press, St. Louis
    • Davis EC 2004 A molecular phylogeny of leafy liverworts (Jungermanniidae: Marchantiophyta). Pages 61-86 in B Goffinet, V Hollowell, R Magill, eds. Molecular systematics of bryophytes. Missouri Botanical Garden Press, St. Louis.
    • (2004) Molecular systematics of bryophytes , pp. 61-86
    • Davis, E.C.1
  • 10
    • 3042698703 scopus 로고    scopus 로고
    • Distribution of introns in the mitochondrial gene nad1 in land plants: Phylogenetic and molecular evolutionary implications
    • Dombrovska E, YL Qiu 2004 Distribution of introns in the mitochondrial gene nad1 in land plants: phylogenetic and molecular evolutionary implications. Mol Phylogenet Evol 32:246-263.
    • (2004) Mol Phylogenet Evol , vol.32 , pp. 246-263
    • Dombrovska, E.1    Qiu, Y.L.2
  • 11
    • 0033301420 scopus 로고    scopus 로고
    • Phylogenetic relationships of land plants using mitochondrial small-subunit rDNA sequences
    • Duff RJ, DL Nickrent 1999 Phylogenetic relationships of land plants using mitochondrial small-subunit rDNA sequences. Am J Bot 86:372-386.
    • (1999) Am J Bot , vol.86 , pp. 372-386
    • Duff, R.J.1    Nickrent, D.L.2
  • 12
    • 13844255463 scopus 로고    scopus 로고
    • Progress towards a robust phylogeny for the liverworts, with particular focus on the simple thalloids
    • Forrest LL, BJ Crandall-Stotler 2005 Progress towards a robust phylogeny for the liverworts, with particular focus on the simple thalloids. J Hattori Bot Lab 97:127-159.
    • (2005) J Hattori Bot Lab , vol.97 , pp. 127-159
    • Forrest, L.L.1    Crandall-Stotler, B.J.2
  • 13
    • 22344453351 scopus 로고    scopus 로고
    • Systematics of the bryophyta (mosses): From molecules to a revised classification
    • B Goffinet, V Hollowell, R Magill, eds, Missouri Botanical Garden Press, St. Louis
    • Goffinet B, WR Buck 2004 Systematics of the bryophyta (mosses): from molecules to a revised classification. Pages 205-239 in B Goffinet, V Hollowell, R Magill, eds. Molecular systematics of bryophytes. Missouri Botanical Garden Press, St. Louis.
    • (2004) Molecular systematics of bryophytes , pp. 205-239
    • Goffinet, B.1    Buck, W.R.2
  • 14
    • 10344257212 scopus 로고    scopus 로고
    • Ancestors of trans-splicing mitochondrial introns support serial sister group relationships of hornworts and mosses to vascular plants
    • Groth-Malonek M, D Pruchner, F Grewe, V Knoop 2005 Ancestors of trans-splicing mitochondrial introns support serial sister group relationships of hornworts and mosses to vascular plants. Mol Biol Evol 22:117-125.
    • (2005) Mol Biol Evol , vol.22 , pp. 117-125
    • Groth-Malonek, M.1    Pruchner, D.2    Grewe, F.3    Knoop, V.4
  • 15
    • 18244369792 scopus 로고    scopus 로고
    • Towards a natural classification of liverworts (Marchantiophyta) based on the chloroplast gene rbcL
    • Heinrichs J, SR Gradstein, R Wilson, H Schneider 2005 Towards a natural classification of liverworts (Marchantiophyta) based on the chloroplast gene rbcL. Cryptogam Bryol 26:215-233.
    • (2005) Cryptogam Bryol , vol.26 , pp. 215-233
    • Heinrichs, J.1    Gradstein, S.R.2    Wilson, R.3    Schneider, H.4
  • 16
    • 33644953310 scopus 로고    scopus 로고
    • Illuminating the evolutionary history of liverworts (Marchantiophyta): Towards a natural classification
    • He-Nygrén X, A Juslén, I Ahonen, D Glenny, S Piippo 2006 Illuminating the evolutionary history of liverworts (Marchantiophyta): towards a natural classification. Cladistics 22:1-31.
