Expression profiling of BEN regulated genes in mouse embryonic fibroblasts

Journal of Experimental Zoology Part B: Molecular and Developmental Evolution

Volumn 308, Issue 3, 2007, Pages 209-224

  Chimge, Nyam Osor ^a   Mungunsukh, Ognoon ^a   Ruddle, Frank ^a   Bayarsaihan, Dashzeveg ^b  

^a YALE UNIVERSITY   (United States)

^b UNIVERSITY OF LOUISVILLE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

GTF2IRD1 PROTEIN, MOUSE; MUSCLE PROTEIN; NUCLEAR PROTEIN; TRANSACTIVATOR PROTEIN; UNCLASSIFIED DRUG;

ANIMAL; ARTICLE; COMPARATIVE STUDY; CYTOLOGY; DNA MICROARRAY; EMBRYO (ANATOMY); FIBROBLAST; GENE; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENETICS; METABOLISM; MOUSE; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; WESTERN BLOTTING;

ANIMALS; BLOTTING, WESTERN; EMBRYO, MAMMALIAN; FIBROBLASTS; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENES; MICE; MUSCLE PROTEINS; NUCLEAR PROTEINS; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; TRANS-ACTIVATORS;

VERTEBRATA;

EID: 34249788980     PISSN: 15525007     EISSN: 15525015     Source Type: Journal    
DOI: 10.1002/jez.b.21129     Document Type: Article

References (49)

