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Volumn 189, Issue 11, 2007, Pages 3945-3953

Functional genomics enables identification of genes of the arginine transaminase pathway in Pseudomonas aeruginosa

Author keywords

[No Author keywords available]

Indexed keywords

2 KETOARGININE DECARBOXYLASE; ALANINE DEHYDROGENASE; AMINOTRANSFERASE; ARGININE; ARGININE AMINOTRANSFERASE; CARBOXYLYASE; DIHYDROLIPOAMIDE SUCCINYLTRANSFERASE; PYRUVATE TRANSAMINASE; UNCLASSIFIED DRUG;

EID: 34249793996     PISSN: 00219193     EISSN: None     Source Type: Journal    
DOI: 10.1128/JB.00261-07     Document Type: Article
Times cited : (45)

References (40)
  • 1
    • 0017184389 scopus 로고
    • A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding
    • Bradford, M. M. 1976. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal. Biochem. 72:248-254.
    • (1976) Anal. Biochem , vol.72 , pp. 248-254
    • Bradford, M.M.1
  • 2
    • 0015523293 scopus 로고
    • Metabolism of basic amino acids in Pseudomonas putida. γ-Guanidinobutyrate amidinohydrolase
    • Chou, C. S., and V. W. Rodwell. 1972. Metabolism of basic amino acids in Pseudomonas putida. γ-Guanidinobutyrate amidinohydrolase. J. Biol. Chem. 247:4486-4490.
    • (1972) J. Biol. Chem , vol.247 , pp. 4486-4490
    • Chou, C.S.1    Rodwell, V.W.2
  • 3
    • 0025370615 scopus 로고
    • Construction of broad-host-range plasmid vectors for easy visible selection and analysis of promoters
    • Farinha, M. A., and A. M. Kropinski. 1990. Construction of broad-host-range plasmid vectors for easy visible selection and analysis of promoters. J. Bacteriol. 172:3496-3499.
    • (1990) J. Bacteriol , vol.172 , pp. 3496-3499
    • Farinha, M.A.1    Kropinski, A.M.2
  • 4
    • 0022550466 scopus 로고
    • The cloning and sequence analysis of the aspC and tyrB genes from Escherichia coli K12. Comparison of the primary structures of the aspartate aminotransferase and aromatic aminotransferase of E. coli with those of the pig aspartate aminotransferase isoenzymes
    • Fotheringham, I. G., S. A. Dacey, P. P. Taylor, T. J. Smith, M. G. Hunter, M. E. Finlay, S. B. Primrose, D. M. Parker, and R. M. Edwards. 1986. The cloning and sequence analysis of the aspC and tyrB genes from Escherichia coli K12. Comparison of the primary structures of the aspartate aminotransferase and aromatic aminotransferase of E. coli with those of the pig aspartate aminotransferase isoenzymes. Biochem. J. 234:593-604.
    • (1986) Biochem. J , vol.234 , pp. 593-604
    • Fotheringham, I.G.1    Dacey, S.A.2    Taylor, P.P.3    Smith, T.J.4    Hunter, M.G.5    Finlay, M.E.6    Primrose, S.B.7    Parker, D.M.8    Edwards, R.M.9
  • 7
    • 0025755803 scopus 로고
    • Cloning and characterization of the Pseudomonas aeruginosa lasR gene, a transcriptional activator of elastase expression
    • Gambello, M. J., and B. H. Iglewski. 1991. Cloning and characterization of the Pseudomonas aeruginosa lasR gene, a transcriptional activator of elastase expression. J. Bacteriol. 173:3000-3009.
    • (1991) J. Bacteriol , vol.173 , pp. 3000-3009
    • Gambello, M.J.1    Iglewski, B.H.2
  • 8
    • 0025812353 scopus 로고
    • Anaerobic regulation of transcription initiation in the arcDABC operon of Pseudomonas aeruginosa
    • Gamper, M., A. Zimmermann, and D. Haas. 1991. Anaerobic regulation of transcription initiation in the arcDABC operon of Pseudomonas aeruginosa. J. Bacteriol. 173:4742-4750.