    • (2006) Cladistics , vol.22 , pp. 1-31
    • He-Nygrén, X.1    Juslén, A.2    Ahonen, I.3    Glenny, D.4    Piippo, S.5
  • 17
    • 4744343662 scopus 로고    scopus 로고
    • The mitochondrial DNA of land plants: Peculiarities in phylogenetic perspective
    • Knoop V 2004 The mitochondrial DNA of land plants: peculiarities in phylogenetic perspective. Curr Genet 46:123-139.
    • (2004) Curr Genet , vol.46 , pp. 123-139
    • Knoop, V.1
  • 18
    • 21244454832 scopus 로고    scopus 로고
    • Molecular phylogeny of bryophytes and peculiarities of their chloroplast and mitochondrial DNAs
    • AJ Wood, MJ Oliver, DJ Cove, eds, Kluwer, Dordrecht
    • Knoop V, YL Qiu, K Yoshinaga 2004 Molecular phylogeny of bryophytes and peculiarities of their chloroplast and mitochondrial DNAs. Pages 1-16 in AJ Wood, MJ Oliver, DJ Cove, eds. New frontiers in bryology: physiology, molecular biology and functional genomics. Kluwer, Dordrecht.
    • (2004) New frontiers in bryology: Physiology, molecular biology and functional genomics , pp. 1-16
    • Knoop, V.1    Qiu, Y.L.2    Yoshinaga, K.3
  • 19
    • 3242810318 scopus 로고    scopus 로고
    • MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment
    • Kumar S, K Tamura, M Nei 2004 MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5:150-163.
    • (2004) Brief Bioinform , vol.5 , pp. 150-163
    • Kumar, S.1    Tamura, K.2    Nei, M.3
  • 20
    • 0031027524 scopus 로고    scopus 로고
    • Evolution of trans-splicing plant mitochondrial introns in pre-Permian times
    • Malek O, A Brennicke, V Knoop 1997 Evolution of trans-splicing plant mitochondrial introns in pre-Permian times. Proc Natl Acad Sci USA 94:553-558.
    • (1997) Proc Natl Acad Sci USA , vol.94 , pp. 553-558
    • Malek, O.1    Brennicke, A.2    Knoop, V.3
  • 21
    • 0031789680 scopus 로고    scopus 로고
    • Trans-splicing group II introns in plant mitochondria: The complete set of cis-arranged homologs in ferns, fern allies, and a hornwort
    • Malek O, V Knoop 1998 Trans-splicing group II introns in plant mitochondria: the complete set of cis-arranged homologs in ferns, fern allies, and a hornwort. RNA 4:1599-1609.
    • (1998) RNA , vol.4 , pp. 1599-1609
    • Malek, O.1    Knoop, V.2
  • 22
    • 0029863292 scopus 로고    scopus 로고
    • RNA editing in bryophytes and a molecular phylogeny of land plants
    • Malek O, K Lättig, R Hiesel, A Brennicke, V Knoop 1996 RNA editing in bryophytes and a molecular phylogeny of land plants. EMBO J 15:1403-1411.
    • (1996) EMBO J , vol.15 , pp. 1403-1411
    • Malek, O.1    Lättig, K.2    Hiesel, R.3    Brennicke, A.4    Knoop, V.5
  • 23
    • 0028985405 scopus 로고
    • The rps3-rpl16-nad3-rps12 gene cluster in rice mitochondrial DNA is transcribed from alternative promoters
    • Nakazono M, H Itadani, T Wakasugi, N Tsutsumi, M Sugiura, A Hirai 1995 The rps3-rpl16-nad3-rps12 gene cluster in rice mitochondrial DNA is transcribed from alternative promoters. Curr Genet 27:184-189.
    • (1995) Curr Genet , vol.27 , pp. 184-189
    • Nakazono, M.1    Itadani, H.2    Wakasugi, T.3    Tsutsumi, N.4    Sugiura, M.5    Hirai, A.6
  • 25
    • 0027461931 scopus 로고    scopus 로고
    • Nozato N, K Oda, K Yamato, E Ohta, M Takemura, K Akashi, H Fukuzawa, K Ohyama 1993 Cotranscriptional expression of mitochondrial genes for subunits of NADH dehydrogenase, nad5, nad4, nad2, in Marchantia polymorpha. Mol Gen Genet 237:343-350.