1. Bayarsaihan D, Ruddle FH. 2000. Isolation and characterization of BEN, a member of the TFII-I family of DNA-binding proteins containing distinct helix-loop-helix domains. Proc Natl Acad Sci USA 97:7342-7347.
2. Bayarsaihan D, Dunai J, Greally JM, Kawasaki K, Sumiyama K, Enkhmandakh B, Shimizu N, Ruddle FH. 2002. Genomic organization of the genes Gtf2ird1, Gtf2i, and Ncf1 at the mouse chromosome 5 region syntenic to the human chromosome 7q11.23 Williams syndrome critical region. Genomics 79:137-143.
3. Bayarsaihan D, Bitchevaia N, Enkhmandakh B, Tussie-Luna MI, Leckman JF, Roy A, Ruddle F. 2003. Expression of BEN, a member of TFII-I family of transcription factors, during mouse pre- and postimplantation development. Gene Expression Patterns 3:579-589.
4. Chen J, Malcolm T, Estable MC, Roeder RG, Sadowski I. 2005. TFII-I regulates induction of chromosomally integrated human immunodeficiency virus type 1 long terminal repeat in cooperation with USF. J Virol 79:4396-4406.
5. Cheriyath V, Roy AL. 2000. Alternatively spliced isoforms of TFII-I. Complex formation, nuclear translocation, and differential gene regulation. J Biol Chem 275:26300-26308.
6. Cheriyath V, Novina CD, Roy AL. 1998. TFII-I regulates Vbeta promoter activity through an initiator element. Mol Cell Biol 18:4444-4454.
7. Clark MP, Chow CW, Rinaldo JE, Chalkley R. 1998. Multiple domains for initiator binding proteins TFII-I and YY-1 are present in the initiator and upstream regions of the rat XDH/XO TATA-less promoter. Nucleic Acids Res 26: 2813-2820.
8. Danoff SK, Taylor HE, Blackshaw S, Desiderio S. 2000. TFII-I, a candidate gene for Williams syndrome cognitive profile: parallels between regional expression in mouse brain and human phenotype. Neuroscience 123:931-938.
9. Desgranges ZP, Ahn J, Lazebnik MB, Ashworth T, Lee C, Pestell RC, Rosenberg N, Prives C, Roy AL. 2005. Inhibition of TFII-I-dependent cell cycle regulation by p53. Mol Cell Biol 25:10940-10952.
10. Enkhmandakh B, Bitchevaia N, Ruddle F, Bayarsaihan D. 2004. The early embryonic expression of TFII-I during mouse preimplantation development. Gene Expression Patterns 4:25-28.
11. Franke Y, Peoples RG, Francke U. 1999. Identification of GTF2IRD1, a putative transcription factor within the Williams-Beuren syndrome deletion at 7q11.23. Cytogenet Cell Genet 86:296-304.
12. Grueneberg DA, Henry RW, Brauer A, Novina CD, Cheriyath V, Roy AL, Gilman M. 1997. A multifunctional DNA-binding protein that promotes the formation of serum response factor/homeodomain complexes: identity to TFII-I. Genes Dev 11:2482-2493.
13. Hakimi MA, Dong Y, Lane WS, Speicher DW, Shiekhattar R. 2003. A candidate X-linked mental retardation gene is a component of a new family of histone deacetylase-containing complexes. J Biol Chem 278:7234-7239.
14. Hinsley TA, Cunliffe P, Tipney HJ, Brass A, Tassabehji M. 2004. Comparison of TFII-I gene family members deleted in Williams-Beuren syndrome. Protein Sci 13:2588-2599.
15. Hong M, Lin MY, Huang JM, Baumeister P, Hakre S, Roy AL, Lee AS. 2005. Transcriptional regulation of the Grp78 promoter by endoplasmic reticulum stress: role of TFII-I and its tyrosine phosphorylation. J Biol Chem 280: 16821-16828.
16. Hoppe R, Frank H, Breer H, Strotmann J. 2003. The clustered olfactory receptor gene family 262: genomic organization, promotor elements, and interacting transcription factors. Genome Res 13:2674-2685.
17. Jackson TA, Taylor HE, Sharma D, Desiderio S, Danoff SK. 2005. Vascular endothelial growth factor receptor-2: counter-regulation by the transcription factors, TFII-I and TFII-IRD1. J Biol Chem 280:29856-29863.
18. Johansson E, Skogman E, Thelander L. 1995. The TATA-less promoter of mouse ribonucleotide reductase R1 gene contains a TFII-I binding initiator element essential for cell cycle-regulated transcription. J Biol Chem 270: 30162-30167.
19. Kim DW, Cheriyath V, Roy AL, Cochran BH. 1998. TFII-I enhances activation of the c-fos promoter through interactions with upstream elements. Mol Cell Biol 18: 3310-3320.
20. Ku M, Sokol SY, Wu J, Tussie-Luna MI, Roy AL, Hata A. 2005. Positive and negative regulation of the transforming growth factor beta/activin target gene goosecoid by the TFII-I family of transcription factors. Mol Cell Biol 25: 7144-7157.
21. Lei H, Wang H, Juan AH, Ruddle FH. 2005. The identification of Hoxc8 target genes. Proc Natl Acad Sci USA 102: 2420-2424.
22. Livak KJ, Schmittgen TD. 2001. Analysis of relative gene expression data using real-time quantitative PCR and the 2(-delta delta C(T)) method. Methods 25:402-408.
23. Makeyev AV, Erdenechimeg L, Mungunsukh O, Roth JJ, Enkhmandakh B, Ruddle FH, Bayarsaihan D. 2004. GTF2IRD2 is located in the Williams-Beuren syndrome critical region 7q11.23 and encodes a protein with two TFII-I-like helix-loop-helix repeats. Proc Natl Acad Sci USA 101:11052-11057.
24. Manzano-Winkler B, Novina CD, Roy AL. 1996. TFII is required for transcription of the naturally TATA-less but initiator-containing Vbeta promoter. J Biol Chem 271: 12076-12081.