    • (1991) J. Bacteriol , vol.173 , pp. 4742-4750
    • Gamper, M.1    Zimmermann, A.2    Haas, D.3
  • 9
    • 0002736243 scopus 로고
    • Arginine network of Pseudomonas aeruginosa: Specific and global control
    • S. Silver, A. M. Chakrabarty, B. Iglewski, and S. Kaplan ed, American Society for Microbiology, Washington, DC
    • Haas, D., M. Galimand, M. Gamper, and A. Zimmermann. 1990. Arginine network of Pseudomonas aeruginosa: specific and global control, p. 303-316. In S. Silver, A. M. Chakrabarty, B. Iglewski, and S. Kaplan (ed.), Pseudomonas: biotransformation, pathogenesis, and evolving biotechnology. American Society for Microbiology, Washington, DC.
    • (1990) Pseudomonas: Biotransformation, pathogenesis, and evolving biotechnology , pp. 303-316
    • Haas, D.1    Galimand, M.2    Gamper, M.3    Zimmermann, A.4
  • 10
    • 0017744884 scopus 로고
    • The genetic organization of arginine biosynthesis in Pseudomonas aeruginosa
    • Haas, D., B. W. Holloway, A. Schambock, and T. Leisinger. 1977. The genetic organization of arginine biosynthesis in Pseudomonas aeruginosa. Mol. Gen. Genet. 154:7-22.
    • (1977) Mol. Gen. Genet , vol.154 , pp. 7-22
    • Haas, D.1    Holloway, B.W.2    Schambock, A.3    Leisinger, T.4
  • 11
    • 0021327499 scopus 로고
    • Arginine degradation in Pseudomonas aeruginosa mutants blocked in two arginine catabolic pathways
    • Haas, D., H. Matsumoto, P. Moretti, V. Stalon, and A. Mercenier. 1984. Arginine degradation in Pseudomonas aeruginosa mutants blocked in two arginine catabolic pathways. Mol. Gen. Genet. 193:437-444.
    • (1984) Mol. Gen. Genet , vol.193 , pp. 437-444
    • Haas, D.1    Matsumoto, H.2    Moretti, P.3    Stalon, V.4    Mercenier, A.5
  • 12
    • 2942548962 scopus 로고    scopus 로고
    • The arginine regulatory protein mediates repression by arginine of the operons encoding glutamate synthase and anabolic glutamate dehydrogenase in Pseudomonas aeruginosa
    • Hashim, S., D. H. Kwon, A. Abdelal, and C.-D. Lu. 2004. The arginine regulatory protein mediates repression by arginine of the operons encoding glutamate synthase and anabolic glutamate dehydrogenase in Pseudomonas aeruginosa. J. Bacteriol. 186:3848-3854.
    • (2004) J. Bacteriol , vol.186 , pp. 3848-3854
    • Hashim, S.1    Kwon, D.H.2    Abdelal, A.3    Lu, C.-D.4
  • 13
    • 0028007233 scopus 로고
    • Genomic mapping of Pseudomonas aeruginosa PAO
    • Holloway, B. W., U. Romling, and B. Tummler. 1994. Genomic mapping of Pseudomonas aeruginosa PAO. Microbiology 140(Pt. 11):2907-2929.
    • (1994) Microbiology , vol.140 , Issue.PART. 11 , pp. 2907-2929
    • Holloway, B.W.1    Romling, U.2    Tummler, B.3
  • 14
    • 0030690922 scopus 로고    scopus 로고
    • Cloning and characterization of the aru genes encoding enzymes of the catabolic arginine succinyltransferase pathway in Pseudomonas aeruginosa
    • Itoh, Y. 1997. Cloning and characterization of the aru genes encoding enzymes of the catabolic arginine succinyltransferase pathway in Pseudomonas aeruginosa. J. Bacteriol. 179:7280-7290.
    • (1997) J. Bacteriol , vol.179 , pp. 7280-7290
    • Itoh, Y.1
  • 15
    • 33644748770 scopus 로고    scopus 로고
    • Arginine and polyamine metabolism
    • J. L. Ramos ed, Kluwer Academic/Plenum Publisher, New York, NY
    • Itoh, Y., and Y. Nakada. 2004. Arginine and polyamine metabolism, p. 243-272. In J. L. Ramos (ed.), Pseudomonas: biosynthesis of macromolecules and molecular metabolism. Kluwer Academic/Plenum Publisher, New York, NY.
    • (2004) Pseudomonas: Biosynthesis of macromolecules and molecular metabolism , pp. 243-272
    • Itoh, Y.1    Nakada, Y.2
  • 16
    • 0023988783 scopus 로고
    • The fourth arginine catabolic pathway of Pseudomonas aeruginosa
    • Jann, A., H. Matsumoto, and D. Haas. 1988. The fourth arginine catabolic pathway of Pseudomonas aeruginosa. J. Gen. Microbiol. 134(Pt. 4):1043-1053.