    • Nozato N, K Oda, K Yamato, E Ohta, M Takemura, K Akashi, H Fukuzawa, K Ohyama 1993 Cotranscriptional expression of mitochondrial genes for subunits of NADH dehydrogenase, nad5, nad4, nad2, in Marchantia polymorpha. Mol Gen Genet 237:343-350.
  • 26
    • 0026558482 scopus 로고
    • Gene organization deduced from the complete sequence of liverwort Marchantia polymorpha mitochondrial DNA: A primitive form of plant mitochondrial genome
    • Oda K, K Yamato, E Ohta, Y Nakamura, M Takemura, N Nozato, K Akashi, et al 1992 Gene organization deduced from the complete sequence of liverwort Marchantia polymorpha mitochondrial DNA: a primitive form of plant mitochondrial genome. J Mol Biol 223:1-7.
    • (1992) J Mol Biol , vol.223 , pp. 1-7
    • Oda, K.1    Yamato, K.2    Ohta, E.3    Nakamura, Y.4    Takemura, M.5    Nozato, N.6    Akashi, K.7
  • 27
    • 0029861780 scopus 로고    scopus 로고
    • Evolution of the nad3-rps12 gene cluster in angiosperm mitochondria: Comparison of edited and unedited sequences
    • Pesole G, LR Ceci, C Gissi, C Saccone, C Quagliariello 1996 Evolution of the nad3-rps12 gene cluster in angiosperm mitochondria: comparison of edited and unedited sequences. J Mol Evol 43:447-452.
    • (1996) J Mol Evol , vol.43 , pp. 447-452
    • Pesole, G.1    Ceci, L.R.2    Gissi, C.3    Saccone, C.4    Quagliariello, C.5
  • 28
    • 0037008837 scopus 로고    scopus 로고
    • Divergent intron conservation in the mitochondrial nad2 gene: Signatures for the three bryophyte classes (mosses, liverworts, and hornworts) and the lycophyres
    • Pruchner D, S Beckert, H Muhle, V Knoop 2002 Divergent intron conservation in the mitochondrial nad2 gene: signatures for the three bryophyte classes (mosses, liverworts, and hornworts) and the lycophyres. J Mol Evol 55:265-271.
    • (2002) J Mol Evol , vol.55 , pp. 265-271
    • Pruchner, D.1    Beckert, S.2    Muhle, H.3    Knoop, V.4
  • 29
    • 0035207114 scopus 로고    scopus 로고
    • Mosses share mitochondrial group II introns with flowering plants, not with liverworts
    • Pruchner D, B Nassal, M Schindler, V Knoop 2001 Mosses share mitochondrial group II introns with flowering plants, not with liverworts. Mol Genet Genom 266:608-613.
    • (2001) Mol Genet Genom , vol.266 , pp. 608-613
    • Pruchner, D.1    Nassal, B.2    Schindler, M.3    Knoop, V.4
  • 30
    • 0032514486 scopus 로고    scopus 로고
    • The gain of three mitochondrial introns identifies liverworts as the earliest land plants
    • Qiu YL, YR Cho, JC Cox, JD Palmer 1998 The gain of three mitochondrial introns identifies liverworts as the earliest land plants. Nature 394:671-674.
    • (1998) Nature , vol.394 , pp. 671-674
    • Qiu, Y.L.1    Cho, Y.R.2    Cox, J.C.3    Palmer, J.D.4
  • 32
    • 3042725361 scopus 로고    scopus 로고
    • Many independent origins of trans splicing of a plant mitochondrial group II intron
    • Qiu YL, JD Palmer 2004 Many independent origins of trans splicing of a plant mitochondrial group II intron. J Mol Evol 59:80-89.
    • (2004) J Mol Evol , vol.59 , pp. 80-89
    • Qiu, Y.L.1    Palmer, J.D.2
  • 34
    • 0041386108 scopus 로고    scopus 로고
    • MiBayes 3: Bayesian phylogenetic inference under mixed models
    • Ronquist F, JP Huelsenbeck 2003 MiBayes 3: Bayesian phylogenetic inference under mixed models. Bioinfbrmatics 19:1572-1574.