25. Mobley CM, Sealy L. 2000. The Rous sarcoma virus long terminal repeat promoter is regulated by TFII-I. J Virol 74:6511-6519.
26. Morikawa N, Clarke TR, Novina CD, Watanabe K, Haqq C, Weiss M, Roy AL, Donahoe PK. 2000. Human Mullerian-inhibiting substance promoter contains a functional TFII-I-binding initiator. Biol Reprod 63:1075-1083.
27. O'Mahoney JV, Guven KL, Lin J, Joya JE, Robinson CS, Wade RP, Hardeman EC. 1998. Identification of a novel slow-muscle-fiber enhancer binding protein, MusTRD1. Mol Cell Biol 18:6641-6652.
28. Osborne LR. 1999. Williams-Beuren syndrome: unraveling the mysteries of a microdeletion disorder. Mol Genet Metab 67:1-10.
29. Parker R, Phan T, Baumeister P, Roy B, Cheriyath V, Roy AL, Lee AS. 2001. Identification of TFII-I as the endoplasmic reticulum stress response element binding factor ERSF: its autoregulation by stress and interaction with ATF6. Mol Cell Biol 21:3220-3233.
30. Polly P, Haddadi LM, Issa LL, Subramaniam N, Palmer SJ, Tay ES, Hardeman EC. 2003. hMusTRD alphal represses MEF2 activation of the troponin I slow enhancer. J Biol Chem 278:36603-36610.
31. Ring C, Ogata S, Meek L, Song J, Ohta T, Miyazono K, Cho KW. 2002. The role of a Williams-Beuren syndrome-associated helix-loop-helix domain-containing transcription factor in activin/nodal signaling. Genes Dev 16:820-835.
32. Roy AL, Meisterernst M, Pognonec P, Roeder RG. 1991. Cooperative interaction of an initiator-binding transcription initiation factor and the helix-loop-helix activator USF. Nature 354:245-248.
33. Roy AL, Du H, Gregor PD, Novina CD, Martinez E, Roeder RG. 1997. Cloning of an inr- and E-box-binding protein, TFII-I, that interacts physically and functionally with USF1. Embo J 16:7091-7104.
34. Roy AL. 2001. Biochemistry and biology of the inducible multifunctional transcription factor TFII-I. Gene 274: 1-13.
35. Stasyk T, Dubrovska A, Lomnytska M, Yakymovych I, Wernstedt C, Heldin CH, Hellman U, Souchelnytskyi S. 2005. Phosphoproteome profiling of transforming growth factor-{beta} signaling: abrogation of TGF{beta}1-dependent phosphorylation of TFII-I enhances cooperation of TFII-I and Smad3 in transcription. Mol Biol Cell 16: 4765-4780.
36. Tantin D, Tussie-Luna MI, Roy AL, Sharp PA. 2004. Regulation of immunoglobulin promoter activity by TFII-I class transcription factors. J Biol Chem 279: 5460-5469.
37. Tassabehji M, Carette M, Wilmot C, Donnai D, Read AP, Metcalfe K. 1999. A transcription factor involved in skeletal muscle gene expression is deleted in patients with Williams syndrome. Eur J Hum Genet 7:737-747.
38. Tassabehji M, Hammond P, Karmiloff-Smith A, Thompson P, Thorgeirsson SS, Durkin ME, Popescu NC, Hutton T, Metcalfe K, Rucka A, Stewart H, Read AP, Maconochie M, Donnai D. 2005. GTF2IRD1 in craniofacial development of humans and mice. Science 310:1184-1187.
39. Tay ES, Guven KL, Subramaniam N, Polly P, Issa LL, Gunning PW, Hardeman EC. 2003. Regulation of alter-native splicing of GTF2IRD1 and its impact on slow muscle promoter activity. Biochem J 374:359-367.
40. Tipney HJ, Hinsley TA, Brass A, Metcalfe K, Donnai D, Tassabehji M. 2004. Isolation and characterization of GTF2IRD2, a noval fusion gene and member of the TFII-I family of transcription factors, deleted in Williams-Beuren syndrome. Eur J Hum Genet 12:551-560.
41. Tussie-Luna MI, Bayarsaihan D, Ruddle FH, Roy AL. 2001. Repression of TFII-I-dependent transcription by nuclear exclusion. Proc Natl Acad Sci USA 98:7789-7794.
42. Tussie-Luna MI, Bayarsaihan D, Seto E, Ruddle FH, Roy AL. 2002a. Physical and functional interactions of histone deacetylase 3 with TFII-I family proteins and PIASxbeta. Proc Natl Acad Sci USA 99:12807-12812.
43. Tussie-Luna MI, Michel B, Hakre S, Roy AL. 2002b. The SUMO ubiquitin-protein isopeptide ligase family member Miz1/PIASxbeta/Siz2 is a transcriptional cofactor for TFII-I. J Biol Chem 277:43185-43193.
44. Vullhorst D, Buonanno A. 2003. Characterization of general transcription factor 3, a transcription factor involved in slow muscle-specific gene expression. J Biol Chem 278: 8370-8379.
45. Vullhorst D, Buonanno A. 2005. Multiple GTF2I-like repeats of general transcription factor 3 exhibit DNA binding properties. Evidence for a common origin as a sequence-specific DNA interaction module. J Biol Chem 280:31722-31731.
46. Wang YK, Perez-Jurado LA, Francke U. 1998. A mouse single-copy gene, Gtf2i, the homolog of human GTF2I, that is duplicated in the Williams-Beuren syndrome deletion region. Genomics 48:163-170.
47. Wen YD, Cress WD, Roy AL, Seto E. 2003. Histone deacetylase 3 binds to and regulates the multifunctional transcription factor TFII-I. J Biol Chem 278: 1841-1847.
48. Wu Y, Patterson C. 1999. The human KDR/flk-1 gene contains a functional initiator element that is bound and transactivated by TFII-I. J Biol Chem 274:3207-3214.
49. Yan X, Zhao X, Qian M, Guo N, Gong X, Zhu X. 2000. Characterization and gene structure of a novel retinoblastoma-protein-associated protein similar to the transcription regulator TFII-I. Biochem J 345: 749-757.