    • (1988) J. Gen. Microbiol , vol.134 , Issue.PART. 4 , pp. 1043-1053
    • Jann, A.1    Matsumoto, H.2    Haas, D.3
  • 17
    • 0035156804 scopus 로고    scopus 로고
    • +-dependent glutamate dehydrogenase which is subject to allosteric regulation
    • +-dependent glutamate dehydrogenase which is subject to allosteric regulation. J. Bacteriol. 183:490-499.
    • (2001) J. Bacteriol , vol.183 , pp. 490-499
    • Lu, C.-D.1    Abdelal, A.T.2
  • 18
    • 0032992369 scopus 로고    scopus 로고
    • Role of ArgR in activation of the ast operon, encoding enzymes of the arginine succinyltransferase pathway in Salmonella typhimurium
    • Lu, C.-D., and A. T. Abdelal. 1999. Role of ArgR in activation of the ast operon, encoding enzymes of the arginine succinyltransferase pathway in Salmonella typhimurium. J. Bacteriol. 181:1934-1938.
    • (1999) J. Bacteriol , vol.181 , pp. 1934-1938
    • Lu, C.-D.1    Abdelal, A.T.2
  • 19
    • 0036299634 scopus 로고    scopus 로고
    • Functional analysis and regulation of the divergent spuABCDEFGH-spuI operons for polyamine uptake and utilization in Pseudomonas aeruginosa PAO1
    • Lu, C.-D., Y. Itoh, Y. Nakada, and Y. Jiang. 2002. Functional analysis and regulation of the divergent spuABCDEFGH-spuI operons for polyamine uptake and utilization in Pseudomonas aeruginosa PAO1. J. Bacteriol. 184:3765-3773.
    • (2002) J. Bacteriol , vol.184 , pp. 3765-3773
    • Lu, C.-D.1    Itoh, Y.2    Nakada, Y.3    Jiang, Y.4
  • 20
    • 2942574361 scopus 로고    scopus 로고
    • Transcriptome analysis of the ArgR regulon in Pseudomonas aeruginosa
    • Lu, C.-D., Z. Yang, and W. Li. 2004. Transcriptome analysis of the ArgR regulon in Pseudomonas aeruginosa. J. Bacteriol. 186:3855-3861.
    • (2004) J. Bacteriol , vol.186 , pp. 3855-3861
    • Lu, C.-D.1    Yang, Z.2    Li, W.3
  • 21
  • 22
    • 0015217762 scopus 로고
    • Metabolism of basic amino acids in Pseudomonas putida. Catabolism of lysine by cyclic and acyclic intermediates
    • Miller, D. L., and V. W. Rodwell. 1971. Metabolism of basic amino acids in Pseudomonas putida. Catabolism of lysine by cyclic and acyclic intermediates. J. Biol. Chem. 246:2758-2764.
    • (1971) J. Biol. Chem , vol.246 , pp. 2758-2764
    • Miller, D.L.1    Rodwell, V.W.2
  • 23
    • 0015239929 scopus 로고
    • Metabolism of basic amino acids in Pseudomonas putida. Intermediates in L-arginine catabolism
    • Miller, D. L., and V. W. Rodwell. 1971. Metabolism of basic amino acids in Pseudomonas putida. Intermediates in L-arginine catabolism. J. Biol. Chem. 246:5053-5058.
    • (1971) J. Biol. Chem , vol.246 , pp. 5053-5058
    • Miller, D.L.1    Rodwell, V.W.2
  • 25
    • 0036271428 scopus 로고    scopus 로고
    • Characterization and regulation of the gbuA gene, encoding guanidinobutyrase in the arginine dehydrogenase pathway of Pseudomonas aeruginosa PAO1
    • Nakada, Y., and Y. Itoh. 2002. Characterization and regulation of the gbuA gene, encoding guanidinobutyrase in the arginine dehydrogenase pathway of Pseudomonas aeruginosa PAO1. J. Bacteriol. 184:3377-3384.
    • (2002) J. Bacteriol , vol.184 , pp. 3377-3384
    • Nakada, Y.1    Itoh, Y.2
  • 26
    • 0037351889 scopus 로고    scopus 로고
    • Identification of the putrescine biosynthetic genes in Pseudomonas aeruginosa and characterization of agmatine deiminase and N-carbamoylputrescine amidohydrolase of the arginine decarboxylase pathway
    • Nakada, Y., and Y. Itoh. 2003. Identification of the putrescine biosynthetic genes in Pseudomonas aeruginosa and characterization of agmatine deiminase and N-carbamoylputrescine amidohydrolase of the arginine decarboxylase pathway. Microbiology 149:707-714.