    • (2003) Bioinfbrmatics , vol.19 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 36
    • 0027423401 scopus 로고
    • Ribosomal protein gene rpl5 is cotranscribed with the nad3 gene in Oenothera mitochondria
    • Schuster W 1993 Ribosomal protein gene rpl5 is cotranscribed with the nad3 gene in Oenothera mitochondria. Mol Gen Genet 240:445-449.
    • (1993) Mol Gen Genet , vol.240 , pp. 445-449
    • Schuster, W.1
  • 37
    • 3042736365 scopus 로고    scopus 로고
    • The rpl5-rps14 mitochondrial region: A hot spot for DNA rearrangements in Solatnum spp. somatic hybrids
    • Scotti N, L Maréchal-Drouard, T Cardi 2004 The rpl5-rps14 mitochondrial region: a hot spot for DNA rearrangements in Solatnum spp. somatic hybrids. Curr Genet 45:378-382.
    • (2004) Curr Genet , vol.45 , pp. 378-382
    • Scotti, N.1    Maréchal-Drouard, L.2    Cardi, T.3
  • 38
    • 0242487487 scopus 로고    scopus 로고
    • Phylogenetic evidence of a rapid radiation of pleurocarpous mosses (Bryophyta)
    • Shaw AJ, CJ Cox, B Goffinet, WR Buck, SB Boles 2003 Phylogenetic evidence of a rapid radiation of pleurocarpous mosses (Bryophyta). Evolution 57:2226-2241.
    • (2003) Evolution , vol.57 , pp. 2226-2241
    • Shaw, A.J.1    Cox, C.J.2    Goffinet, B.3    Buck, W.R.4    Boles, S.B.5
  • 39
    • 0037143760 scopus 로고    scopus 로고
    • The chloroplast and mitochondrial genome sequences of the charophyte Chaetosphaeridium globosum: Insights into the timing of the events that restructured organelle DNAs within the green algal lineage that led to land plants
    • Turmel M, C Otis, C Lemieux 2002 The chloroplast and mitochondrial genome sequences of the charophyte Chaetosphaeridium globosum: insights into the timing of the events that restructured organelle DNAs within the green algal lineage that led to land plants. Proc Natl Acad Sci USA 99:11275-11280.
    • (2002) Proc Natl Acad Sci USA , vol.99 , pp. 11275-11280
    • Turmel, M.1    Otis, C.2    Lemieux, C.3
  • 40
    • 0042922459 scopus 로고    scopus 로고
    • The mitochondrial genome of Chara vulgaris: Insights into the mitochondrial DNA architecture of the last common ancestor of green algae and land plants
    • _ 2003 The mitochondrial genome of Chara vulgaris: insights into the mitochondrial DNA architecture of the last common ancestor of green algae and land plants. Plant Cell 15:1888-1903.
    • (2003) Plant Cell , vol.15 , pp. 1888-1903
    • Turmel, M.1    Otis, C.2    Lemieux, C.3
  • 41
    • 0031053832 scopus 로고    scopus 로고
    • Mitochondrial DNA variations and nuclear RFLPs reflect different genetic similarities among 23 Arabidopsis thaliana ecotypes
    • Ullrich H, K Lättig, A Brennicke, V Knoop 1997 Mitochondrial DNA variations and nuclear RFLPs reflect different genetic similarities among 23 Arabidopsis thaliana ecotypes. Plant Mol Biol 33:37-45.
    • (1997) Plant Mol Biol , vol.33 , pp. 37-45
    • Ullrich, H.1    Lättig, K.2    Brennicke, A.3    Knoop, V.4
  • 42
  • 43
    • 0032921389 scopus 로고    scopus 로고
    • Phylogenetic information in the mitochondrial nad5 gene of pteridophytes: RNA editing and intron sequences
    • Vangerow S, T Teerkorn, V Knoop 1999 Phylogenetic information in the mitochondrial nad5 gene of pteridophytes: RNA editing and intron sequences. Plant Biol 1:235-243.
    • (1999) Plant Biol , vol.1 , pp. 235-243
    • Vangerow, S.1    Teerkorn, T.2    Knoop, V.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.