    • (2003) Microbiology , vol.149 , pp. 707-714
    • Nakada, Y.1    Itoh, Y.2
  • 27
    • 0034750704 scopus 로고    scopus 로고
    • Molecular characterization and regulation of the aguBA operon, responsible for agmatine utilization in Pseudomonas aeruginosa PAO1
    • Nakada, Y., Y. Jiang, T. Nishijyo, Y. Itoh, and C.-D. Lu. 2001. Molecular characterization and regulation of the aguBA operon, responsible for agmatine utilization in Pseudomonas aeruginosa PAO1. J. Bacteriol. 183:6517-6524.
    • (2001) J. Bacteriol , vol.183 , pp. 6517-6524
    • Nakada, Y.1    Jiang, Y.2    Nishijyo, T.3    Itoh, Y.4    Lu, C.-D.5
  • 28
    • 0031795473 scopus 로고    scopus 로고
    • Molecular characterization and regulation of an operon encoding a system for transport of arginine and ornithine and the ArgR regulatory protein in Pseudomonas aeruginosa
    • Nishijyo, T., S. M. Park, C.-D. Lu, Y. Itoh, and A. T. Abdelal. 1998. Molecular characterization and regulation of an operon encoding a system for transport of arginine and ornithine and the ArgR regulatory protein in Pseudomonas aeruginosa. J. Bacteriol. 180:5559-5566.
    • (1998) J. Bacteriol , vol.180 , pp. 5559-5566
    • Nishijyo, T.1    Park, S.M.2    Lu, C.-D.3    Itoh, Y.4    Abdelal, A.T.5
  • 29
    • 0030987624 scopus 로고    scopus 로고
    • Cloning and characterization of argR, a gene that participates in regulation of arginine biosynthesis and catabolism in Pseudomonas aeruginosa PAO1
    • Park, S. M., C.-D. Lu, and A. T. Abdelal. 1997. Cloning and characterization of argR, a gene that participates in regulation of arginine biosynthesis and catabolism in Pseudomonas aeruginosa PAO1. J. Bacteriol. 179:5300-5308.
    • (1997) J. Bacteriol , vol.179 , pp. 5300-5308
    • Park, S.M.1    Lu, C.-D.2    Abdelal, A.T.3
  • 30
    • 0030924133 scopus 로고    scopus 로고
    • Purification and characterization of an arginine regulatory protein, ArgR, from Pseudomonas aeruginosa and its interactions with the control regions for the car, argF, and aru operons
    • Park, S. M., C.-D. Lu, and A. T. Abdelal. 1997. Purification and characterization of an arginine regulatory protein, ArgR, from Pseudomonas aeruginosa and its interactions with the control regions for the car, argF, and aru operons. J. Bacteriol. 179:5309-5317.
    • (1997) J. Bacteriol , vol.179 , pp. 5309-5317
    • Park, S.M.1    Lu, C.-D.2    Abdelal, A.T.3
  • 33
    • 0026011339 scopus 로고
    • Escherichia-Pseudomonas shuttle vectors derived from pUC18/19
    • Schweizer, H. P. 1991. Escherichia-Pseudomonas shuttle vectors derived from pUC18/19. Gene 97:109-121.
    • (1991) Gene , vol.97 , pp. 109-121
    • Schweizer, H.P.1
  • 34
    • 0022869287 scopus 로고
    • The construction of a cloning vector designed for gene replacement in Bordetella pertussis
    • Stibitz, S., W. Black, and S. Falkow. 1986. The construction of a cloning vector designed for gene replacement in Bordetella pertussis. Gene 50:133-140.
    • (1986) Gene , vol.50 , pp. 133-140
    • Stibitz, S.1    Black, W.2    Falkow, S.3
  • 35
    • 0034739007 scopus 로고    scopus 로고
    • Stover, C. K., X. Q. Pham, A. L. Erwin, S. D. Mizoguchi, P. Warrener, M. J. Hickey, F. S. Brinkman, W. O. Hufnagle, D. J. Kowalik, M. Lagrou, R. L. Garber, L. Goltry, E. Tolentino, S. Westbrock-Wadman, Y. Yuan, L. L. Brody, S. N. Coulter, K. R. Folger, A. Kas, K. Larbig, R. Lim, K. Smith, D. Spencer, G. K. Wong, Z. Wu, I. T. Paulsen, J. Reizer, M. H. Saier, R. E. Hancock, S. Lory, and M. V. Olson. 2000. Complete genome sequence of Pseudomonas aeruginosa PAO1, an opportunistic pathogen. Nature 406:959-964.
    • Stover, C. K., X. Q. Pham, A. L. Erwin, S. D. Mizoguchi, P. Warrener, M. J. Hickey, F. S. Brinkman, W. O. Hufnagle, D. J. Kowalik, M. Lagrou, R. L. Garber, L. Goltry, E. Tolentino, S. Westbrock-Wadman, Y. Yuan, L. L. Brody, S. N. Coulter, K. R. Folger, A. Kas, K. Larbig, R. Lim, K. Smith, D. Spencer, G. K. Wong, Z. Wu, I. T. Paulsen, J. Reizer, M. H. Saier, R. E. Hancock, S. Lory, and M. V. Olson. 2000. Complete genome sequence of Pseudomonas aeruginosa PAO1, an opportunistic pathogen. Nature 406:959-964.
  • 36
    • 0035916392 scopus 로고    scopus 로고
    • Purification and characterization of aminopropionaldehyde dehydrogenase from Arthrobacter sp. TMP-1
    • Tanaka, K., E. Matsuno, E. Shimizu, H. Shibai, and T. Yorifuji. 2001. Purification and characterization of aminopropionaldehyde dehydrogenase from Arthrobacter sp. TMP-1. FEMS Microbiol. Lett. 195:191-196.
    • (2001) FEMS Microbiol. Lett , vol.195 , pp. 191-196
    • Tanaka, K.1    Matsuno, E.2    Shimizu, E.3    Shibai, H.4    Yorifuji, T.5
  • 37
    • 0026331472 scopus 로고
    • Isolation and characterization of Pseudomonas putida mutants affected in arginine, ornithine and citrulline catabolism: Function of the arginine oxidase and arginine succinyltransferase pathways
    • Tricot, C., V. Stalon, and C. Legrain. 1991. Isolation and characterization of Pseudomonas putida mutants affected in arginine, ornithine and citrulline catabolism: function of the arginine oxidase and arginine succinyltransferase pathways. J. Gen. Microbiol. 137(Pt. 12):2911-2918.
    • (1991) J. Gen. Microbiol , vol.137 , Issue.PART. 12 , pp. 2911-2918
    • Tricot, C.1    Stalon, V.2    Legrain, C.3
  • 38
    • 0016803186 scopus 로고
    • Intermediates and enzymes between α-ketoarginine and γ- guanidinobutyrate in the L-arginine catabolic pathway of Pseudomonas putida
    • Vanderbilt, A. S., N. S. Gaby, and V. W. Rodwell. 1975. Intermediates and enzymes between α-ketoarginine and γ- guanidinobutyrate in the L-arginine catabolic pathway of Pseudomonas putida. J. Biol. Chem. 250:5322-5329.
    • (1975) J. Biol. Chem , vol.250 , pp. 5322-5329
    • Vanderbilt, A.S.1    Gaby, N.S.2    Rodwell, V.W.3
  • 39
    • 0021664042 scopus 로고
    • Pseudomonas aeruginosa mutants affected in anaerobic growth on arginine: Evidence for a four-gene cluster encoding the arginine deiminase pathway
    • Vander Wauven, C., A. Pierard, M. Kley-Raymann, and D. Haas. 1984. Pseudomonas aeruginosa mutants affected in anaerobic growth on arginine: evidence for a four-gene cluster encoding the arginine deiminase pathway. J. Bacteriol. 160:928-934.
    • (1984) J. Bacteriol , vol.160 , pp. 928-934
    • Vander Wauven, C.1    Pierard, A.2    Kley-Raymann, M.3    Haas, D.4
  • 40
    • 34249819666 scopus 로고    scopus 로고
    • Characterization of an ATase in arginine catabolism of Pseudomonas aeruginosa PAO1
    • Yang, Z., and C.-D. Lu. 2007. Characterization of an ATase in arginine catabolism of Pseudomonas aeruginosa PAO1. J Bacteriol. 189:3954-3959.
    • (2007) J Bacteriol , vol.189 , pp. 3954-3959
    • Yang, Z.1    Lu, C.-D.2


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